Retrieving individual tree heights from a point cloud generated with optical imagery from an unmanned aerial vehicle (UAV)

Individual tree height (ITH) is one of the most important vertical structure parameters of a forest. Field measurement and laser scanning are very expensive for large forests. In this paper, we propose a cost-effective method to acquire ITHs in a forest using the optical overlapping images captured by an unmanned aerial vehicle (UAV). The data sets, including a point cloud, a digital surface model (DSM), and a digital orthorectified map (DOM), were produced from the UAV imagery. The canopy height model (CHM) was obtained by subtracting the digital elevation model (DEM) from the DSM removed of low vegetation. Object-based image analysis was used to extract individual tree crowns (ITCs) from the DOM, and ITHs were initially extracted by overlaying ITC outlines on the CHM. As the extracted ITHs were generally slightly shorter than the measured ITHs, a linear relationship was established between them. The final ITHs of the test site were retrieved by inputting extracted ITHs into the linear regression model. As a result, the coefficient of determination (R2), the root mean square error (RMSE), the mean absolute error (MAE), and the mean relative error (MRE) of the retrieved ITHs against the measured ITHs were 0.92, 1.08 m, 0.76 m, and 0.08, respectively.

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Individual Tree Detection in a Eucalyptus Plantation Using Unmanned Aerial Vehicle (UAV)-LiDAR

Remote Sensing ◽

10.3390/rs12050885 ◽

2020 ◽

Vol 12 (5) ◽

pp. 885 ◽

Cited By ~ 4

Author(s):

Juan Picos ◽

Guillermo Bastos ◽

Daniel Míguez ◽

Laura Alonso ◽

Julia Armesto

Keyword(s):

Unmanned Aerial Vehicle ◽

Point Cloud ◽

Single Point ◽

Tree Height ◽

Individual Tree ◽

Eucalyptus Plantation ◽

Local Maxima ◽

Eucalypt Plantations ◽

Aerial Vehicle ◽

Precision Forestry

The present study addresses the tree counting of a Eucalyptus plantation, the most widely planted hardwood in the world. Unmanned aerial vehicle (UAV) light detection and ranging (LiDAR) was used for the estimation of Eucalyptus trees. LiDAR-based estimation of Eucalyptus is a challenge due to the irregular shape and multiple trunks. To overcome this difficulty, the layer of the point cloud containing the stems was automatically classified and extracted according to the height thresholds, and those points were horizontally projected. Two different procedures were applied on these points. One is based on creating a buffer around each single point and combining the overlapping resulting polygons. The other one consists of a two-dimensional raster calculated from a kernel density estimation with an axis-aligned bivariate quartic kernel. Results were assessed against the manual interpretation of the LiDAR point cloud. Both methods yielded a detection rate (DR) of 103.7% and 113.6%, respectively. Results of the application of the local maxima filter to the canopy height model (CHM) intensely depends on the algorithm and the CHM pixel size. Additionally, the height of each tree was calculated from the CHM. Estimates of tree height produced from the CHM was sensitive to spatial resolution. A resolution of 2.0 m produced a R2 and a root mean square error (RMSE) of 0.99 m and 0.34 m, respectively. A finer resolution of 0.5 m produced a more accurate height estimation, with a R2 and a RMSE of 0.99 and 0.44 m, respectively. The quality of the results is a step toward precision forestry in eucalypt plantations.

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Individual Tree Diameter Estimation in Small-Scale Forest Inventory Using UAV Laser Scanning

Remote Sensing ◽

10.3390/rs13010024 ◽

2020 ◽

Vol 13 (1) ◽

pp. 24

Author(s):

Yuanshuo Hao ◽

Faris Rafi Almay Widagdo ◽

Xin Liu ◽

Ying Quan ◽

Lihu Dong ◽

...

