scholarly journals Genome Sequence of Salarchaeum sp. Strain JOR-1, an Extremely Halophilic Archaeon from the Dead Sea

2020 ◽  
Vol 9 (5) ◽  
Author(s):  
Brian P. Anton ◽  
Priya DasSarma ◽  
Fabiana L. Martinez ◽  
Satyajit L. DasSarma ◽  
Mohammad Al Madadha ◽  
...  
Keyword(s):  
Real Time ◽  
Genome Sequence ◽  
Single Molecule ◽  
East Coast ◽  
Dead Sea ◽  
Halophilic Archaeon ◽  
Smrt Sequencing ◽  
Circular Chromosome ◽  
Extremely Halophilic Archaeon ◽  
The Dead

An extremely halophilic archaeon, Salarchaeum sp. strain JOR-1, was isolated from the east coast of the Dead Sea, Kingdom of Jordan, and sequenced using single-molecule real-time (SMRT) sequencing. The GC-rich 2.5-Mbp genome was composed of a circular chromosome and a megaplasmid. The genome contained 2,633 genes and was incorporated into HaloWeb (https://halo.umbc.edu/).

scholarly journals Complete Genome Sequence of an Extremely Halophilic Archaeon from Great Salt Lake, Halobacterium sp. GSL-19

2021 ◽  
Vol 10 (28) ◽  
Author(s):  
Priya DasSarma ◽  
Brian P. Anton ◽  
Hedvig A. L. von Ehrenheim ◽  
Richard J. Roberts ◽  
Shiladitya DasSarma
Keyword(s):  
Single Molecule ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Salt Lake ◽  
Great Salt Lake ◽  
Halophilic Archaeon ◽  
Smrt Sequencing ◽  
Circular Chromosome ◽  
The North ◽  
Extremely Halophilic Archaeon

An extremely halophilic archaeon, Halobacterium sp. strain GSL-19, was isolated from the north arm of Great Salt Lake in Utah. Single-molecule real-time (SMRT) sequencing was used to establish a GC-rich 2.3-Mbp genome composed of a circular chromosome and 2 plasmids, with 2,367 predicted genes, including 1 coding a CTAG-methylase widely distributed among Haloarchaea .

scholarly journals Genome Sequence of the Early 20th-Century Extreme Halophile Halobacterium sp. Strain NRC-34001

2022 ◽  
Author(s):  
Priya DasSarma ◽  
Brian P. Anton ◽  
Jessie M. Griffith ◽  
Karina S. Kunka ◽  
Richard J. Roberts ◽  
...  
Keyword(s):  
Real Time ◽  
20Th Century ◽  
Genome Sequence ◽  
Single Molecule ◽  
Early 20Th Century ◽  
Extreme Halophile ◽  
Halophilic Archaeon ◽  
Extremely Halophilic Archaeon ◽  
Conserved Core

Halobacterium sp. strain NRC-34001 is a red, extremely halophilic archaeon isolated in Canada in 1934. Single-molecule real-time sequencing revealed a 2.3-Mbp genome with a 2-Mbp chromosome and two plasmids (235 kb and 43 kb). The genome encodes all conserved core haloarchaeal groups (cHOGs) and a highly acidic proteome.

scholarly journals Complete Genome and Methylome Analysis of the Box-Shaped Halophilic Archaeon Haloarcula sinaiiensis ATCC 33800

2021 ◽  
Vol 10 (34) ◽  
Author(s):  
Alexey Fomenkov ◽  
Priya DasSarma ◽  
Sean P. Kennedy ◽  
Richard J. Roberts ◽  
Shiladitya DasSarma
Keyword(s):  
Real Time ◽  
Single Molecule ◽  
Complete Genome ◽  
Bioinformatic Analysis ◽  
Halophilic Archaeon ◽  
Smrt Sequencing ◽  
Content Type ◽  
Methylome Analysis

