scholarly journals Draft Genome Sequences of Basidiomycetous Epiphytic Phylloplane Yeast Type Strains Dioszegia crocea JCM 2961 and Dioszegia aurantiaca JCM 2956

2019 ◽  
Vol 8 (26) ◽  
Author(s):  
Masako Takashima ◽  
Ri-ichiroh Manabe ◽  
Moriya Ohkuma
Keyword(s):  
Related Species ◽  
Draft Genome ◽  
Genome Sequences ◽  
Closely Related Species ◽  
Content Type ◽  
Phylloplane Yeasts ◽  
Type Strains ◽  
Plant Microbiome

We report the draft genome sequences of type strains for Dioszegia crocea and its closely related species Dioszegia aurantiaca, which should improve our understanding of the epiphytic phylloplane yeasts. These data will also have implications for the plant microbiome, since Dioszegia is considered a microbial “hub” taxon.

scholarly journals Pseudomonas yamanorum sp. nov., a psychrotolerant bacterium isolated from a subantarctic environment

2015 ◽  
Vol 65 (Pt_2) ◽  
pp. 424-431 ◽  
Author(s):  
Víctor Gonzalo Arnau ◽  
Leandro Arturo Sánchez ◽  
Osvaldo Daniel Delgado
Keyword(s):  
16S Rrna ◽  
Related Species ◽  
Type Species ◽  
Sequence Similarity ◽  
Rrna Gene ◽  
Closely Related Species ◽  
Content Type ◽  
Link Type ◽  
Psychrotolerant Bacterium ◽  
Type Strains

A psychrotolerant strain, 8H1T, was isolated from soil samples collected in Isla de los Estados, Ushuaia, Argentina. Cells were Gram-negative, aerobic, straight rods, occurring singly or in pairs, non-spore-forming and motile by means of two polar flagella. The isolate was able to grow in the range 4–35 °C, with optimum growth at 28 °C. The predominant cellular fatty acids were summed feature 3 (C16 : 1ω6c and/or C16 : 1ω7c), C16 : 0 and summed feature 8 (C18 : 1ω6c and/or C18 : 1ω7c). The polar lipid pattern of strain 8H1T comprised phosphatidylglycerol, diphosphatidylglycerol, phosphatidylethanolamine and an unknown phospholipid. Ubiquinone 9 (Q-9) was the predominant lipoquinone. The DNA G+C content was 59.8 mol%. 16S rRNA gene sequence-based phylogeny suggested the affiliation of strain 8H1T to the ‘Pseudomonas fluorescens group’, displaying ≥98.5 % sequence similarity to 29 type strains. A multilocus sequence analysis (MLSA) study performed by concatenating 16S rRNA, gyrB, rpoD and rpoB gene sequences showed that isolate 8H1T could be discriminated from closely related species of the genus Pseudomonas and placed in the ‘Pseudomonas gessardii subgroup’, including the species with the highest MLSA sequence similarities: Pseudomonas brenneri (96.2 %), P. gessardii (96.1 %), P. proteolytica (96.0 %), P. meridiana (96.0 %) and P. mucidolens (95.4 %). DNA–DNA hybridization analysis between 8H1T and the type strains of these closely related species revealed relatedness values of 27.0, 8.8, 41.2, 39.7 and 46.1 %, respectively. These results, together with differences in several phenotypic features, support the classification of a novel species, for which the name Pseudomonas yamanorum sp. nov. is proposed. The type strain is 8H1T ( = DSM 26522T = CCUG 63249T = LMG 27247T).

scholarly journals Bacillus invictae sp. nov., isolated from a health product

2014 ◽  
Vol 64 (Pt_11) ◽  
pp. 3867-3876 ◽  
Author(s):  
Raquel Branquinho ◽  
Clara Sousa ◽  
Hugo Osório ◽  
Luís Meirinhos-Soares ◽  
João Lopes ◽  
...  
Keyword(s):  
Related Species ◽  
Acid Production ◽  
Type Species ◽  
Rrna Gene ◽  
Spectroscopic Techniques ◽  
Health Product ◽  
Closely Related Species ◽  
Content Type ◽  
Link Type ◽  
Type Strains