Keyword(s):

Unmanned Aerial Vehicle ◽

Random Effects ◽

Forest Inventory ◽

Point Cloud ◽

Laser Scanning ◽

Small Scale ◽

Individual Tree ◽

Scanning Angle ◽

Tree Diameter ◽

Aerial Vehicle

Unmanned aerial vehicle laser scanning (UAVLS) systems present a relatively new means of remote sensing and are increasingly applied in the field of forest ecology and management. However, one of the most essential parameters in forest inventory, tree diameter at breast height (DBH), cannot be directly extracted from aerial point cloud data due to the limitations of scanning angle and canopy obstruction. Therefore, in this study DBH-UAVLS point cloud estimation models were established using a generalized nonlinear mixed-effects (NLME) model. The experiments were conducted using Larix olgensis as the subject species, and a total of 8364 correctly delineated trees from UAVLS data within 118 plots across 11 sites were used for DBH modeling. Both tree- and plot-level metrics were obtained using light detection and ranging (LiDAR) and were used as the models’ independent predictors. The results indicated that the addition of site-level random effects significantly improved the model fitting. Compared with nonparametric modeling approaches (random forest and k-nearest neighbors) and uni- or multivariable weighted nonlinear least square regression through leave-one-site-out cross-validation, the NLME model with local calibration achieved the lowest root mean square error (RMSE) values (1.94 cm) and the most stable prediction across different sites. Using the site in a random-effects model improved the transferability of LiDAR-based DBH estimation. The best linear unbiased predictor (BLUP), used to conduct local model calibration, led to an improvement in the models’ performance as the number of field measurements increased. The research provides a baseline for unmanned aerial vehicle (UAV) small-scale forest inventories and might be a reasonable alternative for operational forestry.

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Adjudicating Perspectives on Forest Structure: How Do Airborne, Terrestrial, and Mobile Lidar-Derived Estimates Compare?

Remote Sensing ◽

10.3390/rs13122297 ◽

2021 ◽

Vol 13 (12) ◽

pp. 2297

Author(s):

Jonathon J. Donager ◽

Andrew J. Sánchez Meador ◽

Ryan C. Blackburn

Keyword(s):

Ponderosa Pine ◽

Laser Scanning ◽

Canopy Cover ◽

Basal Area ◽

Tree Height ◽

Absolute Error ◽

Forest Monitoring ◽

Individual Tree ◽

Structural Configurations ◽

Individual Trees

Applications of lidar in ecosystem conservation and management continue to expand as technology has rapidly evolved. An accounting of relative accuracy and errors among lidar platforms within a range of forest types and structural configurations was needed. Within a ponderosa pine forest in northern Arizona, we compare vegetation attributes at the tree-, plot-, and stand-scales derived from three lidar platforms: fixed-wing airborne (ALS), fixed-location terrestrial (TLS), and hand-held mobile laser scanning (MLS). We present a methodology to segment individual trees from TLS and MLS datasets, incorporating eigen-value and density metrics to locate trees, then assigning point returns to trees using a graph-theory shortest-path approach. Overall, we found MLS consistently provided more accurate structural metrics at the tree- (e.g., mean absolute error for DBH in cm was 4.8, 5.0, and 9.1 for MLS, TLS and ALS, respectively) and plot-scale (e.g., R2 for field observed and lidar-derived basal area, m2 ha−1, was 0.986, 0.974, and 0.851 for MLS, TLS, and ALS, respectively) as compared to ALS and TLS. While TLS data produced estimates similar to MLS, attributes derived from TLS often underpredicted structural values due to occlusion. Additionally, ALS data provided accurate estimates of tree height for larger trees, yet consistently missed and underpredicted small trees (≤35 cm). MLS produced accurate estimates of canopy cover and landscape metrics up to 50 m from plot center. TLS tended to underpredict both canopy cover and patch metrics with constant bias due to occlusion. Taking full advantage of minimal occlusion effects, MLS data consistently provided the best individual tree and plot-based metrics, with ALS providing the best estimates for volume, biomass, and canopy cover. Overall, we found MLS data logistically simple, quickly acquirable, and accurate for small area inventories, assessments, and monitoring activities. We suggest further work exploring the active use of MLS for forest monitoring and inventory.

