scholarly journals Phylogenetic Relationships among Palearctic and Nearctic Whitefish (Coregonus sp.) Populations as Revealed by Mitochondrial DNA Variation

1994 ◽  
Vol 51 (S1) ◽  
pp. 240-251 ◽  
Author(s):  
Louis Bernatchez ◽  
Julian J. Dodson

We recently documented the existence of two highly distinct mitochondrial DNA (mtDNA) phylogenetic groups of Coregonus sp. in Beringia in the absence of geographic separation. To test whether this resulted from secondary intergradation of two groups that evolved in allopatry in Eurasia and Beringia, mtDNA restriction-fragment-length polymorphisms of 210 whitefish representing 22 populations from Europe and Siberia were compared with mtDNA variation observed among 581 fish from North America. Results confirmed that Beringia represents a zone of secondary contact among endemic whitefish and a group of Eurasian origin. All Beringian populations clustered much more closely to Eurasian populations than other North American ones. We also compared mtDNA variation among Palearctic populations with that observed in North America. European populations clustered into two major mtDNA groups that exhibited a strong geographic pattern of distribution, independent of the morphological variation observed among populations: one dominated all the more northern populations and extended to Alaska–Yukon; the second largely dominated samples from central alpine lakes, and was absent from Beringia. These results suggest that central alpine lakes and northern Europe were postglacially recolonized by two genetically distinct white-fish groups that most likely evolved in allopatry followed by limited intergradation.

Waterbirds ◽  
2003 ◽  
Vol 26 (2) ◽  
pp. 196 ◽  
Author(s):  
Juliann L. Waits ◽  
Michael L. Avery ◽  
Mark E. Tobin ◽  
Paul L. Leberg

1989 ◽  
Vol 46 (12) ◽  
pp. 2074-2084 ◽  
Author(s):  
Robert D. Ward ◽  
Neil Billington ◽  
Paul D. N. Hebert

Twelve populations of walleye (Stizostedion vitreum) from the Great Lakes and three populations from northern Manitoba were screened for allozyme and mitochondrial DNA (mtDNA) variation. Nine enzyme loci known to show genetic variation were screened in all fish: five of them (Prot-4, Prot-2, Mdh-3, Idh-1, Adh) showed appreciable polymorphism. MtDNA was examined in all fish using six endonucleases that detected polymorphic sites and a further 13 endonucleases that detected only monomorphic sites. Only one of the allozyme loci (Prot-4) showed evidence of geographic patterning of allele frequencies. By contrast, the mtDNA haplotypes showed clear geographic variation. The proportion of total genetic diversity attributable to population differentiation (Gst) was three to five times greater for mtDNA than for the allozymes. Gst values for organelle genes are expected on theoretical grounds to be greater than for nuclear genes, and this expected difference may be enhanced in walleye because of the likelihood that, in this species, male-mediated gene flow exceeds that of females. The distributions of mtDNA haplotypes and estimated divergence times are consistent with the derivation of extant walleye populations from three different glacial refugia.


Genome ◽  
1993 ◽  
Vol 36 (1) ◽  
pp. 87-93 ◽  
Author(s):  
John W. Barrett ◽  
Om P. Rajora ◽  
F. C. H Yeh ◽  
Bruce P. Dancik ◽  
Curtis Strobeck

We examined variation in and around the region coding for the cytochrome c oxidase I (coxI) and ATPase 6 (atp6) genes in the mitochondrial genomes of four Populus species (P. nigra, P. deltoides, P. maximowiczii, and P. tremuloides) and the natural hybrid P. × canadensis (P. deltoides × P. nigra). Total cellular DNAs of these poplars were digested with 16 restriction endonucleases and probed with maize mtDNA-specific probes (CoxI and Atp6). The only variant observed for Atp6 was interspecific, with P. maximowiczii separated from the other species as revealed by EcoRI digestions. No intraspecific mtDNA variation was observed among individuals of P. nigra, P. maximowiczii, P. × canadensis, or P. tremuloides for the CoxI probe. However, two varieties of P. deltoides were distinct because of a single site change in the KpnI digestions, demonstrating that P. deltoides var. deltoides (eastern cottonwood) and var. occidentalis (plains cottonwood) have distinct mitochondrial genomes in the region of the coxI gene. Populus × canadensis shared the same restriction fragment patterns as its suspected maternal parent P. deltoides. Nucleotide substitutions per base in and around the coxI and atp6 genes among the Populus species and the hybrid ranged from 0.0017 to 0.0077. The interspecific estimates of nucleotide substitution per base suggested that P. tremuloides was furthest removed from P. deltoides and P. × canadensis and least diverged from P. nigra. Populus maximowiczii was placed between these two clusters.Key words: mitochondrial DNA, poplars, phylogenetics, variation, restriction fragment length polymorphisms.