A Gram-positive, rod-shaped, endospore-forming Bacillus isolate, Bi.FFUP1 T, recovered in Portugal from a health product was subjected to a polyphasic study and compared with the type strains of Bacillus pumilus , Bacillus safensis , Bacillus altitudinis and Bacillus xiamenensis , the phenotypically and genotypically most closely related species. Acid production from cellobiose, d-glucose and d-mannose and absence of acid production from d-arabinose, erythritol, inositol, maltose, mannitol, raffinose, rhamnose, sorbitol, starch and l-tryptophan discriminated this new isolate from the type strains of the most closely related species. Additionally, a significant different protein and carbohydrate signature was evidenced by spectroscopic techniques, matrix-assisted laser desorption/ionization time-of-flight mass spectrometry and Fourier transform IR spectroscopy with attenuated total reflectance. Using a chemometric approach, the score plot generated by principal component analysis clearly delineated the isolate as a separate cluster. The quinone system for strain Bi.FFUP1 T comprised predominantly menaquinone MK-7 and major polar lipids were diphosphatidylglycerol, an unidentified phospholipid and an unidentified glycolipid. Strain Bi.FFUP1 T showed ≥99 % 16S rRNA gene sequence similarity to B. safensis FO-036bT, B. pumilus (7061T and SAFR-032), B. altitudinis 41KF2bT and B. xiamenensis HYC-10T. Differences in strain Bi.FFUP1 T gyrB and rpoB sequences in comparison with the most closely related species and DNA–DNA hybridization experiments with Bi.FFUP1 T and B. pumilus ATCC 7061T, B. safensis FO-036bT, B. altitudinis 41KF2bT and B. xiamenensis HYC-10T gave relatedness values of 39.6 % (reciprocal 38.0 %), 49.9 % (reciprocal 42.9 %), 61.9 % (reciprocal 52.2 %) and 61.7 % (reciprocal 49.2 %), respectively, supported the delineation of strain Bi.FFUP1 T as a representative of a novel species of the genus Bacillus , for which the name Bacillus invictae sp. nov. is proposed, with strain Bi.FFUP1 T ( = DSM 26896T = CCUG 64113T) as the type strain.

scholarly journals Revised Draft Genome Sequences of Rhodomicrobium vannielii ATCC 17100 and Rhodomicrobium udaipurense JA643

2021 ◽  
Vol 10 (13) ◽  
Author(s):  
Eric M. Conners ◽  
Emily J. Davenport ◽  
Arpita Bose
Keyword(s):  
Draft Genome ◽  
Genome Sequences ◽  
Genetic Studies ◽  
Content Type ◽  
Rhodomicrobium Vannielii ◽  
Type Strains

ABSTRACT Recent attempts to sequence regions of the Rhodomicrobium vannielii ATCC 17100 genome revealed discrepancies with the previously published genome. We report the revised draft genome sequences of the type strains Rhodomicrobium vannielii ATCC 17100 and Rhodomicrobium udaipurense JA643. These revisions will facilitate genetic studies of phototrophic metabolism in these bacteria.

scholarly journals Draft Genome Sequences of Chryseobacterium lactis NCTC11390T Isolated from Milk, Chryseobacterium oncorhynchi 701B-08T from Rainbow Trout, and Chryseobacterium viscerum 687B-08T from Diseased Fish

2018 ◽  
Vol 6 (26) ◽  
Author(s):  
Jin-Ju Jeong ◽  
Ye Ji Lee ◽  
Duleepa Pathiraja ◽  
Byeonghyeok Park ◽  
In-Geol Choi ◽  
...  
Keyword(s):  
Growth Promotion ◽  
Bacterial Species ◽  
Draft Genome ◽  
Genome Sequences ◽  
Free Living ◽  
Gram Negative ◽  
Content Type ◽  
The Family ◽  
Diseased Fish ◽  
Type Strains

The genus Chryseobacterium, belonging to the family Flavobacteriaceae, contains Gram-negative, yellow-pigmented, rod-shaped, and non-spore-forming bacterial species, which may be free living or parasitic. Here, we report draft genome sequences of type strains of three species of Chryseobacterium containing genes related to biological control and plant growth promotion.

scholarly journals Draft Genome Sequences of the Type Strains of Six Macrococcus Species

2019 ◽  
Vol 8 (19) ◽  
Author(s):  
Shahneela Mazhar ◽  
Eric Altermann ◽  
Colin Hill ◽  
Olivia McAuliffe
Keyword(s):  
Draft Genome ◽  
Species Comparison ◽  
Comprehensive Understanding ◽  
Genome Sequences ◽  
Content Type ◽  
Type Strains ◽  
Cross Species Comparison

We report here the draft genome sequences of Macrococcus bovicus ATCC 51825T, Macrococcus carouselicus ATCC 51828T, Macrococcus equipercicus ATCC 51831T, Macrococcus brunensis CCM4811T, Macrococcus hajekii CCM4809T, and Macrococcus lamae CCM4815T. The availability of the genome sequences of these species will enable cross-species comparison, which could lead to a more comprehensive understanding of organisms of the Macrococcus genus.