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Remote Measurement of Apple Orchard Canopy Information Using Unmanned Aerial Vehicle Photogrammetry

Agronomy ◽

10.3390/agronomy9110774 ◽

2019 ◽

Vol 9 (11) ◽

pp. 774 ◽

Cited By ~ 1

Author(s):

Sun ◽

Wang ◽

Ding ◽

Lu ◽

Sun

Keyword(s):

Unmanned Aerial Vehicle ◽

Point Cloud ◽

Imaging System ◽

Cloud Model ◽

Tree Canopy ◽

Coefficient Of Determination ◽

Remote Measurement ◽

Probability Density Estimation ◽

Point Cloud Model ◽

Aerial Vehicle

Information on fruit tree canopies is important for decision making in orchard management, including irrigation, fertilization, spraying, and pruning. An unmanned aerial vehicle (UAV) imaging system was used to establish an orchard three-dimensional (3D) point-cloud model. A row-column detection method was developed based on the probability density estimation and rapid segmentation of the point-cloud data for each apple tree, through which the tree canopy height, H, width, W, and volume, V, were determined for remote orchard canopy evaluation. When the ground sampling distance (GSD) was in the range of 2.13 to 6.69 cm/px, the orchard point-cloud model had a measurement accuracy of 100.00% for the rows and 90.86% to 98.20% for the columns. The coefficient of determination, R2, was in the range of 0.8497 to 0.9376, 0.8103 to 0.9492, and 0.8032 to 0.9148, respectively, and the average relative error was in the range of 1.72% to 3.42%, 2.18% to 4.92%, and 7.90% to 13.69%, respectively, among the H, W, and V values measured manually and by UAV photogrammetry. The results showed that UAV visual imaging is suitable for 3D morphological remote canopy evaluations, facilitates orchard canopy informatization, and contributes substantially to efficient management and control of modern standard orchards.

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UNMANNED AERIAL VEHICLE LASER SCANNING FOR EROSION MONITORING IN ALPINE GRASSLAND

ISPRS Annals of Photogrammetry Remote Sensing and Spatial Information Sciences ◽

10.5194/isprs-annals-iv-2-w5-405-2019 ◽

2019 ◽

Vol IV-2/W5 ◽

pp. 405-412 ◽

Cited By ~ 2

Author(s):

A. Mayr ◽

M. Bremer ◽

M. Rutzinger ◽

C. Geitner

Keyword(s):

Unmanned Aerial Vehicle ◽

Point Cloud ◽

Laser Scanning ◽

Test Site ◽

Satellite System ◽

Alpine Grassland ◽

Proof Of Concept ◽

Aerial Vehicle ◽

Geomorphological Changes ◽

Global Navigation Satellite

Abstract. With this contribution we assess the potential of unmanned aerial vehicle (UAV) based laser scanning for monitoring shallow erosion in Alpine grassland. A 3D point cloud has been acquired by unmanned aerial vehicle laser scanning (ULS) at a test site in the subalpine/alpine elevation zone of the Dolomites (South Tyrol, Italy). To assess its accuracy, this point cloud is compared with (i) differential global navigation satellite system (GNSS) reference measurements and (ii) a terrestrial laser scanning (TLS) point cloud. The ULS point cloud and an airborne laser scanning (ALS) point cloud are rasterized into digital surface models (DSMs) and, as a proof-of-concept for erosion quantification, we calculate the elevation difference between the ULS DSM from 2018 and the ALS DSM from 2010. For contiguous spatial objects of elevation change, the volumetric difference is calculated and a land cover class (bare earth, grassland, trees), derived from the ULS reflectance and RGB colour, is assigned to each change object. In this test, the accuracy and density of the ALS point cloud is mainly limiting the detection of geomorphological changes. Nevertheless, the plausibility of the results is confirmed by geomorphological interpretation and documentation in the field. A total eroded volume of 672&thinsp;m3 is estimated for the test site (48&thinsp;ha). Such volumetric estimates of erosion over multiple years are a key information for improving sustainable soil management. Based on this proof-of-concept and the accuracy analysis, we conclude that repeated ULS campaigns are a well-suited tool for erosion monitoring in Alpine grassland.

