A performance comparison between the CEP effective core potential/triple-split basis set approach and an all-electron computational method with emphasis on small Ti and V alkoxide complexes

2000 ◽  
Vol 78 (2) ◽  
pp. 206-211 ◽  
Author(s):  
Gustavo Larsen
Keyword(s):  
Density Functional ◽  
Dipole Moments ◽  
Single Point ◽  
Performance Comparison ◽  
Computational Method ◽  
Basis Set ◽  
Effective Core Potential ◽  
Core Potential ◽  
Hartree Fock ◽  
Infrared Frequencies

The structures of 30 neutral and positively charged small clusters were optimized and a number of hypothetical reaction pathways were investigated to compare the performance of the B3LYP/CEP-121G(d) Effective Core Potential/triple-split basis set method (ECP, method 1) and the B3LYP/6-311G(d) approach (method 2) for geometry optimizations. In addition, single point calculations at the B3LYP/CEP-121+G(d,p) (on geometries optimized by method 1) and at the B3LYP/6-311+G(d,p) (on optimized structures from methods 1 and 2) levels were also carried out. The augmented CEP-121G scheme is roughly 1.4 to 2.0 times computationally cheaper than full electron calculations, and is able to reproduce structures, infrared frequencies, thermochemical parameters and dipole moments predicted by the all-electron basis set employed in this study. From a practical viewpoint, the results confirm that ECPs can be used in combination with density functional methods, despite the fact that the former are typically generated via a Hartree-Fock approach.Key words: CEP, Effective Core Potentials, alkoxides, DFT, Ti.

Ab initio MO Optimizations of Osmiumtetracarbonyldihydride and Metallacyclophanes with two Osmium Atoms and their Molecular Complexes with Different Guests

1998 ◽  
Vol 53 (10) ◽  
pp. 1223-1235
Author(s):  
Inge Warttmann ◽  
Günter Häfelinger
Keyword(s):  
Ab Initio ◽  
Density Functional ◽  
Cyano Group ◽  
Single Point ◽  
Molecular Complexes ◽  
Basis Set ◽  
Basis Sets ◽  
Basis Set Superposition Error ◽  
Hartree Fock ◽  
Surprising Effect

AbstractAb initio Hartree-Fock (HF) and density functional (DFT) optimizations on the test m olecule osmiumtetracarbonyldihydride (13) with various basis sets show that the lanl2mb pseudopotential basis set for osmium leads in the HF approximation to more reliable molecular geometries than the DFT calculations. This HF procedure was used for the optimizations of molecular geometries of three isomeric 4,4,4,4,17,17,17,17-octacarbonyl-4,17-diosma[7.7]ortho-, meta- and paracyclophanes 1 to 3, of which 3 was found to be predestined for formation of various host-guest complexes with possible guests benzene (4), fluorobenzene (5), 1,3,5- trifluorobenzene (6), 1,2,4,5-tetrafluorobenzene (7), hexafluorobenzene (8), fluoroanil (9), tetrafluoroethene (10), tetracyanoethene (11) and aniline (12). Results of optimized hostguest geometries are presented graphically for inclusions and associations of guest 4 to 12 with 3. Calculated lanl2mb interaction energies, after correction for basis set superposition error (BSSE), remain favourable only for inclusion of 5 and associations of 5, 10, 11 and 12. Additionally lanl2dz single point calculations for inclusion, which may not need BSSE correction because of the improved basis set, are favourable for 6 and 12. According to lanl2mb HOMO and LUMO energies, 3 may as well easily donate or accept electrons. This may be an interpretation to the surprising effect, that Mulliken total charges are positive on the electron accepting guest molecules 4 to 11. There are geometrical peculiarities in the optimized host-guest complexes for inclusion and association. Fluorine atoms of 5 to 10 and nitrogen atoms of a cyano group of 11 and the amino group of 12 like to come close to one or two carbonyl groups. Similar distances of 2.70 Å to 3.57 Å between the O atom of the carbonyl group and the F atom or N atom appear in all optimizations of inclusion and association of 5 to 12 except in the case of association of tetrafluoroethene (10).

