Use of line transect methods to estimate abundance of benthic stream fishes

1995 ◽  
Vol 52 (1) ◽  
pp. 213-222 ◽  
Author(s):  
William E. Ensign ◽  
Paul L. Angermeier ◽  
C. Andrew Dolloff

Visual estimation of stream salmonid abundance using strip transect sighting models has become commonplace. Application of visual estimation to other stream fishes, particularly benthic forms, has been limited. Examination of the distribution of sighting distances for the Roanoke darter (Percina roanoka), Roanoke logperch (P. rex), and black jumprock (Moxostoma cervinum) indicates that strip transect sighting models that assume probability of sighting remaining constant out to the limits of observer visibility are not appropriate for these benthic species. Our datasets indicate that distance sampling models that assume decreased sighting probability with increasing distance of the target from the observer provide a reasonable alternative to strip transect sighting models. There was a strong positive correlation between abundance estimates calculated using two alternative distance sampling models, as well as between the distance sampling model estimates and an estimate of abundance obtained with a backpack electroshocker.

2015 ◽  
Vol 42 (8) ◽  
pp. 633 ◽  
Author(s):  
Ruth Glass ◽  
David M. Forsyth ◽  
Graeme Coulson ◽  
Marco Festa-Bianchet

Context Distance sampling is widely used to estimate the size of wildlife populations, including kangaroos. However, the performance of distance-sampling abundance estimates has seldom been evaluated for wild mammal populations of known size. Aims We evaluated the precision, accuracy, bias and interval coverage of abundance estimates from walked line-transect sampling, a commonly used distance-sampling method, for a marked free-ranging population of eastern grey kangaroos (Macropus giganteus) at Yanakie Isthmus, Wilsons Promontory National Park, south-eastern Australia. Methods In each of two study periods (November 2012 and May 2013) we first determined the true size of the uniquely marked kangaroo population by conducting 10 intensive searches of the study area. We then conducted distance sampling along six systematically spaced line transects. We walked each transect four times in November 2012 and seven times in May 2013. Data were analysed using Program DISTANCE. Key results Our intensive searches revealed that 141 and 124 collared kangaroos were present in the study area in November 2012 and May 2013, respectively. When transects were walked four or more times (i.e. ≥400 observations), maximum precision (coefficient of variation; CV of ~13%) was achieved in both survey periods. Walking transects twice (i.e. ~200 observations) produced abundance estimates with CVs of <20% in each study period. The accuracy (root mean square error) of abundance estimates varied from 1 to 13 (November 2012) and from 3 to 28 (May 2013). Bias ranged from −9% to +23%, but stabilised at between −1% and −9% when transects were walked four or more times in each study period. The 95% confidence intervals for the abundance estimates always included the true population size. Conclusions Our results indicated that walked line-transect distance sampling is a precise and accurate method for estimating eastern grey kangaroo abundance. The small negative biases that occurred when sample sizes were large were likely to be due to some animals moving outside the study area. Implications Provided that the key design elements and assumptions are met, estimates of kangaroo abundance from walked line-transect distance sampling should have good precision (CV < 20%) and minimal (<10%) bias.


Author(s):  
Lora L Smith ◽  
Jennifer M. Howze ◽  
Jennifer S. Staiger ◽  
Eric R. Sievers ◽  
Deborah Burr ◽  
...  