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Canopy Extraction and Height Estimation of Trees in a Shelter Forest Based on Fusion of an Airborne Multispectral Image and Photogrammetric Point Cloud

Journal of Sensors ◽

10.1155/2021/5519629 ◽

2021 ◽

Vol 2021 ◽

pp. 1-13

Author(s):

Xuewen Wang ◽

Qingzhan Zhao ◽

Feng Han ◽

Jianxin Zhang ◽

Ping Jiang

Keyword(s):

Point Cloud ◽

Object Oriented ◽

Tree Height ◽

Multispectral Image ◽

Support Vector ◽

Surface Model ◽

Object Oriented Method ◽

3D Point Cloud ◽

Individual Tree ◽

Height Estimation

To reduce data acquisition cost, this study proposed a novel method of individual tree height estimation and canopy extraction based on fusion of an airborne multispectral image and photogrammetric point cloud. A fixed-wing drone was deployed to acquire the true color and multispectral images of a shelter forest. The Structure-from-Motion (SfM) algorithm was used to reconstruct the 3D point cloud of the canopy. The 3D point cloud was filtered to acquire the ground point cloud and then interpolated to a Digital Elevation Model (DEM) using the Radial Basis Function Neural Network (RBFNN). The DEM was subtracted from the Digital Surface Model (DSM) generated from the original point cloud to get the canopy height model (CHM). The CHM was processed for the crown extraction using local maximum filters and watershed segmentation. Then, object-oriented methods were employed in the combination of 12 bands and CHM for image segmentation. To extract the tree crown, the Support Vector Machine (SVM) algorithm was used. The result of the object-oriented method was vectorized and superimposed on the CHM to estimate the tree height. Experimental results demonstrated that it is efficient to employ point cloud and the proposed approach has great potential in the tree height estimation. The proposed object-oriented method based on fusion of a multispectral image and CHM effectively reduced the oversegmentation and undersegmentation, with an increase in the F -score by 0.12–0.17. Our findings provided a reference for the health and change monitoring of shelter forests as well.

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The Feasibility of Modelling the Crown Profile of Larix olgensis Using Unmanned Aerial Vehicle Laser Scanning Data

Sensors ◽

10.3390/s20195555 ◽

2020 ◽

Vol 20 (19) ◽

pp. 5555 ◽

Cited By ~ 1

Author(s):

Ying Quan ◽

Mingze Li ◽

Zhen Zhen ◽

Yuanshuo Hao ◽

Bin Wang

Keyword(s):

Unmanned Aerial Vehicle ◽

Laser Scanning ◽

Low Cost ◽

Pearson Correlation ◽

Point Clouds ◽

Larix Olgensis ◽

Individual Tree ◽

Profile Fitting ◽

Aerial Vehicle ◽

Individual Trees

Unmanned aerial vehicle (UAV) laser scanning, as an emerging form of near-ground light detection and ranging (LiDAR) remote sensing technology, is widely used for crown structure extraction due to its flexibility, convenience, and high point density. Herein, we evaluated the feasibility of using a low-cost UAV-LiDAR system to extract the fine-scale crown profile of Larix olgensis. Specifically, individual trees were isolated from LiDAR point clouds and then stratified from the point clouds of segmented individual tree crowns at 0.5 m intervals to obtain the width percentiles of each layer as profile points. Four equations (the parabola, Mitscherlich, power, and modified beta equations) were then applied to model the profiles of the entire and upper crown. The results showed that a region-based hierarchical cross-section analysis algorithm can successfully delineate 77.4% of the field-measured trees in high-density (>2400 trees/ha) forest stands. The crown profile generated with the 95th width percentile was adequate when compared with the predicted value of the existing field-based crown profile model (the Pearson correlation coefficient (ρ) was 0.864, root mean square error (RMSE) = 0.3354 m). The modified beta equation yielded slightly better results than the other equations for crown profile fitting and explained 85.9% of the variability in the crown radius for the entire crown and 87.8% of this variability for the upper crown. Compared with the cone and 3D convex hull volumes, the crown volumes predicted by our profile models had significantly smaller errors. The results revealed that the crown profile can be well described by using UAV-LiDAR, providing a novel way to obtain crown profile information without destructive sampling and showing the potential of the use of UAV-LiDAR in future forestry investigations and monitoring.

