scholarly journals Determining common variants in patients with haemophilia A in South Vietnam and screening female carriers in their family members

2021 ◽  
pp. jclinpath-2021-207703
Author(s):  
Bang Suong Thi Nguyen ◽  
Xuan Thao Thi Le ◽  
Nghia Huynh ◽  
Huy Huu Nguyen ◽  
Cong-Minh Truong Nguyen ◽  
...  

AimsThe aim of this study was to determine common variants in F8, including intron 22 inversion (Inv22), intron 1 inversion (Inv1) and point mutations, the transmission of these variants between patients with haemophilia A (HA) and their family members.MethodsGenetic analysis was conducted in 71 patients who were clinically diagnosed with HA and 152 related female members in South Vietnam by a combination of inversion PCR (I-PCR), multiplex PCR and direct sequencing.ResultsVariants in F8, including Inv22, point mutations (with 37 genotypes) and two novel variants, occupied 60 patients with HA. Among severe patients, the rate of Inv22 was 44%. Missense was the common point mutation of over 50% in patients with moderate HA and mild HA. Inv1 was absent in all patients. F8 variants were also found in 119 female carriers (FCs) (78.3%) from families related to patients with HA. There were 56 mothers (93.3%) carrying F8 variants and passing the same variants to their sons.ConclusionsThese findings were the first to provide important information about the presence of Inv22 and point mutation in Vietnamese patients with HA, the mothers and their female family members. It demonstrated that genetic diagnosis and counselling for HA carriers were essential factors for future improvements in comprehensive and equitable healthcare polices for patients with HA and FCs in Vietnam.

2006 ◽  
Vol 95 (04) ◽  
pp. 593-599 ◽  
Author(s):  
Christine Vinciguerra ◽  
Christophe Zawadzki ◽  
Yesim Dargaud ◽  
Gilles Pernod ◽  
Claire Berger ◽  
...  

SummaryDirect sequencing of the coding region of factor VIII (F8) gene was used to determine the mutations responsible for severe haemophilia A (FVIII<1%) in 128 unrelated haemophiliacs A, negative for intron 22 and intron 1 inversions. A mutation was found in 122/128 patients (95%). Ninety-six distinct mutations were identified in this cohort, 62 of these are novel. They consisted of deletions (7 large and 24 small deletions), insertions (n=9), associations of insertion/deletion (n=2), association of deletion/substitution (n=1), and single nucleotide substitutions (53 point mutations consisting of 31 missense, 20 nonsense, and 2 splicing mutations). Twenty-two patients had developed inhibitors, and among this subgroup 3 large deletions, 6 frameshift, 9 nonsense and 4 missense mutations were detected. For6 patients, among which one developed an anti-FVIII inhibitor, no mutations were detected in the coding and splicing regions of factor VIII gene. Different approaches of molecular modelling were performed in addition to familial linkage analysis to determine the pathophysiological responsibility of these novel missense mutations.


2018 ◽  
Vol 8 (1) ◽  
Author(s):  
Cornelis L. Harteveld

The molecular defects underlying haemoglobinopathies are both deletions and point mutations in the alpha- or beta-globin genes or gene-clusters. To detect point mutations causing alpha- or beta-thalassaemia, direct sequencing is the method of choice to detect the widest spectrum of molecular defects. The most established approach in DNA diagnostics to screen for the most common deletion defects causing alpha-thalassaemia or beta-thalassaemia is gap- PCR, Multiplex Ligation-dependent Probe Amplification (MLPA) and Sanger Sequencing technology to detect breakpoint sequences of previously uncharacterized deletions/duplications. We demonstrate the recent advances in the determination of duplications and deletions causing alpha- or beta-thalassemia, using Next Generation Sequencing, array Comparative Genome Hybridization and Target Locus Amplification. We present three cases in which the use of advanced technologies allow the diagnosis of unexpected disease genotypes.


2017 ◽  
Vol 1 ◽  
Author(s):  
Nur Farahiyah Mohamed Idrus ◽  
Nur Syahira Rosley ◽  
Nining Irfanita ◽  
Yunita Dewi Ardini Fadjar ◽  
Solachuddin J.A Ichwan ◽  
...  