The gopher frog Lithobates capito is one of the most terrestrial frogs in the southeastern U.S. and often inhabits gopher tortoise burrows Gopherus polyphemus outside of the breeding season. Gopher frog populations have declined, and the species is under review for listing as threatened or endangered under the U.S. Endangered Species Act. Much of our knowledge on the status of gopher frogs is based on detections of larvae at breeding wetlands, which can be challenging due to environmental variability and provides no information on the terrestrial life stages of the species. Therefore, an alternative method is called for. We recorded observations of gopher frogs during gopher tortoise surveys at four conservation lands in Florida and used line transect distance sampling to estimate frog abundance. We also recorded burrow size, incidence of frog co-occupancy with tortoises, and distance from frog-occupied burrows to breeding wetlands. We observed 274 gopher frogs in 1,097 tortoise burrows at the four sites. The proportion of burrows occupied by gopher frogs among sites ranged from 0.17 to 0.25. Gopher frog abundance in tortoise burrows was 742 (512–1,076 95% CL) at Etoniah Creek State Forest, 465 (352–615) at Ft. White Wildlife Environmental Area, 411(283–595) at Mike Roess Gold Head Branch State Park, and 134 (97–186) at Watermelon Pond Wildlife Environmental Area. We observed up to four frogs in a single burrow. The proportion of frogs detected in burrows occupied by a gopher tortoise ranged from 0.46 to 0.79 among sites, and overall, gopher frogs preferred burrows occupied by tortoises over unoccupied burrows (χ 2 = 15.875, df=3, p = 0.001). Gopher frogs used burrows from 7 to 43 cm in width; mean width of frog-occupied burrows did not differ from that of unoccupied burrows ( F 1,3 = 0.0492, p = 0.8245). Distance from frog-occupied tortoise burrows to the nearest breeding wetland ranged from 141 to 3,402 m. Our data on gopher frogs collected in conjunction with gopher tortoise monitoring efforts using line transect distance sampling and burrow cameras provided novel information on frog abundance in their terrestrial habitat and required no additional effort. However, the extent to which frogs use tortoise burrows relative to other available refuges (small mammal burrows, stumps, or other structures) is unknown, thus our estimates should be considered conservative. We suggest that terrestrial abundance estimates for gopher frogs can complement efforts to monitor breeding activity to provide a more comprehensive means of monitoring population trends in this cryptic species.


PLoS ONE ◽  
2021 ◽  
Vol 16 (5) ◽  
pp. e0252231
Author(s):  
Nathan J. Crum ◽  
Lisa C. Neyman ◽  
Timothy A. Gowan

Accurate and precise abundance estimation is vital for informed wildlife conservation and management decision-making. Line transect surveys are a common sampling approach for abundance estimation. Distance sampling is often used to estimate abundance from line transect survey data; however, search encounter spatial capture-recapture can also be used when individuals in the population of interest are identifiable. The search encounter spatial capture-recapture model has rarely been applied, and its performance has not been compared to that of distance sampling. We analyzed simulated datasets to compare the performance of distance sampling and spatial capture-recapture abundance estimators. Additionally, we estimated the abundance of North Atlantic right whales in the southeastern United States with two formulations of each model and compared the estimates. Spatial capture-recapture abundance estimates had lower root mean squared error than distance sampling estimates. Spatial capture-recapture 95% credible intervals for abundance had nominal coverage, i.e., contained the simulating value for abundance in 95% of simulations, whereas distance sampling credible intervals had below nominal coverage. Moreover, North Atlantic right whale abundance estimates from distance sampling models were more sensitive to model specification compared to spatial capture-recapture estimates. When estimating abundance from line transect data, researchers should consider using search encounter spatial capture-recapture when individuals in the population of interest are identifiable, when line transects are surveyed over multiple occasions, when there is imperfect detection of individuals located on the line transect, and when it is safe to assume the population of interest is closed demographically. When line transects are surveyed over multiple occasions, researchers should be aware that individual space use may induce spatial autocorrelation in counts across transects. This is not accounted for in common distance sampling estimators and leads to overly precise abundance estimates.


Author(s):  
Katherine C Kral-O’Brien ◽  
Adrienne K Antonsen ◽  
Torre J Hovick ◽  
Ryan F Limb ◽  
Jason P Harmon

Abstract Many methods are used to survey butterfly populations, with line transect and area surveys being prominent. Observers are typically limited to search within 5 or 10 m from the line, while observers are unrestricted in larger specified search regions in area surveys. Although methods differ slightly, the selection is often based on producing defendable data for conservation, maximizing data quality, and minimizing effort. To guide method selection, we compared butterfly surveys using 1) line versus area methods and 2) varying width transects (5 m, 10 m, or unrestricted) using count data from surveys in North Dakota from 2015 to 2018. Between line and area surveys, we detected more individuals with area surveys, even when accounting for effort. However, both methods accumulated new species at similar rates. When comparing transect methodology, we detected nearly 60% more individuals and nine more species when transect width increased from 5 m to unrestricted, despite similar effort across methodology. Overall, we found line surveys slightly less efficient at detecting individuals, but they collected similar species richness to area surveys when accounting for effort. Additionally, line surveys allow the use of unrestricted-width transects with distance sampling procedures, which were more effective at detecting species and individuals while providing a means to correct count data over the same transect length. Methods that reduce effort and accurately depict communities are especially important for conservation when long-term datasets are unavailable.