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Estimating forest uniformity in Eucalyptus spp. and Pinus taeda L. stands using field measurements and structure from motion point clouds generated from unmanned aerial vehicle (UAV) data collection

Forest Systems ◽

10.5424/fs/2018272-11713 ◽

2018 ◽

Vol 27 (2) ◽

pp. e005 ◽

Cited By ~ 5

Author(s):

Ângela M. K. Hentz ◽

Carlos A. Silva ◽

Ana P. Dalla Corte ◽

Sylvio P. Netto ◽

Michael P. Strager ◽

...

Keyword(s):

Pinus Taeda ◽

Unmanned Aerial Vehicle ◽

Digital Terrain Model ◽

Tree Height ◽

Point Clouds ◽

Forest Monitoring ◽

Surface Model ◽

3D Point Clouds ◽

Aerial Vehicle ◽

Pinus Taeda L

Aim of study: In this study we applied 3D point clouds generated by images obtained from an Unmanned Aerial Vehicle (UAV) to evaluate the uniformity of young forest stands.Area of study: Two commercial forest stands were selected, with two plots each. The forest species studied were Eucalyptus spp. and Pinus taeda L. and the trees had an age of 1.5 years.Material and methods: The individual trees were detected based on watershed segmentation and local maxima, using the spectral values stored in the point cloud. After the tree detection, the heights were calculated using two approaches, in the first one using the Digital Surface Model (DSM) and a Digital Terrain Model, and in the second using only the DSM. We used the UAV-derived heights to estimate an uniformity index.Main results: The trees were detected with a maximum 6% of error. However, the height was underestimated in all cases, in an average of 1 and 0.7 m for Pinus and Eucalyptus stands. We proposed to use the models built herein to estimate tree height, but the regression models did not explain the variably within the data satisfactorily. Therefore, the uniformity index calculated using the direct UAV-height values presented results close to the field inventory, reaching better results when using the second height approach (error ranging 2.8-7.8%).Research highlights: The uniformity index using the UAV-derived height from the proposed methods was close to the values obtained in field. We noted the potential for using UAV imagery in forest monitoring.

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Spatial ETL for 3D Building Modelling Based on Unmanned Aerial Vehicle Data in Semi-Urban Areas

Remote Sensing ◽

10.3390/rs12121972 ◽

2020 ◽

Vol 12 (12) ◽

pp. 1972 ◽

Cited By ~ 1

Author(s):

Urška Drešček ◽

Mojca Kosmatin Fras ◽

Jernej Tekavec ◽

Anka Lisec

Keyword(s):

