Genetic variation and conservation of stream fishes: influence of ecology, life history, and water quality

1997 ◽  
Vol 54 (8) ◽  
pp. 1822-1836 ◽  
Author(s):  
M R Heithaus ◽  
R H Laushman
Keyword(s):  
Water Quality ◽  
Genetic Variation ◽  
Life History ◽  
Genetic Erosion ◽  
Population Variation ◽  
Pollution Tolerance ◽  
Niche Variation ◽  
Niche Variation Hypothesis ◽  
Etheostoma Blennioides ◽  
Etheostoma Caeruleum

Three stream-dwelling fish species were used to investigate effects of ecology, life history, and water quality on genetic variation. We sampled Etheostoma caeruleum, E. blennioides, and Campostoma anomalum from six streams of varying water quality. Allozyme electrophoresis revealed that the most ecologically specialized species, E. caeruleum, was the least variable (P = 68.4%, Hobs = 1.2%). Etheostoma blennioides was intermediate in specialization and variation (P = 77.8%, Hobs = 7.8%), and the least specialized species, C. anomalum, had the most variation (P = 90.0%, Hobs = 12.1%). This pattern conforms to Willis' niche-variation hypothesis and Selander and Kaufman's adaptation model. Differences in ecology, life history, and amount of genetic variation are responsible for differences in how variation is apportioned within and among populations and within and among rivers. Populations in the river with the worst water quality (Huron River) had the lowest within-population variation for each species; therefore, genetic variation may be a useful indicator of water quality. Lower genetic variation may result from selection associated with specific loci, e.g., PGM-2, in stoneroller minnows. However, indirect effects on population size probably contributed to the erosion of genetic variation. Ecology, life history, and pollution tolerance data combine as predictors of species' risk of genetic erosion.

Genetic variation in marine fishes as a test of the niche-variation hypothesis

Nature ◽  
1974 ◽  
Vol 249 (5458) ◽  
pp. 670-672 ◽  
Author(s):  
GEORGE N. SOMERO ◽  
MICHAEL SOULÉ
Keyword(s):  
Genetic Variation ◽  
Marine Fishes ◽  
Niche Variation ◽  
Niche Variation Hypothesis

scholarly journals Genetic Diversity of Landraces and Improved Varieties of Rice (Oryza sativa L.) in Taiwan

Rice ◽  
2020 ◽  
Vol 13 (1) ◽  
Author(s):  
Ai-ling Hour ◽  
Wei-hsun Hsieh ◽  
Su-huang Chang ◽  
Yong-pei Wu ◽  
Han-shiuan Chin ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Genetic Variation ◽  
Indigenous Peoples ◽  
Oryza Sativa L ◽  
Crop Improvement ◽  
Genetic Erosion ◽  
Germplasm Conservation ◽  
Gene Pools ◽  
Improved Varieties ◽  
Breeding Goals

Abstract Background Rice, the most important crop in Asia, has been cultivated in Taiwan for more than 5000 years. The landraces preserved by indigenous peoples and brought by immigrants from China hundreds of years ago exhibit large variation in morphology, implying that they comprise rich genetic resources. Breeding goals according to the preferences of farmers, consumers and government policies also alter gene pools and genetic diversity of improved varieties. To unveil how genetic diversity is affected by natural, farmers’, and breeders’ selections is crucial for germplasm conservation and crop improvement. Results A diversity panel of 148 rice accessions, including 47 cultivars and 59 landraces from Taiwan and 42 accessions from other countries, were genotyped by using 75 molecular markers that revealed an average of 12.7 alleles per locus with mean polymorphism information content of 0.72. These accessions could be grouped into five subpopulations corresponding to wild rice, japonica landraces, indica landraces, indica cultivars, and japonica cultivars. The genetic diversity within subpopulations was: wild rices > landraces > cultivars; and indica rice > japonica rice. Despite having less variation among cultivars, japonica landraces had greater genetic variation than indica landraces because the majority of Taiwanese japonica landraces preserved by indigenous peoples were classified as tropical japonica. Two major clusters of indica landraces were formed by phylogenetic analysis, in accordance with immigration from two origins. Genetic erosion had occurred in later japonica varieties due to a narrow selection of germplasm being incorporated into breeding programs for premium grain quality. Genetic differentiation between early and late cultivars was significant in japonica (FST = 0.3751) but not in indica (FST = 0.0045), indicating effects of different breeding goals on modern germplasm. Indigenous landraces with unique intermediate and admixed genetic backgrounds were untapped, representing valuable resources for rice breeding. Conclusions The genetic diversity of improved rice varieties has been substantially shaped by breeding goals, leading to differentiation between indica and japonica cultivars. Taiwanese landraces with different origins possess various and unique genetic backgrounds. Taiwanese rice germplasm provides diverse genetic variation for association mapping to unveil useful genes and is a precious genetic reservoir for rice improvement.

