Abstract C235: An investigation of the p53 ubiquitin-proteasome system using a novel non-steady-state enzyme kinetic model.

Author(s):  
Prem M. Talwai
1989 ◽  
Vol 44 (5-6) ◽  
pp. 473-479 ◽  
Author(s):  
Georg Heinen ◽  
Heinrich Strotmann

Abstract Rates of photophosphorylation were measured at constant saturating phosphate concentration , varying ADP concentration , and varying light intensity. As the transmembrane proton gradient is decreased by phosphorylation to different extents depending on the concentration of ADP . rates of ATP formation obtained at the different ADP concentrations were plotted versus the actual steady state ΔpH (in the absence of ΔΨ) during the course of the reaction . ΔpH was monitored by the calibrated 9-aminoacridine fluorescence technique. In secondary plots phosphorylation as function of ADP concentration at different constant ΔpH values were obtained . The results indicate Michaelis-Menten kinetics. The true Km for ADP is virtually unaffected by ΔpH whereas Vmax (at ADP saturation ) strongly depends on ΔpH . The results are discussed in the framework of a simple enzyme kinetic model which considers the intrathylakoidal proton (at constant external pH ) as a third substrate for ATP formation. The model is capable o f explaining the reported results as well as a variety of important results from the literature.


2005 ◽  
Vol 41 ◽  
pp. 173-186 ◽  
Author(s):  
Didier Attaix ◽  
Sophie Ventadour ◽  
Audrey Codran ◽  
Daniel Béchet ◽  
Daniel Taillandier ◽  
...  

The ubiquitin–proteasome system (UPS) is believed to degrade the major contractile skeletal muscle proteins and plays a major role in muscle wasting. Different and multiple events in the ubiquitination, deubiquitination and proteolytic machineries are responsible for the activation of the system and subsequent muscle wasting. However, other proteolytic enzymes act upstream (possibly m-calpain, cathepsin L, and/or caspase 3) and downstream (tripeptidyl-peptidase II and aminopeptidases) of the UPS, for the complete breakdown of the myofibrillar proteins into free amino acids. Recent studies have identified a few critical proteins that seem necessary for muscle wasting {i.e. the MAFbx (muscle atrophy F-box protein, also called atrogin-1) and MuRF-1 [muscle-specific RING (really interesting new gene) finger 1] ubiquitin–protein ligases}. The characterization of their signalling pathways is leading to new pharmacological approaches that can be useful to block or partially prevent muscle wasting in human patients.


2005 ◽  
Vol 41 (1) ◽  
pp. 173 ◽  
Author(s):  
Didier Attaix ◽  
Sophie Ventadour ◽  
Audrey Codran ◽  
Daniel Béchet ◽  
Daniel Taillandier ◽  
...  

2020 ◽  
Author(s):  
Jon Uranga ◽  
Lukas Hasecke ◽  
Jonny Proppe ◽  
Jan Fingerhut ◽  
Ricardo A. Mata

The 20S Proteasome is a macromolecule responsible for the chemical step in the ubiquitin-proteasome system of degrading unnecessary and unused proteins of the cell. It plays a central role both in the rapid growth of cancer cells as well as in viral infection cycles. Herein, we present a computational study of the acid-base equilibria in an active site of the human proteasome, an aspect which is often neglected despite the crucial role protons play in the catalysis. As example substrates, we take the inhibition by epoxy and boronic acid containing warheads. We have combined cluster quantum mechanical calculations, replica exchange molecular dynamics and Bayesian optimization of non-bonded potential terms in the inhibitors. In relation to the latter, we propose an easily scalable approach to the reevaluation of non-bonded potentials making use of QM/MM dynamics information. Our results show that coupled acid-base equilibria need to be considered when modeling the inhibition mechanism. The coupling between a neighboring lysine and the reacting threonine is not affected by the presence of the inhibitor.


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