1995 ◽  
Vol 127 (5) ◽  
pp. 623-629 ◽  
Author(s):  
J.C. Simon ◽  
P.D.N. Hebert ◽  
C. Carillo ◽  
R. De Melo

AbstractThe extent of allozyme variation and the amount of genetic divergence were assessed among populations of the aphid Rhopalosiphum maidis in Ontario. Allozyme analysis of individuals from 12 sites revealed no polymorphism for 32 loci. In addition, the extent of karyotypic, allozyme, and mitochondrial DNA (mtDNA) variation was examined for clones from North America, Europe, and North Africa. As previously noted, chromosome number varied in relation to the host-plant on which aphids were collected, but neither allozyme nor mtDNA patterns allowed discrimination among clones. Further work is needed to determine whether the lack of genetic diversity in R. maidis is linked with its recent introduction to North America or with its loss of a sexual phase.


The Condor ◽  
1991 ◽  
Vol 93 (1) ◽  
pp. 185-189 ◽  
Author(s):  
Robert C. Fleischer ◽  
Stephen I. Rothstein ◽  
Linda S. Miller

1990 ◽  
Vol 47 (6) ◽  
pp. 1093-1102 ◽  
Author(s):  
Neil Billington ◽  
Paul D. N. Hebert ◽  
Robert D. Ward

The percid genus Stizostedion consists of five species, three in Europe and two in North America, and is believed to have evolved in Europe and then later colonized North America. Three hypotheses exist concerning the route and timing of this colonization: a Miocene Atlantic "riverine" route; a Pliocene Beringian route; and a late-Pleistocene Atlantic route. To test these hypotheses, allozyme and mitochondrial DNA variation were compared in three Stizostedion species, S. canadense and S. vitreum from North America, and S. lucioperca from Europe, to determine their genetic relatedness. Divergence times between S. canadense and S. vitreum were estimated as 3.12 ± 1.33 million years before present (MYBP) from allozyme data and 4.06 ± 0.73 MYBP for mtDNA data, while divergence times between the North American species and S. lucioperca were 10.59 ± 2.74 MYBP and 7.86 ± 1.18 MYBP, respectively. These results are concordant with the hypothesis that colonization of North America by Stizostedion occurred during the Pliocene via Beringia.


2005 ◽  
Vol 83 (11) ◽  
pp. 1469-1475 ◽  
Author(s):  
M B O'Neill ◽  
D W Nagorsen ◽  
R J Baker

Inter- and intra-specific variations in cytochrome b (Cytb) sequence were assessed in 22 specimens of Sorex palustris Richardson, 1828 and 6 specimens of Sorex bendirii (Merriam, 1884) from 20 locations in western North America. Phylogenetic analyses revealed three distinct clades: Boreal (S. p. palustris), Cordilleran (S. p. brooksi, S. p. navigator), and Coastal (S. b. palmeri, S. b. bendirii). Sequence divergence between the Boreal and the Coastal–Cordilleran lineages was 6.9%, while the divergence between the Coastal and the Cordilleran clades was 3.1%. Sorex palustris brooksi, a subspecies endemic to Vancouver Island, showed minor divergence from mainland samples of S. p. navigator. The results suggest that S. palustris may consist of two species: a boreal eastern form (S. palustris) and a Cordilleran form (S. navigator). The taxonomic validity of S. p. brooksi is unresolved. Distribution of the three clades are consistent with vicariance and isolation in coastal, Cordilleran, and eastern refugia in the Late Pliocene or Pleistocene. The Vancouver Island subspecies S. p. brooksi is probably derived from postglacial colonization in the Late Pleistocene.