scholarly journals Optical Properties of Silver-Mediated DNA from Molecular Dynamics and Time Dependent Density Functional Theory

2018 ◽  
Vol 19 (8) ◽  
pp. 2346 ◽  
Author(s):  
Esko Makkonen ◽  
Patrick Rinke ◽  
Olga Lopez-Acevedo ◽  
Xi Chen
Keyword(s):  
Molecular Dynamics ◽  
Density Functional ◽  
Time Dependent ◽  
Basis Set ◽  
Dna Nanostructures ◽  
Exchange Correlation ◽  
Hartree Fock ◽  
Spurious Peak ◽  
20 Nm ◽  
Dependent Density

We report a combined quantum mechanics/molecular mechanics (QM/MM) molecular dynamics and time-dependent density functional (TDDFT) study of metal-mediated deoxyribonucleic acid (M-DNA) nanostructures. For the Ag + -mediated guanine tetramer, we found the maug-cc-pvdz basis set to be sufficient for calculating electronic circular dichroism (ECD) spectra. Our calculations further show that the B3LYP, CAM-B3LYP, B3LYP*, and PBE exchange-correlation functionals are all able to predict negative peaks in the measured ECD spectra within a 20 nm range. However, a spurious positive peak is present in the CAM-B3LYP ECD spectra. We trace the origins of this spurious peak and find that is likely due to the sensitivity of silver atoms to the amount of Hartree–Fock exchange in the exchange-correlation functional. Our presented approach provides guidance for future computational investigations of other Ag + -mediated DNA species.

An Ultimate Investigation on the Adsorption of Amantadine on Pristine and Decorated Fullerenes C59X (X=Si, Ge, B, Al, Ga, N, P, and As): A DFT, NBO, and QTAIM Study

2020 ◽  
pp. 1-17
Author(s):  
Mohsen Doust Mohammadi ◽  
Idris H. Salih ◽  
Hewa Y. Abdullah
Keyword(s):  
Electronic Properties ◽  
Intermolecular Interactions ◽  
Density Functional ◽  
Physical Adsorption ◽  
Single Point ◽  
Basis Set ◽  
Total Density ◽  
Electron Configuration ◽  
Doped Fullerenes ◽  
Donor Acceptor

In this investigation, the feasibility of detecting the amantadine (AMD) molecule onto the outer surface of pristine fullerene (C[Formula: see text]), as well as C[Formula: see text]X ([Formula: see text], Ge, B, Al, Ga, N, P, and As) decorated structures, was carefully evaluated. For achieving this goal, a density functional theory level of study using the HSEH1PBE functional together with a 6-311G(d) basis set has been used. Subsequently, the B3LYP-D3, wB97XD and M062X functionals with a 6-311G(d) basis set were also employed to consider the single point energies. Natural bond orbital (NBO) and the quantum theory of atoms in molecules (QTAIM) were implemented using the B3LYP-D3/6-311G(d) method and the results were compatible with the electronic properties. In this regard, the total density of states (TDOSs), the Wiberg bond index (WBI), natural charge, natural electron configuration, donor–acceptor NBO interactions, and the second-order perturbation energies are performed to explore the nature of the intermolecular interactions. All of the energy calculations and population analyses denote that by adsorbing of the AMD molecule onto the surface of the considered nanostructures, the intermolecular interactions are of the type of strong physical adsorption. Among the doped fullerenes, Ge-doped structure has very high adsorption energy compared to other elements. Generally, it was revealed that the sensitivity of the adsorption will be increased when the AMD molecule interacts with the decorated fullerenes and decrease the HOMO–LUMO band gap; therefore, the change of electronic properties can be used to design suitable nanocarrier.

