Bomb radiocarbon age validation of Pacific ocean perch (Sebastes alutus) using new statistical methods

2008 ◽  
Vol 65 (6) ◽  
pp. 1101-1112 ◽  
Author(s):  
Craig R. Kastelle ◽  
Daniel K. Kimura ◽  
Betty J. Goetz

We used bomb-produced radiocarbon (14C) to validate ages of Pacific ocean perch ( Sebastes alutus ), which are routinely estimated with the cut-and-burn method at the Alaska Fisheries Science Center (Seattle, Washington, USA). New statistical methods to compare Δ14C in validation samples with a reference chronology are introduced: (i) calculating confidence intervals around the LOESS-smoothed Δ14C reference chronology using simultaneous inference; (ii) purposely adding biases to the validation sample ages and then analyzing the sum of squared residuals of the validation samples’ Δ14C about the LOESS-smoothed reference chronology; and (iii) standardizing the Δ14C measurements from the validation sample to better fit the reference chronology. Standardized Δ14C measurements are particularly useful when researchers suspect that environmental and biological differences between the validation samples and the reference chronology may exist that affect the level, but not the timing, of Δ14C in the samples. These new methods can be applied simultaneously. Two previous bomb radiocarbon studies on canary rockfish ( Sebastes pinniger ) and black drum ( Pogonias cromis ) were reanalyzed, further illustrating the usefulness of these new methods.


Fisheries ◽  
2019 ◽  
Vol 44 (11) ◽  
pp. 524-533 ◽  
Author(s):  
Phillip J. Sanchez ◽  
Jeffrey P. Pinsky ◽  
Jay R. Rooker


2009 ◽  
Vol 156 (5) ◽  
pp. 1029-1037 ◽  
Author(s):  
Raouf W. Kilada ◽  
Steven E. Campana ◽  
Dale Roddick


2019 ◽  
Vol 70 (12) ◽  
pp. 1781 ◽  
Author(s):  
John M. Casselman ◽  
Cynthia M. Jones ◽  
Steven E. Campana

The growth rates of freshwater fish in the Arctic would be expected to be very low, but some previous studies of lake whitefish (Coregonus clupeaformis) have reported relatively rapid growth and longevity estimates of less than 15 years. We used bomb radiocarbon chronologies to validate an ageing method based on otolith sections for lake whitefish in both an unexploited Arctic lake (MacAlpine Lake; longevity 50 years) and a lightly exploited temperate population (Lake Simcoe; longevity 49 years). Our results confirm previous suggestions that other ageing methods can seriously underestimate lake whitefish age after ~5–8 years. A Chapman–Robson estimate of instantaneous natural mortality rate (M) of 0.12 in the unfished Arctic lake was one-quarter of that measured in other Arctic lake whitefish populations, and one-third of that predicted by Pauly’s (1980) growth–temperature equation. The high estimates of M reported in other whitefish studies and by Pauly’s equation are almost certainly due to their being based on (incorrect) scale or surface otolith ages. Radiocarbon dating confirms that any attempt at predicting sustainable production for long-lived freshwater fishes like lake whitefish will need to be based on accurate ages derived from otolith sections.



2021 ◽  
Author(s):  
Yangrong Ling ◽  
Lauren Biermann ◽  
Mark Manuel ◽  
Ellen Ramirez ◽  
Austin Coates ◽  
...  

<p><span>Since 2014, the NOAA Satellite Analysis Branch has used high resolution optical satellite imagery in an effort to detect ghost nets (derelict fishing gear) and other large plastic debris in the Pacific Ocean and its atolls in support of clean-up efforts (by the NOAA Pacific Islands Fisheries Science Center, Ocean Voyages Institute, etc.). Until recently, reliable detection has proven challenging. With the application of Worldview imagery matched to <em>in situ</em> information on known net locations, we have been able to extract spectral signatures of floating plastics and use these to detect and identify other instances of plastic debris. Using ENVI’s Spectral Angle Mapper (SAM) target detection method, a number of likely locations of nets/plastics in the Pearl and Hermes atoll in the Northwestern Hawaiian Islands (NWHI) were highlighted. The resulting locations of the 41 debris detections were strikingly similar to the distributions along the coast reported in surveys, and are consistent with those that would be expected due to the seasonal ocean currents. This satellite imagery analysis procedure will be repeated shortly before the next NWHI clean-up effort, which will better enable us to support the removal of ghost nets and other marine plastics, and also assess the accuracy and rapid reproducibility of the technique.</span></p>



2019 ◽  
Vol 3 (2) ◽  
pp. 274-306 ◽  
Author(s):  
Ruben Sanchez-Romero ◽  
Joseph D. Ramsey ◽  
Kun Zhang ◽  
Madelyn R. K. Glymour ◽  
Biwei Huang ◽  
...  

We test the adequacies of several proposed and two new statistical methods for recovering the causal structure of systems with feedback from synthetic BOLD time series. We compare an adaptation of the first correct method for recovering cyclic linear systems; Granger causal regression; a multivariate autoregressive model with a permutation test; the Group Iterative Multiple Model Estimation (GIMME) algorithm; the Ramsey et al. non-Gaussian methods; two non-Gaussian methods by Hyvärinen and Smith; a method due to Patel et al.; and the GlobalMIT algorithm. We introduce and also compare two new methods, Fast Adjacency Skewness (FASK) and Two-Step, both of which exploit non-Gaussian features of the BOLD signal. We give theoretical justifications for the latter two algorithms. Our test models include feedback structures with and without direct feedback (2-cycles), excitatory and inhibitory feedback, models using experimentally determined structural connectivities of macaques, and empirical human resting-state and task data. We find that averaged over all of our simulations, including those with 2-cycles, several of these methods have a better than 80% orientation precision (i.e., the probability of a directed edge is in the true structure given that a procedure estimates it to be so) and the two new methods also have better than 80% recall (probability of recovering an orientation in the true structure).