1997 ◽  
Vol 54 (7) ◽  
pp. 1450-1460 ◽  
Author(s):  
M H Murdoch ◽  
P DN Hebert

Restriction fragment length polymorphisms were used to survey the mitochondrial genome of Ameiurus nebulosus for nucleotide sequence variation. Two hundred and forty-nine individuals were analyzed from 12 populations across the Great Lakes drainage and 3 populations in possible refugial drainages. Fifteen restriction endonucleases revealed 50 distinct haplotypes among these fish. Two major phylogenetic assemblages, A and B, were revealed with an average 3.22% sequence divergence. Both assemblages were themselves fragmented into two groups. Strong geographic patterning was observed in the frequency of assemblages and groups across the sampling area: assemblage A was predominant in fish from populations east of Lake Erie, while western populations were dominated by assemblage B. The distribution and phylogenetic divergence of mitochondrial haplotypes indicate that brown bullhead in the Great Lakes originated from two Pleistocene refugia and further provides genetic evidence of subdivision within these refugia. Pleistocene glaciations appear to have had a similar influence on the geographic distribution of mitochondrial DNA lineages of other North American fishes. In contrast with these other species, however, much of the mitochondrial DNA variation and divergence was retained in brown bullhead populations living south of the ice sheets and is represented in extant populations.


2014 ◽  
Vol 281 (1792) ◽  
pp. 20141093 ◽  
Author(s):  
Gonçalo Silva ◽  
Fernando P. Lima ◽  
Paulo Martel ◽  
Rita Castilho

Natural populations of widely distributed organisms often exhibit genetic clinal variation over their geographical ranges. The European anchovy, Engraulis encrasicolus , illustrates this by displaying a two-clade mitochondrial structure clinally arranged along the eastern Atlantic. One clade has low frequencies at higher latitudes, whereas the other has an anti-tropical distribution, with frequencies decreasing towards the tropics. The distribution pattern of these clades has been explained as a consequence of secondary contact after an ancient geographical isolation. However, it is not unlikely that selection acts on mitochondria whose genes are involved in relevant oxidative phosphorylation processes. In this study, we performed selection tests on a fragment of 1044 bp of the mitochondrial cytochrome b gene using 455 individuals from 18 locations. We also tested correlations of six environmental features: temperature, salinity, apparent oxygen utilization and nutrient concentrations of phosphate, nitrate and silicate, on a compilation of mitochondrial clade frequencies from 66 sampling sites comprising 2776 specimens from previously published studies. Positive selection in a single codon was detected predominantly (99%) in the anti-tropical clade and temperature was the most relevant environmental predictor, contributing with 59% of the variance in the geographical distribution of clade frequencies. These findings strongly suggest that temperature is shaping the contemporary distribution of mitochondrial DNA clade frequencies in the European anchovy.


1997 ◽  
Vol 54 (3) ◽  
pp. 555-565 ◽  
Author(s):  
P Lafontaine ◽  
J J Dodson

Restriction fragment length polymorphisms in mitochondrial DNA (mtDNA) were used to study the influence of Pleistocene glaciations on the intraspecific genetic structure and distribution of the white sucker (Catostomus commersoni) in northeastern North America. A total of 312 white sucker from 13 populations, including a population of dwarf ecotypes (Catostomus commersoni utawana), were analysed. An average of 93 fragments per individual and 40 haplotypes were generated by nine restriction endonucleases. Four discrete clades were identified but the majority of the genotypes found (70%) were not associated with any of the clades. The phylogenetic continuity and the geographic admixture of some of the few clades identified are associated with the extensive distribution of the species south of the ice sheets during Pleistocene glaciation events. Hierarchical analysis of the variability in mtDNA revealed a significant regional subdivision to the northwest and southeast of the St. Lawrence drainage system and significant structure at the population level. As the dwarf form exhibited a haplotype identical to that found among normal forms, we tentatively conclude sympatric divergence as the most likely origin of the dwarf and normal ecotypes sampled in the Adirondacks.


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