<p class="AbstractContent"><strong>Objective: </strong>Hypodontia is portrayed by the missing of one to six numbers of teeth. PAX9 is one of the genes that caused non-syndromic hypodontia. We aimed to investigate the PAX9 mutation of non-syndromic hypodontia with clinical variability in a Malaysian hypodontia family.</p><p class="AbstractContent"><strong><span>Methods</span></strong><span>: Clinical examinations for all participants whilst orthophantomogram (OPG) was taken for hypodontia patient only. Saliva was collected for genetic analysis. Direct sequencing was performed by using exon 2and 3 of PAX9 gene.</span></p><p class="AbstractContent"><strong>Results</strong>: 3 out of 5 family members are affected with hypodontia. The mother has missing posterior tooth and her daughters have missing anterior teeth. The point mutation was identified on exon 2 on patient 1C; c.620G&gt;T and on exon 3 on patients 1B; c.465delG, 1C; c.273T&gt;G, 1D; c.462delT.</p><p class="AbstractContent"><strong>Conclusions: </strong>Our findings suggested those identified points mutations of PAX9 either on exon 2 or exon 3 is responsible for the hypodontia phenotype in this family.</p>


Blood ◽  
2005 ◽  
Vol 106 (11) ◽  
pp. 4958-4958
Author(s):  
Clara Ricci ◽  
Francesco Onida ◽  
Elisa Fermo ◽  
Ermanna Rovida ◽  
Federica Servida ◽  
...  

Abstract Chronic myelomonocytic leukemia (CMML) is a myeloid malignancy characterized by high heterogeneity of clinical and hematological features, classified into a new category of myelodysplastic/myeloproliferative diseases by the last World Health Organization. Poor data are available on the biology of CMML and molecular mechanisms related to disease development and progression. Among hematological malignancies, CMML has the highest frequency of point mutations of the RAS gene family (20% to 35% of patients). Patients with proliferative variant of the disease (MP-CMML, WBC &gt; 12 x 109/L) have significantly higher frequency of RAS point mutations than patients with dysplastic variant (MD-CMML, WBC &lt; 12 x 109/L). In fact RAS mutations have been shown to associate with features of cell proliferation and monocytosis rather than dysplasia. However, the exact role of RAS mutations in the pathophysiology of CMML is unknown. Ras family members are small G-proteins that regulate cellular proliferation, differentiation and apoptosis. Switching from the active GTP- to the inactive GDP-bound state is associated with a conformational change of the switch I (residues 30–38) and switch II (60–76) regions. Activating point mutations of codons 12, 13, 59, 61 and 63 have been shown to decrease the weak intrinsic GTPase activity of Ras, leading to its constitutive activation. In April 2003 a patient with diagnosis of MD-CMML (WBC = 6,5 x 109/L) was admitted at our hospital. Genomic DNA extracted from peripheral blood mononuclear cells was amplified with primers for exons 1 and 2 of N- and K-RAS by PCR, and subsequently sequenced. At this stage of the disease, no mutation was detected. In January 2005 the patient experienced a rapid progression to MP-subtype, with WBC counts constantly over 30 x 109/L. Molecular analysis was repeated and a mutation GGA → GAA in codon 60 of N-RAS was found, leading to the substitution of Glycine with Glutamate in the corresponding aminoacidic position. PCR amplification and direct sequencing of both forward and reverse strands from the genomic sample were repeated twice and the presence of mutation confirmed. Gly60 is highly conserved among Ras family members; it is localized in the switch II region which is involved in the binding to GTPase-activating proteins (GAPs) and in the catalytic mechanism. Preliminary data, obtained from a computational model of the Gly60 →Glu mutant protein, show that the negative charge of Glutamate replacing the neutral aminoacid Glycine may exert a highly destabilizing effect by interfering with electrostatic interactions of the “arginine finger” of GAPs, thus altering the conformational changes necessary for Ras activation. Mutations affecting codon 60 of Ras proteins were rarely reported in human cancer and consequently little is known about their transforming potential; however, detection of Gly60 →Glu substitution in a CMML patient after progression from MD- to MP- phenotype suggests a pathogenetic event. To the best of our knowledge this is the first time that a RAS point mutation is identified concomitantly with progression of CMML from dysplastic to proliferative variant. Based on these results, further experiments are on going to characterize the novel mutant protein and thus to define whether N-Ras activation may be effectively involved in the progression of CMML.


Blood ◽  
2010 ◽  
Vol 116 (21) ◽  
pp. 3443-3443
Author(s):  
Dong-Wook Kim ◽  
Dongho Kim ◽  
Soo-Hyun Kim ◽  
Saengsuree Jootar ◽  
Hyun-Gyung Goh ◽  
...  