The Electron Affinities of the Alkyldithio Radicals and their Anions

2012 ◽  
Vol 512-515 ◽  
pp. 2059-2063 ◽  
Author(s):  
Hui Yi Pei ◽  
Ai Fang Gao
Keyword(s):  
Electron Affinity ◽  
Density Functional ◽  
Basis Set ◽  
Electron Affinities ◽  
Hartree Fock ◽  
Functional Methods ◽  
Different Types ◽  
Vertical Detachment Energy ◽  
Vertical Electron Affinity ◽  
P Type

The electron affinities of the CnH2n+1SS/CnH2n+1SS- (n=1-5) species have been determined using four different density functional or hybrid Hartree-Fock density functional methods. The basis set used in this work is of double- plus polarization quality with additional diffuse s- and p-type functions, denoted DZP++. Three different types of the neutral-anion energy separations reported in this work are the adiabatic electron affinity (EAad), the vertical electron affinity (EAvert), and the vertical detachment energy (VDE). The most reliable adiabatic electron affinities, obtained at the DZP++ BP86 level of theory, are 1.794 eV (for CH3SS), 1.777 eV (for C2H5SS), 1.778 eV (a) and 1.809 eV (b) for the two isomers of C3H7SS, 1.782 eV (a), 1.825 eV (b) and 1.778 eV (c) for the three isomers of C4H9SS, and 1.784 eV (a), 1.875 eV (b), 1.805 eV (c) and 1.835 eV (d) for the three isomers of C5H11SS, respectively.

Accuracy Assessment of the ROHF-CCSD(T) Calculationsof Dipole Moments of Small Radicals

1998 ◽  
Vol 63 (9) ◽  
pp. 1409-1430 ◽  
Author(s):  
Miroslav Urban ◽  
Pavel Neogrády ◽  
Juraj Raab ◽  
Geerd H. F. Diercksen
Keyword(s):  
Large Deviation ◽  
Theoretical Calculations ◽  
Dipole Moments ◽  
Accuracy Assessment ◽  
Open Shell ◽  
Basis Set ◽  
Coupled Cluster ◽  
Hartree Fock ◽  
Experimental Values

Dipole moments of a series of radicals, OH, NO, NS, SF, SO, PO, ClO, CN, LiO, NO2, and ClO2 were calculated by the Coupled Cluster CCSD(T) method with the single determinant restricted open shell Hartree-Fock (ROHF) reference. For all molecules theoretical dipole moments were carefully compared to experimental values. The size and the quality of the basis set were systematically improved. Spin adaptation in the ROHF-CCSD(T) method, largest single and double excitation amplitudes and the T1 diagnostics were considered as indicators in the quality assessment of calculated dipole moments. For most molecules the accuracy within 0.01-0.03 D was readily obtained. For ClO and CN the spin adaptation was necessary - its contribution was as large as 0.03-0.045 D. Large deviation from experiment is observed for OH in its A2Σ+ excited state (0.135 D) and especially for LiO in its 2Π ground state (0.22 D). No indication of the failure of theoretical calculations was found which leads to the conclusion that, even if there is still a space for the improvement of theoretical calculations, experimental values should be reconsidered.

Electronic Structure, Nonlinear Optical Properties, and Vibrational Analysis of Ethyl benzoate by Density Functional Theory

2015 ◽  
Vol 5 (1) ◽  
Author(s):  
Tanveer Hasan ◽  
P. K. Singh
Keyword(s):  
Density Functional Theory ◽  
Density Functional ◽  
Vibrational Analysis ◽  
Ethyl Benzoate ◽  
Computational Method ◽  
Basis Set ◽  
Vibrational Modes ◽  
Normal Coordinate ◽  
Functional Theory ◽  
Vibrational Bands

This work deals with the vibrational spectroscopy of Ethyl benzoate (C9H10O2). The fundamental vibrational frequencies and intensity of vibrational bands were evaluated using density functional theory (DFT) using standard HF/6-31G(d,p) and B3LYP/6-31G(d,p) methods and basis set combinations. The vibrational spectra were interpreted, with the aid of normal coordinate analysis based on a scaled quantum mechanical force field. The infrared and Raman spectra were also predicted from the calculated intensities. Comparison of simulated spectra with the experimental spectra provides important information about the ability of the computational method to describe the vibrational modes.

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