Evidence for multiple paternity in two species of Orconectes crayfish

2014 ◽  
Vol 92 (11) ◽  
pp. 985-988 ◽  
Author(s):  
A.F. Kahrl ◽  
R.H. Laushman ◽  
A.J. Roles
Keyword(s):  
Genetic Variation ◽  
Life History ◽  
Multiple Mating ◽  
Natural Populations ◽  
Multiple Paternity ◽  
The Body ◽  
Freshwater Crayfish ◽  
Decapod Crustaceans ◽  
Freshwater Habitats ◽  
Crayfish Species

Multiple mating is expected to be common in organisms that produce large clutches as a mechanism by which sexual reproduction can enrich genetic variation. For freshwater crayfish, observation of multiple mating suggests the potential for high rates of multiple paternity, but genetic confirmation is largely lacking from natural populations. We studied paternity within wild-caught broods of two crayfish species in the genus Orconectes (Sanborn’s crayfish (Orconectes sanbornii (Faxon, 1884)) and the Allegheny crayfish (Orconectes obscurus (Hagen, 1870))). Although females have been observed mating with multiple males, this is the first genetic confirmation of multiple paternity in broods of these two species. Berried females were collected in the field and maintained in aquaria until their eggs hatched. We amplified and genotyped extracted DNA from maternal and hatchling tissue for several microsatellite loci. For both species, paternity reconstruction (GERUD 2.0) yielded 2–3 sires per brood and no single paternity clutches. We discuss these results from natural populations in light of the body of work on reproductive ecology of decapod crustaceans and in the context of changes in life history following the transition from marine to freshwater habitats.

scholarly journals Loci, genes, and gene networks associated with life history variation in a model ecological organism,Daphnia pulex(complex)

2018 ◽  
Author(s):  
Jacob W. Malcom ◽  
Thomas E. Juenger ◽  
Mathew A. Leibold
Keyword(s):  
Gene Expression ◽  
Genetic Variation ◽  
Life History ◽  
Molecular Basis ◽  
Life History Traits ◽  
Evolutionary Dynamics ◽  
Daphnia Pulex ◽  
Life History Trait ◽  
Life History Variation ◽  
Trait Variation

ABSTRACTBackgroundIdentifying the molecular basis of heritable variation provides insight into the underlying mechanisms generating phenotypic variation and the evolutionary history of organismal traits. Life history trait variation is of central importance to ecological and evolutionary dynamics, and contemporary genomic tools permit studies of the basis of this variation in non-genetic model organisms. We used high density genotyping, RNA-Seq gene expression assays, and detailed phenotyping of fourteen ecologically important life history traits in a wild-caught panel of 32Daphnia pulexclones to explore the molecular basis of trait variation in a model ecological species.ResultsWe found extensive phenotypic and a range of heritable genetic variation (~0 < H2< 0.44) in the panel, and accordingly identify 75-261 genes—organized in 3-6 coexpression modules—associated with genetic variation in each trait. The trait-related coexpression modules possess well-supported promoter motifs, and in conjunction with marker variation at trans- loci, suggest a relatively small number of important expression regulators. We further identify a candidate genetic network with SNPs in eight known transcriptional regulators, and dozens of differentially expressed genes, associated with life history variation. The gene-trait associations include numerous un-annotated genes, but also support several a priori hypotheses, including an ecdysone-induced protein and several Gene Ontology pathways.ConclusionThe genetic and gene expression architecture ofDaphnialife history traits is complex, and our results provide numerous candidate loci, genes, and coexpression modules to be tested as the molecular mechanisms that underlieDaphniaeco-evolutionary dynamics.

Life history trade-offs at a single locus maintain sexually selected genetic variation

Nature ◽  
2013 ◽  
Vol 502 (7469) ◽  
pp. 93-95 ◽  
Author(s):  
Susan E. Johnston ◽  
Jacob Gratten ◽  
Camillo Berenos ◽  
Jill G. Pilkington ◽  
Tim H. Clutton-Brock ◽  
...  
Keyword(s):  
Genetic Variation ◽  
Life History ◽  
Single Locus ◽  
Trade Offs

scholarly journals Genetic Variation for Life History Sensitivity to Seasonal Warming in Arabidopsis thaliana