2014 ◽  
Vol 8 ◽  
Author(s):  
Steven E Campana ◽  
Robert EA Stewart

Methods for confirming the accuracy of age determination methods are reasonably well established in fishes, but the millions of routine age determinations which take place every year require their own quality control protocols. In contrast, methods for ensuring accuracy in age determination of monodontids and other marine mammals are still being developed. Here we review the basis and application of bomb radiocarbon to marine mammal age validation, highlighting its value for providing unambiguous estimates of age for belugas and other long-lived animals which form growth bands. Bomb radiocarbon is particularly useful for marine mammals, given that the age of an individual animal can be determined to within ±1-3 years, as long as it was alive during the 1960s. However, ongoing age determinations require careful monitoring to ensure that age interpretations remain consistent across ages and through time. Quality control protocols using reference collections of ageing material, in conjunction with age bias plots and measures of precision, are capable of detecting virtually all of the systematic ageing errors that often occur once age determinations of an animal become routine.



<em>Abstract.</em>—The Cooperative Tagging Center (CTC) of the National Marine Fisheries Service’s Southeast Fisheries Science Center operates one of the largest and oldest fish tagging programs of its type in the world. Since 1954, more than 35,000 recreational and commercial fishing constituents have voluntarily participated in the CTC, and this has resulted in tagging more than 245,000 fish of 123 species. Although some tagging activities have been conducted by scientists, most of the tag release and recovery activities were achieved by recreational and commercial fishery constituents. Five large highly migratory species have historically represented the Program’s primary target species, including Atlantic bluefin tuna <em> Thunnus thynnus</em>, blue marlin <em> Makaira nigricans</em>, white marlin <em> Tetrapturus albidus</em>, sailfish <em> Istiophorus platypterus</em>, and broadbill swordfish <em> Xiphias gladius</em>. Tagging equipment and procedures for catching, tagging, and resuscitation of species too large to be brought aboard fishing vessels have evolved and improved considerably over the years. This paper presents a review of the development of the most efficient tagging, handling, and dehooking techniques used on a variety of large, highly migratory species in the CTC. In addition, the results of a comparative tag retention study on billfish are presented, comparing stainless steel dart tags used for nearly 30 years with a hydroscopic nylon double-barb dart tag, recently developed in conjunction with The Billfish Foundation. Recommendations are made on the best techniques, procedures, and equipment for in-water tagging of large, highly migratory species.



2016 ◽  
Vol 74 (1) ◽  
pp. 170-179 ◽  
Author(s):  
Charles F. Adams

The spatial distribution of butterfish (Peprilus triacanthus) in the Northwest Atlantic Ocean was investigated using a suite of spatial indicators based on Northeast Fisheries Science Center spring and fall bottom trawl survey data, 1982–2013. In the spring, ages 2 and 3 were found farther northeast and deeper than age 1 butterfish, while in the fall, age 3 butterfish were found farther northeast and deeper than ages 0 and 1. There was no significant northward movement of butterfish in spring or fall over the course of either time-series. However, there was a significant increase in the area occupied by ages 1–3 in the spring that was correlated with surface temperature. This illustrates that responses to climate change may be manifested as range expansions, rather than poleward movement of the centre of gravity (i.e. bivariate weighted mean location of the population). Two changes were observed over the course of the fall time series, both for ages 1 and 2: increased spatial dispersion; and a decrease in depth. The former result would have been masked, while the latter would have been erroneously generalized to all age classes, if an age-specific analysis had not been done. This study demonstrates the importance of an age-based and seasonal analysis. It is also shown how a spatial distribution analyses can inform stock assessments by providing insights into diverging survey indices and availability to surveys in general. Similarly, spatial distribution analyses can be used to verify the spatial equilibrium assumption for the calculation of biological reference points.



2019 ◽  
Vol 76 (4) ◽  
pp. 1162-1176 ◽  
Author(s):  
Ann Bucklin ◽  
Heidi D Yeh ◽  
Jennifer M Questel ◽  
David E Richardson ◽  
Bo Reese ◽  
...  

Abstract Biodiversity of zooplankton is central to the functioning of ocean ecosystems, yet morphological taxonomic analysis requires teams of experts and detailed examination of many samples. Metabarcoding (DNA sequencing of short amplified regions of one or a few genes from environmental samples) is a powerful tool for analysis of the composition and diversity of natural communities. The 18S rRNA V9 hypervariable region was sequenced for 26 zooplankton samples collected from the Gulf of Maine, Georges Bank, and Mid-Atlantic Bight during ecosystem monitoring surveys by the U.S. Northeast Fisheries Science Center during 2002–2012. A total of 7 648 033 sequences and 22 072 operational taxonomic units (OTUs) were identified and classified into 28 taxonomic groups of plankton. Comparative analysis of molecular (V9 sequence numbers) and morphological (abundance counts) focused on seven taxonomic groups and revealed similar patterns of variation among years and regions. Sequence numbers and abundance counts showed positive correlation for all groups, with significant correlations (p &lt; 0.05) for Calanoida, Gastropoda, and Chaetognatha. Shannon diversity index values calculated using sequence numbers and abundance counts showed highly significant correlation (r = 0.625; p &lt; 0.001) across all regions during 2002–2012. This study demonstrates the potential of metabarcoding for time-series analysis of zooplankton biodiversity, ocean ecosystem assessment, and fisheries management.



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