Abstract Abstract 3443 BCR-ABL kinase domain (KD) point mutation causes resistance to tyrosine kinase inhibitors (TKI) in CML patients through impaired binding of TKI to the target site. One of the characteristics of patients with BCR-ABL kinase domain point mutations is the fact that some patients have multiple mutations. However there have not been many studies showing that data about clinical relevance or dynamics of multiple mutation during CML treatment. From January 2002 to June 2010 at Seoul St Mary's Hospital, 277 CML patients were screened for mutation analysis due to sign of resistance to tyrosine kinase inhibitors including imatinib, nilotinib, dasatinib or bosutinib. We found that 95 patients have point mutation in BCR-ABL kinase domain through direct sequencing or ASO-PCR. Among them, 17 patients showed multiple mutation containing more than one type of point mutations in BCR-ABL KD. We investigated the patients with multiple mutations to characterize its clinical relevance and dynamics. Once mutation found, follow-up samples from the corresponding patients were collected and analyzed prospectively, or mutation status was analyzed retrospectively with cryopreserved samples if they were available. Status of the patients with multiple mutation is shown in Table 1. In order to investigate whether the multiple mutations are on same clone or on separated clone, we cloned serial samples from the 17 patients. Cloning of cDNA region corresponding to BCR-ABL KD into plasmid was performed and followed by transformation into competent cells, colony formation, plasmid preparation of 20 colonies from each sample, and then direct sequencing. Multiple mutations of 88% patients (15 out of 17) existed compound mutation which means the individual mutant types are located on the same BCR-ABL molecule. In addition of major mutation types which were detectable in direct sequencing analysis, all the patients showed to have minor types of mutations which were found only through BCR-ABL KD cloning and subsequent colony sequencing. To make sure that this minor mutation types were not caused by sequencing error, we also analyzed of 3 patients who showed TKI resistance, but had no BCR-ABL mutation. In addition, samples from 3 normal persons were analyzed with the same method. The frequency of appearance of the minor types of point mutation was reduced in the patient group who showed TKI resistance, but had no BCR-ABL mutation, and then dramatically decreased in the normal person group, indicating that BCR-ABL gene in patients with point mutation are relatively unstable. Analysis of serial samples from a same patient provided evidence of dynamic change of portion of compound mutation. In most case, portion of the clone containing compound mutation was increased as treatment went on, indicating the clone harboring compound mutation can take survival advantage over TKI treatment in comparison of the clone containing individual type of mutation. In addition, some patients showed change in individual mutation type comprising multiple mutation as treatment went on. Currently investigation of clinical relevance of compound mutation and other analyses are being carried on and more results will be provided in detail at the conference. Table 1. Patients Tx at mutation detection (mg) Compound type Compound % 1 Nilotinib400 G250E+T315I 6.7 G250E+D444G 33.3 T315I+D444G 6.7 2 Nilotinib400 M244V+T315I 95.0 3 Dasatinib100 Y253H+T315I 95.0 4 Dasatinib140 T315I+E459K 55.6 5 Dasatinib200 T315I+M351T 66.7 6 Dasatinib100 NCM Dasatinib80 NCM Dasatinib100 M244V+F359V 16.7 7 Bosutinib500 NCM 8 Dasatinib140 T315I+F359C 35.3 9 Imatinib400 E255K+T315I 5.6 10 Dasatinib80 E255V+T315I 90.0 11 Imatinib800 E255K+T315I 10.5 12 Nilotinib800 E255K+T315I 12.5 13 Dasatinib100 F311I+T315I 35.0 F311I+F317Lb 10.0 Imatinib400 F311I+T315I 10.0 F311I+F317La 15.0 F311I+F317Lb 55.0 14 Nilotinib800 Y253H+F359I 5.6 15 Bosutinib500 V299L+E459K 95.0 Nilotinib400 + Dasatinib100 V299L+F359I 5.0 V299L+E459K 55.0 V299L+F317La+E459K 15.0 V299L+F359I+E459K 15.0 V299L+F317La+F359I+E459K 5.0 16 Imatinib600 NCM 17 Imatinib400 NCM NCM: no compound mutation. Disclosures: No relevant conflicts of interest to declare.


1990 ◽  
Vol 85 (6) ◽  
Author(s):  
Lutz-Peter Berg ◽  
Kerstin Wieland ◽  
DavidS. Millar ◽  
Manfred Schl�sser ◽  
Michael Wagner ◽  
...  

1996 ◽  
Vol 75 (06) ◽  
pp. 959-964 ◽  
Author(s):  
I M Nesbitt ◽  
A C Goodeve ◽  
A M Guilliatt ◽  
M Makris ◽  
F E Preston ◽  
...  

Summaryvon Willebrand factor (vWF) is a multimeric glycoprotein found in plasma non covalently linked to factor VIII (FVIII). Type 2N von Willebrand disease (vWD) is caused by a mutation in the vWF gene that results in vWF with a normal multimeric pattern, but with reduced binding to FVIII.We have utilised methods for the phenotypic and genotypic detection of type 2N vWD. The binding of FVIII to vWF in 69 patients, 36 with type 1 vWD, 32 with mild haemophilia A and one possible haemophilia A carrier with low FVIII levels was studied. Of these, six were found to have reduced binding (five type 1 vWD, one possible haemophilia A carrier), DNA was extracted from these patients and exons 18-23 of the vWF gene encoding the FVIII binding region of vWF were analysed. After direct sequencing and chemical cleavage mismatch detection, a Thr28Met mutation was detected in two unrelated individuals, one of whom appears to be a compound heterozygote for the mutation and a null allele. No mutations were found in the region of the vWF gene encoding the FVIII binding region of vWF in the other four patients