Genetics ◽  
2013 ◽  
Vol 196 (2) ◽  
pp. 569-577 ◽  
Author(s):  
Yan Li ◽  
Riyan Cheng ◽  
Kurt A. Spokas ◽  
Abraham A. Palmer ◽  
Justin O. Borevitz
Keyword(s):  
Arabidopsis Thaliana ◽  
Genetic Variation ◽  
Life History

Population-Based Cytogenetic Banding Analysis and Phylogenetic Relationships of the Neotropical Fungus-Farming Ant Trachymyrmex holmgreni Wheeler, 1925

2019 ◽  
Vol 159 (3) ◽  
pp. 151-161 ◽  
Author(s):  
Ricardo Micolino ◽  
Maykon P. Cristiano ◽  
Danon C. Cardoso
Keyword(s):  
Genetic Variation ◽  
Phylogenetic Reconstruction ◽  
Population Based ◽  
Population Variation ◽  
Incipient Speciation ◽  
Telomeric Sequences ◽  
New Information ◽  
Banding Analysis ◽  
Pattern Characteristic ◽  
Northern Brazil

Trachymyrmex is one of the most species-rich genera within fungus-farming ants and presents intraspecific cytogenetic polymorphisms as well as possible cryptic species. This ant genus is currently paraphyletic. Therefore, to unravel systematic and taxonomic misunderstandings, it is necessary to incorporate new information. We aimed to cytogenetically and genetically examine Trachymyrmex holmgreni populations from southern and northern Brazil to identify intraspecific chromosomal variations that support incipient speciation and reveal the species' position in a molecular phylogeny. Our cytogenetic approach did not show population variation in the mapping of both 18S rDNA and the TTAGG(6) motif, presenting instead a pattern characteristic of correlated species. However, the clustered pattern of the microsatellite GA(15) showed significant differences among populations: a well-defined block in each homologue, distinctly irregular signs between homologues, and blocks in 2 pairs of homologues. Our phylogenetic reconstruction yielded unexpected results, grouping representatives of 3 former morphological groups into 1 clade, namely T. urichii, T. papulatus, and T. holmgreni. Previously, it was suggested that northern and southern populations of T. holmgreni may be undergoing incipient speciation, but we can only indicate that the southernmost population differs prominently from the others in its distribution pattern of the microsatellite GA(15). Our study also supports the uniformity of karyotypes and repetitive DNA from both telomeric sequences and ribosomal DNA in Trachymyrmex studied here. In addition, we clarify some phylogenetic uncertainties within the genus and suggest further relevant systematic changes. Finally, additional studies utilizing other probes and additional populations may allow the detection of hidden genetic variation.

Genetic diversity and differentiation in populations of invasive Eurasian (Myriophyllum spicatum) and hybrid (Myriophyllum spicatum × Myriophyllum sibiricum) watermilfoil

2020 ◽  
Vol 13 (2) ◽  
pp. 59-67
Author(s):  
Ryan A. Thum ◽  
Gregory M. Chorak ◽  
Raymond M. Newman ◽  
Jasmine A. Eltawely ◽  
Jo Latimore ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Genetic Variation ◽  
Population Genetic ◽  
Myriophyllum Spicatum ◽  
Population Variation ◽  
Efficacy Evaluation ◽  
Submerged Aquatic Plant ◽  
Myriophyllum Sibiricum ◽  
Control Response ◽  
Herbicide Response

AbstractPopulation genetic studies of within- and among-population genetic variability are still lacking for managed submerged aquatic plant species, and such studies could provide important information for managers. For example, the extent of within-population genetic variation may influence the potential for managed populations to locally adapt to environmental conditions and control tactics. Similarly, among-population variation may influence whether specific control tactics work equally effectively in different locations. In the case of invasive Eurasian watermilfoil (Myriophyllum spicatum L.), including interspecific hybrids with native northern watermilfoil (Myriophyllum sibiricum Kom.), managers recognize that there is genetic variation for growth and herbicide response. However, it is unclear how much overall genetic variation there is, and how it is structured within and among populations. Here, we studied patterns of within- and among-lake genetic variation in 41 lakes in Michigan and 62 lakes in Minnesota using microsatellite markers. We found that within-lake genetic diversity was generally low, and among-lake genetic diversity was relatively high. However, some lakes were genetically diverse, and some genotypes were shared across multiple lakes. For genetically diverse lakes, managers should explicitly recognize the potential for genotypes to differ in control response and should account for this in monitoring and efficacy evaluation and using pretreatment herbicide screens to predict efficacy. Similarly, managers should consider differences in genetic composition among lakes as a source of variation in the growth and herbicide response of lakes with similar control tactics. Finally, laboratory or field information on control efficacy from one lake may be applied to other lakes where genotypes are shared among lakes.

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