Unmanned Aerial Vehicle ◽

Spatial Data ◽

Urban Areas ◽

Point Cloud ◽

Process Model ◽

Laser Scanning ◽

3D City Models ◽

Aerial Vehicle ◽

Spatial Etl ◽

City Models

This paper provides the innovative approach of using a spatial extract, transform, load (ETL) solution for 3D building modelling, based on an unmanned aerial vehicle (UAV) photogrammetric point cloud. The main objective of the paper is to present the holistic workflow for 3D building modelling, emphasising the benefits of using spatial ETL solutions for this purpose. Namely, despite the increasing demands for 3D city models and their geospatial applications, the generation of 3D city models is still challenging in the geospatial domain. Advanced geospatial technologies provide various possibilities for the mass acquisition of geospatial data that is further used for 3D city modelling, but there is a huge difference in the cost and quality of input data. While aerial photogrammetry and airborne laser scanning involve high costs, UAV photogrammetry has brought new opportunities, including for small and medium-sized companies, by providing a more flexible and low-cost source of spatial data for 3D modelling. In our data-driven approach, we use a spatial ETL solution to reconstruct a 3D building model from a dense image matching point cloud which was obtained beforehand from UAV imagery. The results are 3D building models in a semantic vector format consistent with the OGC CityGML standard, Level of Detail 2 (LOD2). The approach has been tested on selected buildings in a simple semi-urban area. We conclude that spatial ETL solutions can be efficiently used for 3D building modelling from UAV data, where the data process model developed allows the developer to easily control and manipulate each processing step.

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COMPARISON AND TIME SERIES ANALYSIS OF LANDSLIDE DISPLACEMENT MAPPED BY AIRBORNE, TERRESTRIAL AND UNMANNED AERIAL VEHICLE BASED PLATFORMS

ISPRS Annals of Photogrammetry Remote Sensing and Spatial Information Sciences ◽

10.5194/isprs-annals-iv-2-w5-421-2019 ◽

2019 ◽

Vol IV-2/W5 ◽

pp. 421-428 ◽

Cited By ~ 3

Author(s):

J. Pfeiffer ◽

T. Zieher ◽

M. Rutzinger ◽

M. Bremer ◽

V. Wichmann

Keyword(s):

Time Series ◽

Unmanned Aerial Vehicle ◽

Point Cloud ◽

Laser Scanning ◽

Point Clouds ◽

Image Correlation ◽

Landslide Monitoring ◽

Displacement Vectors ◽

Aerial Vehicle ◽

Displacement Patterns

Abstract. Slow moving deep-seated gravitational slope deformations are threatening infrastructure and economic wellbeing in mountainous areas. Accelerating landslides may end up in a catastrophic slope failure in terms of rapid rock avalanches. Continuous landslide monitoring enables the identification of critical acceleration thresholds, which are required in natural hazard management. Among many existing monitoring methods, laser scanning is a cost effective method providing 3D data for deriving three dimensional and areawide displacement vectors at certain morphological structures travelling on top of the landslide. Comparing displacements between selected observation periods allows the spatial interpretation of landslide acceleration or deceleration. This contribution presents five laser scanning datasets of the active Reissenschuh landslide (Tyrol, Austria) acquired by airborne laser scanning (ALS), terrestrial laser scanning (TLS) and Unmanned aerial vehicle Laser Scanning (ULS) sensors. Three observation periods with acquisition dates between 2008 and 2018 are used to derive area-wide displacement vectors. To ensure a most suitable displacement derivation between ALS, TLS and ULS platforms, an analysis investigating point cloud features within varying search radii is carried out, in order to identify a neighbourhood where common surfaces are represented platform independent or differences between the platforms are minimized. Consequent displacement vector estimation is done by ICP-Matching using morphological structures within the high resolution TLS and ULS point cloud. Displacements from the lower resolution ALS point cloud and TLS point cloud were determined using a modified version of the well-known image correlation (IMCORR) method working with point cloud derived shaded relief images combined with digital terrain models (DTM). The interplatform compatible analyses of the multi-temporal laser scanning data allows to quantify the area-wide displacement patterns of the landslide. Furthermore, changes of these displacement patterns over time are assessed area-wide. Spatially varying areas of landslide acceleration and deceleration in the order of &plusmn;15&thinsp;cm&thinsp;a&minus;1 between 2008 and 2017 and an area wide acceleration of up to 20&thinsp;cm&thinsp;a&minus;1 between 2016 and 2018 are identified. Continuing the existing time series with future ULS acquisitions may enable a more complete and detailed displacement monitoring using entirely represented objects within the point clouds.

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