2021 ◽  
pp. 1-12
Author(s):  
FRANK F. RIVERA-MILÁN ◽  
HANNAH MADDEN ◽  
KEVIN VERDEL

Summary Structural vegetation damage and food limitation are important effects of major hurricanes, particularly for fruit/seed-eating, forest-dependent Caribbean birds with restricted distributions and small populations, such as the Bridled Quail-dove Geotrygon mystacea. Motivated by the lack of abundance estimates, corrected for detection probability, we conducted distance-sampling surveys inside and outside the Quill National Park each May in 2016-2019. Detection mode was the most important covariate, with others receiving no support from the data. Detectability of available single individuals and clusters of individuals within 60 m of transect centrelines averaged 0.957 ± 0.114 standard error for audio detections, 0.434 ± 0.052 for visual detections, and 0.693 ± 0.064 for detection modes combined. Availability averaged 0.475 ± 0.138 and the product of detectability and availability averaged 0.329 ± 0.098. Density averaged 1.459 ± 0.277 individuals ha-1 and population size averaged 642 ± 122 individuals in 440 ha. Density did not differ along and away from forest trails, but was higher inside than outside the park and at elevations within 201-400 m than 100-200 m and 401-600 m. Density declined by 76% after hurricanes Irma and Maria in 2017. We suggest that major hurricanes together with free-ranging livestock overgrazing degraded foraging habitats, limited food supply, and caused a population bottleneck. Our methodology can be implemented across the distribution range to assess population status and trends and evaluate the result of management actions at key conservation sites. Bridled Quail-dove populations probably were declining on most islands before the 2017 hurricanes and population status warrants revision.


2016 ◽  
Vol 94 (7) ◽  
pp. 505-515 ◽  
Author(s):  
Thomas A. Jefferson ◽  
Mari A. Smultea ◽  
Sarah S. Courbis ◽  
Gregory S. Campbell

The harbor porpoise (Phocoena phocoena (L., 1758)) used to be common in Puget Sound, Washington, but virtually disappeared from these waters by the 1970s. We conducted systematic aerial line-transect surveys (17 237 km total effort) for harbor porpoises, with the goal of estimating density and abundance in the inland waters of Washington State. Surveys in Puget Sound occurred throughout the year from 2013 to 2015, and in the Strait of Juan de Fuca and the San Juan Islands (and some adjacent Canadian waters) in April 2015. We used a high-wing, twin-engine Partenavia airplane and four observers (one on each side of the plane, one looking through a belly port, and one recording data). A total of 1063 harbor porpoise groups were sighted. Density and abundance were estimated using conventional distance sampling methods. Analyses were limited to 447 harbor porpoise groups observed during 5708 km of effort during good sighting conditions suitable for line-transect analysis. Harbor porpoises occurred in all regions of the study area, with highest densities around the San Juan Islands and in northern Puget Sound. Overall, estimated abundance for the Washington Inland Waters stock was 11 233 porpoises (CV = 37%, 95% CI = 9 616 – 13 120). This project clearly demonstrated that harbor porpoises have reoccupied waters of Puget Sound and are present there in all seasons. However, the specific reasons for their initial decline and subsequent recovery remain uncertain.


2011 ◽  
Vol 38 (3) ◽  
pp. 221 ◽  
Author(s):  
Tom A. Porteus ◽  
Suzanne M. Richardson ◽  
Jonathan C. Reynolds

Context Sampling methods to estimate animal density require good survey design to ensure assumptions are met and sampling is representative of the survey area. Management decisions are often made based on these estimates. However, without knowledge of true population size it is not possible for wildlife biologists to evaluate how biased the estimates can be if survey design is compromised. Aims Our aims were to use distance sampling to estimate population size for domestic sheep free-ranging within large enclosed areas of hill country and, by comparing estimates against actual numbers, examine how bias and precision are impaired when survey design is compromised. Methods We used both line and point transect sampling to derive estimates of density for sheep on four farms in upland England. In Stage I we used limited effort and different transect types to compromise survey design. In Stage II we increased effort in an attempt to improve on the Stage I estimates. We also examined the influence of a walking observer on sheep behaviour to assess compliance with distance sampling assumptions and to improve the fit of models to the data. Key results Our results show that distance sampling can lead to biased and imprecise density estimates if survey design is poor, particularly when sampling high density and mobile species that respond to observer presence. In Stage I, walked line transects were least biased; point transects were most biased. Increased effort in Stage II reduced the bias in walked line transect estimates. For all estimates, the actual density was within the derived 95% confidence intervals, but some of these spanned a range of over 100 sheep per km2. Conclusions Using a population of known size, we showed that survey design is vitally important in achieving unbiased and precise density estimation using distance sampling. Adequate transect replication reduced the bias considerably within a compromised survey design. Implications Management decisions based on poorly designed surveys must be made with an appropriate understanding of estimate uncertainty. Failure to do this may lead to ineffective management.