2021 ◽  
Vol 15 (1) ◽  
Author(s):  
S. Mezinska ◽  
L. Gallagher ◽  
M. Verbrugge ◽  
E.M. Bunnik

Abstract Background Genomic research on neurodevelopmental disorders (NDDs), particularly involving minors, combines and amplifies existing research ethics issues for biomedical research. We performed a review of the literature on the ethical issues associated with genomic research involving children affected by NDDs as an aid to researchers to better anticipate and address ethical concerns. Results Qualitative thematic analysis of the included articles revealed themes in three main areas: research design and ethics review, inclusion of research participants, and communication of research results. Ethical issues known to be associated with genomic research in general, such as privacy risks and informed consent/assent, seem especially pressing for NDD participants because of their potentially decreased cognitive abilities, increased vulnerability, and stigma associated with mental health problems. Additionally, there are informational risks: learning genetic information about NDD may have psychological and social impact, not only for the research participant but also for family members. However, there are potential benefits associated with research participation, too: by enrolling in research, the participants may access genetic testing and thus increase their chances of receiving a (genetic) diagnosis for their neurodevelopmental symptoms, prognostic or predictive information about disease progression or the risk of concurrent future disorders. Based on the results of our review, we developed an ethics checklist for genomic research involving children affected by NDDs. Conclusions In setting up and designing genomic research efforts in NDD, researchers should partner with communities of persons with NDDs. Particular attention should be paid to preventing disproportional burdens of research participation of children with NDDs and their siblings, parents and other family members. Researchers should carefully tailor the information and informed consent procedures to avoid therapeutic and diagnostic misconception in NDD research. To better anticipate and address ethical issues in specific NDD studies, we suggest researchers to use the ethics checklist for genomic research involving children affected by NDDs presented in this paper.


2021 ◽  
pp. 1-7
Author(s):  
Janna-Lisa Velthaus ◽  
Peter Iglauer ◽  
Ronald Simon ◽  
Carsten Bokemeyer ◽  
Peter Bannas ◽  
...  

<b><i>Introduction:</i></b> The prognosis of pancreatic cancer has improved only modestly in recent years. This is partly due to the lack of development in precision oncology including immune oncology in this entity. Rearrangements of the proto-oncogene tyrosine protein kinase <i>ROS1</i> gene represent driver alterations found especially in lung cancer. Tyrosine kinase inhibitors (TKI) with activity against ROS1 including lorlatinib substantially improved the outcome of this patient population. Anecdotal evidence reports treatment of pancreatic cancer harboring <i>ROS1</i> fusions with ROS1 TKI, but data concerning treatment of patients with <i>ROS1</i> point mutations are lacking. <b><i>Case Presentation:</i></b> This case describes a pancreatic cancer patient harboring a <i>ROS1</i> point mutation that occurred without an underlying <i>ROS1</i> rearrangement and thus not in the resistance situation. The heavily pretreated patient showed a strong decrease of the tumor biomarkers (CA19-9 and CEA) and radiologically a durable stable disease to the targeted treatment with lorlatinib, thereby achieving a progression-free survival of 12 months. <b><i>Conclusion:</i></b> Our data are the first to show a clinical benefit from targeted treatment with ROS1 TKI in a cancer patient with a thus far undescribed <i>ROS1</i> point mutation without a concomitant <i>ROS1</i> rearrangement. Furthermore, they indicate that <i>ROS1</i> could be an oncogenic driver in pancreatic cancer. This subgroup could be eligible for targeted treatments, which may contribute to the urgently needed improvement in patient outcome.


2000 ◽  
Vol 346 (3) ◽  
pp. 785-791 ◽  
Author(s):  
David R. BROWN

The inherited prion diseases such as Gerstmann-Sträussler-Scheinker syndrome (GSS) are linked to point mutations in the gene coding for the cellular isoform of the prion protein (PrPC). One particular point mutation A117V (Ala117 → Val) is linked to a variable pathology that usually includes deposition of neurofibrillary tangles. A prion protein peptide carrying this point mutation [PrP106-126(117V)] was generated and compared with a peptide based on the normal human sequence [PrP106-126(117A)]. The inclusion of this point mutation increased the toxicity of PrP106-126 which could be linked to an increased β-sheet content. An assay of microtubule formation in the presence of tau indicated that PrP106-126 decreased the rate of microtubule formation that could be related to the displacement of tau. PrP106-126 carrying the 117 mutation was more efficient at inhibiting microtubule formation. These results suggest a possible mechanism of toxicity for protein carrying this mutation via destabilization of the cytoskeleton and deposition of tau in filaments, as observed in GSS.


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