The genome of halophilic archaeon Haloarcula sinaiiensis ATCC 33800 was sequenced and assembled and comprises seven replicons. Four m6A and one m4C modified motifs and their responsible methyltransferase genes have been identified in the genome by single-molecule real-time (SMRT) sequencing and bioinformatic analysis.

scholarly journals Complete Genome Sequence and Methylome Analysis ofBacillus globigiiATCC 49760

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Richard D. Morgan
Keyword(s):  
Bacillus Subtilis ◽  
Real Time ◽  
Genome Sequence ◽  
Single Molecule ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Restriction Enzymes ◽  
Complete Sequence ◽  
Smrt Sequencing ◽  
Methylome Analysis

Bacillus subtilis(Ehrenburg) Cohn ATCC 49760, deposited asBacillus globigii, is the source strain for the restriction enzymes BglI and BglII. Its complete sequence and full methylome were determined using single-molecule real-time (SMRT) sequencing.

scholarly journals Complete Genome Sequence of Brachybacterium sp. Strain SGAir0954, Isolated from Singapore Air

2019 ◽  
Vol 8 (32) ◽  
Author(s):  
Phu Pwint Thin Hlaing ◽  
Ana Carolina M. Junqueira ◽  
Akira Uchida ◽  
Rikky W. Purbojati ◽  
James N. I. Houghton ◽  
...  
Keyword(s):  
Real Time ◽  
Genome Sequence ◽  
Single Molecule ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Smrt Sequencing ◽  
Protein Coding ◽  
Protein Coding Genes ◽  
Long Reads

Brachybacterium sp. strain SGAir0954 was isolated from tropical air collected in Singapore, and its genome was sequenced and assembled using long reads generated by single-molecule real-time (SMRT) sequencing. The complete genome has a size of 3.41 Mb and consists of 2,955 protein coding genes, 50 tRNAs, and 9 rRNAs.

scholarly journals Genome Sequence of Halobacterium sp. Strain BOL4-2, Isolated and Cultured from Salar de Uyuni, Bolivia

2021 ◽  
Vol 10 (48) ◽  
Author(s):  
Priya DasSarma ◽  
Brian P. Anton ◽  
Hedvig A. L. von Ehrenheim ◽  
Fabiana L. Martinez ◽  
Daniel Guzmán ◽  
...  
Keyword(s):  
Real Time ◽  
Genome Sequence ◽  
Single Molecule ◽  
Smrt Sequencing ◽  
Salt Flat

Halobacterium sp. strain BOL4-2 was isolated from an Andean salt flat, Salar de Uyuni, in Bolivia. Single-molecule real-time (SMRT) sequencing revealed a 2.4-Mbp genome with a 2.0-Mbp chromosome and four plasmids (2 to 299 kb). Its isolation from an environment experiencing multiple extremes makes the strain interesting for astrobiology.

scholarly journals First Complete Genome Sequence of the Skin-Improving Lactobacillus curvatus Strain FBA2, Isolated from Fermented Vegetables, Determined by PacBio Single-Molecule Real-Time Technology

2016 ◽  
Vol 4 (5) ◽  
Author(s):  
Kazuma Nakano ◽  
Akino Shiroma ◽  
Hinako Tamotsu ◽  
Shun Ohki ◽  
Makiko Shimoji ◽  
...  
Keyword(s):  
Real Time ◽  
Genome Sequence ◽  
Single Molecule ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Lactobacillus Curvatus ◽  
Circular Chromosome ◽  
Pacbio Rs Ii ◽  
Fermented Vegetables ◽  
Single Circular Chromosome

The first complete genome sequence of Lactobacillus curvatus was determined by PacBio RS II. The single circular chromosome (1,848,756 bp, G+C content of 42.1%) of L. curvatus FBA2, isolated from fermented vegetables, contained low G+C regions (26.9% minimum) and 43 sets of >1,000-bp identical sequence pairs. No plasmids were detected.

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