scholarly journals Draft Genome Sequences of Two Bison-Type and Two Sheep-Type Strains of Mycobacterium avium subsp. paratuberculosis

2021 ◽  
Vol 10 (28) ◽  
Author(s):  
John P. Bannantine ◽  
Darrell O. Bayles
Keyword(s):  
United States ◽  
Mycobacterium Avium ◽  
Draft Genome ◽  
The United States ◽  
Mycobacterium Avium Subsp ◽  
Type B ◽  
Genome Sequences ◽  
Content Type ◽  
Mycobacterium Avium Subsp Paratuberculosis ◽  
Type Strains

Genome sequences of two type B and two type S strains of Mycobacterium avium subsp. paratuberculosis are presented. These strains were isolated in the United States from sheep, bison, and cattle suffering from Johne’s disease. These genomes will increase our understanding of the minor differences that exist among this genetically stable subspecies.

scholarly journals Draft Genome Sequences of the Type Strains of Three Clavibacter Subspecies and Atypical Peach-Colored Strains Isolated from Tomato

2018 ◽  
Vol 7 (18) ◽  
Author(s):  
Ebrahim Osdaghi ◽  
Perrine Portier ◽  
Martial Briand ◽  
Géraldine Taghouti ◽  
Marie-Agnes Jacques
Keyword(s):  
Novel Species ◽  
Draft Genome ◽  
Clavibacter Michiganensis ◽  
Genome Sequences ◽  
Content Type ◽  
Type Strains

Here, we present the draft genome sequences of 10 Clavibacter sp. strains, including the type strains of different subspecies of Clavibacter michiganensis and a potentially novel species within the genus.

scholarly journals Draft Genome Sequences of Seven Chryseobacterium Type Strains

2019 ◽  
Vol 8 (1) ◽  
Author(s):  
Andisiwe Matu ◽  
Adeline Lum Nde ◽  
Lize Oosthuizen ◽  
Arina Hitzeroth ◽  
Moira Badenhorst ◽  
...  
Keyword(s):  
Draft Genome ◽  
Genome Sequences ◽  
Content Type ◽  
Type Strains

In an honors course on “Omics Sciences,” draft genome sequences of Chryseobacterium elymi KCTC 22547T, Chryseobacterium flavum KCTC 12877T, Chryseobacterium hispanicum KCTC 22104T, Chryseobacterium lathyri KCTC 22544T, “Candidatus Chryseobacterium massiliae” CCUG 51329T, Chryseobacterium piscium CCUG 51923T, and Chryseobacterium rhizosphaerae KCTC 22548T were generated to facilitate phylogenomic comparisons within the genus.

scholarly journals Draft Genome Sequences of Longimonas halophila KCTC 42399 and Longibacter salinarum KCTC 52045

2019 ◽  
Vol 8 (46) ◽  
Author(s):  
Kok Jun Liew ◽  
Seng Chong Teo ◽  
Mohd Shahir Shamsir ◽  
Kian Mau Goh
Keyword(s):  
Genome Annotation ◽  
Draft Genome ◽  
Genome Sequences ◽  
Content Type ◽  
Gene Mining ◽  
Type Strains

Longimonas halophila and Longibacter salinarum are type strains of underexplored genera affiliated with Salisaetaceae. Herein, we report the draft genome sequences of two strains of these bacteria, L. halophila KCTC 42399 and L. salinarum KCTC 52045, with the intent of broadening knowledge of this family. Genome annotation and gene mining revealed that both bacteria exhibit amylolytic abilities.

scholarly journals Draft Genome Sequences of the Type Strains of Actinobacillus indolicus (46K2C) and Actinobacillus porcinus (NM319), Two NAD-Dependent Bacterial Species Found in the Respiratory Tract of Pigs

2020 ◽  
Vol 9 (1) ◽  
Author(s):  
Janine T. Bossé ◽  
Yanwen Li ◽  
Roberto Fernandez Crespo ◽  
Øystein Angen ◽  
Matthew T. G. Holden ◽  
...  
Keyword(s):  
Respiratory Tract ◽  
Bacterial Species ◽  
Draft Genome ◽  
Lung Pathology ◽  
Upper Respiratory Tract ◽  
Genome Sequences ◽  
Content Type ◽  
Upper Respiratory ◽  
Type Strains

We report here the draft genome sequences of the type strains of Actinobacillus indolicus (46K2C) and Actinobacillus porcinus (NM319). These NAD-dependent bacterial species are frequently found in the upper respiratory tract of pigs and are occasionally associated with lung pathology.

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