2008 ◽  
Vol 35 (4) ◽  
pp. 275 ◽  
Author(s):  
Rachel M. Fewster ◽  
Colin Southwell ◽  
David L. Borchers ◽  
Stephen T. Buckland ◽  
Anthony R. Pople

Line-transect distance sampling is a widely used method for estimating animal density from aerial surveys. Analysis of line-transect distance data usually relies on a requirement that the statistical distribution of distances of animal groups from the transect line is uniform. We show that this requirement is satisfied by the survey design if all other assumptions of distance sampling hold, but it can be violated by consistent survey problems such as responsive movement of the animals towards or away from the observer. We hypothesise that problems with the uniform requirement are unlikely to be encountered for immobile taxa, but might become substantial for species of high mobility. We test evidence for non-uniformity using double-observer distance data from two aerial surveys of five species with a spectrum of mobility capabilities and tendencies. No clear evidence against uniformity was found for crabeater seals or emperor penguins on the pack-ice in East Antarctica, while minor non-uniformity consistent with responsive movement up to 30 m was found for Adelie penguins. Strong evidence of either non-uniformity or a failure of the capture–recapture validating method was found for eastern grey kangaroos and red kangaroos in Queensland.


Oryx ◽  
2013 ◽  
Vol 47 (2) ◽  
pp. 266-272 ◽  
Author(s):  
Mahmoud-Reza Hemami ◽  
Moslem Momeni

AbstractHistorically, the onager or Persian wild ass Equus hemionus onager, endemic to Iran, was widespread on the arid and semi-arid central steppes but only two natural populations remain. We estimated the population density of the onager in Qatruiyeh National Park using line transect distance sampling. Transects were surveyed on three plains in the Park and the results compared with total counts conducted by the Department of Environment. Our estimate (109 onagers per 100 km2; 95% confidence interval 67–179) is similar to that obtained by the total counts (137 onagers per 100 km2). Distance sampling is therefore a promising method for estimating the abundance of the onager. Using the annual censuses performed by the Department of Environment over the last 13 years we estimated that the population has a growth rate of 0.09. During the same period the onager population in the Touran Protected Complex has experienced a severe decline. The high density of onagers within the National Park indicates the unsuitability of adjacent habitats, including Bahram-e-Goor Protected Area, for this species. Lack of sufficient security and poorly distributed water sources appear to be the main reasons discouraging onagers from entering the Bahram-e-Goor Protected Area. We recommend and describe management interventions that could potentially assist in maintaining the last surviving onager populations in Iran.


Oryx ◽  
2012 ◽  
Vol 46 (3) ◽  
pp. 457-463 ◽  
Author(s):  
Ryan C. J. Walker ◽  
Tsilavo H. Rafeliarisoa

AbstractThe Madagascar spider tortoise Pyxis arachnoides is endemic to the coastal dry forests of south-west Madagascar. In recent years its range has been reduced by c. 71%, with the species now confined to eight fragmented populations occupying a total of 2,464 km2. These remaining populations are facing a significant threat of extinction because of habitat destruction and other anthropogenic pressures. We developed methodology for a line transect distance sampling survey and applied it systematically across the species' range. The resulting distance model estimated a mean density of 226.9 tortoises km−2 (95% confidence interval, CI, 168.1–306.3) and a total population of 664,980 (95% CI 492,680–897,550). Fragmentation of the species’ range suggests the current population could be <30% of the historical population. Of the remaining population 73.5% falls within protected areas. However, nine of these 12 protected areas are designated as IUCN category III, V or VI parks, allowing some extractive activities to be undertaken. The most effective strategy for the conservation of P. arachnoides would be to reduce the threats to this species and its habitat, and to develop and expand the current community-based conservation and poverty alleviation programmes in the region.


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