Description of Ruehmaphelenchus fujiensis n. sp. (Tylenchomorpha: Aphelenchoididae) isolated from dead wood of Quercus crispula from Yamanashi, Japan

Nematology ◽  
2021 ◽  
pp. 1-18
Author(s):  
Natsumi Kanzaki
Keyword(s):  
New Species ◽  
Cryptic Species ◽  
Botrytis Cinerea ◽  
Ribosomal Rna ◽  
Dead Wood ◽  
Large Subunit ◽  
Small Subunit ◽  
Quercus Crispula ◽  
Female Tail ◽  
Molecular Phylogenetic

Summary Three undescribed Ruehmaphelenchus species were isolated from dead wood of Quercus crispula collected in three different localities in Japan. One of these three species was successfully cultured using Botrytis cinerea as its food fungus and is described and figured as R. fujiensis n. sp. The new species is characterised by the following features: male tail, conical with or without a projection; female tail, conical with variously shaped terminal mucron or projection; and male spicule possessing a relatively long and triangular condylus. The new species is close to, or almost a cryptic species of R. digitulus, i.e., the typological characters and morphometric values of these two species are mostly overlapping. In a molecular phylogenetic relationship inferred from near-full-length small subunit (18S) and D2-D3 expansion segments of the large subunit (28S) of ribosomal RNA, the new species is close to R. asiaticus, R. digitulus, R. formosanus, and Ruehmaphelenchus sp. NKZ202; however, it was clearly separated from these species.

Description of Ruehmaphelenchus formosanus n. sp. (Tylenchina: Aphelenchoididae) isolated from Euwallacea fornicates from Taiwan

Nematology ◽  
2013 ◽  
Vol 15 (8) ◽  
pp. 895-906 ◽  
Author(s):  
Natsumi Kanzaki ◽  
Hayato Masuya ◽  
Hisatomo Taki ◽  
Kimiko Okabe ◽  
Chi-Yu Chen
Keyword(s):  
New Species ◽  
Phylogenetic Tree ◽  
Ribosomal Rna ◽  
Large Subunit ◽  
Small Subunit ◽  
Ambrosia Beetle ◽  
Biodiversity Survey ◽  
Molecular Phylogenetic Tree ◽  
Molecular Phylogenetic ◽  
Males And Females

A Ruehmaphelenchus species was isolated from an ambrosia beetle, Euwallacea fornicates, during a biodiversity survey of entomophilic nematodes in Taichung, Taiwan. The new species is characterised by a unique tail morphology in both males and females, and a unique spicule morphology in males. The male spicule has clear dorsal and ventral limbs (connected by a blade-like cuticle), a triangular membrane-like structure on its sides, and short, conspicuous, laterally oriented, projections at the distal end. In a molecular phylogenetic tree, inferred from near-full-length small subunit (SSU: 18S) and D2/D3 expansion segments of the large subunit (LSU: 28S) of ribosomal RNA, the new species and other nominal and undescribed Ruehmaphelenchus species formed a well supported clade within Bursaphelenchus. Although this result supports a previous study that suggested that Ruehmaphelenchus is a junior synonym of Bursaphelenchus, the generic relationship between Ruehmaphelenchus and Bursaphelenchus remains somewhat uncertain. Therefore, R. formosanus n. sp. is described as a member of Ruehmaphelenchus, although this should be regarded as a tentative placement.

Bursaphelenchus tokyoensis n. sp. (Nematoda: Parasitaphelenchinae) isolated from dead wood of the Japanese red pine, Pinus densiflora Sieb. & Zucc., in Japan

Nematology ◽  
2009 ◽  
Vol 11 (2) ◽  
pp. 171-180 ◽  
Author(s):  
Natsumi Kanzaki ◽  
Takuya Aikawa ◽  
Robin Giblin-Davis
Keyword(s):  
New Species ◽  
Pinus Densiflora ◽  
Large Subunit ◽  
Small Subunit ◽  
Red Pine ◽  
Type Specimens ◽  
Lateral Field ◽  
Female Tail ◽  
Japanese Red Pine ◽  
Molecular Phylogenetic

AbstractBursaphelenchus tokyoensis n. sp. is described and figured from a dead Japanese red pine, Pinus densiflora. Despite several attempts, the new species was not successfully cultured and so individuals isolated from the original dead log were used as type specimens. The new species has a body length of ca 710 μm (male) and 770 μm (female), medium values of ratio a (ca 32-38 for males and ca 29-41 for females), b ratio of ca 10-12 (male) and 11-14 (female), c ratio of ca 24-29 (male) and 30-41 (female), c′ ratio of ca 2.3 (male) and ca 2.0 (female), ca 11-14 μm long stylet, four lines in the lateral field, relatively small (ca 14-16 μm), smoothly arcuate spicule lacking clear condylus, rostrum and cucullus, seven male caudal papillae and short and broad female tail with variable-shaped terminus. The new species is typologically close to B. idius but can be distinguished by male caudal papillae arrangement, female tail length and number of lateral lines. Inferred trees based upon molecular phylogenetic analysis of near full length (ca 1.6 kb) small subunit and ca 0.7 kb of the D2/D3 expansion segment of the large subunit of ribosomal DNA placed B. tokyoensis n. sp. closest to the xylophilus- and africanus-groups. However, the new species is distinguished from members of these groups by its characteristic spicule morphology and relative molecular phylogenetic placement.

Bursaphelenchus clavicauda n. sp. (Nematoda: Parasitaphelenchidae) isolated from Cryphalus sp. emerged from a dead Castanopsis cuspidata (Thunb.) Schottky var. sieboldii (Makino) Nakai in Ishigaki Island, Okinawa, Japan

Nematology ◽  
2007 ◽  
Vol 9 (6) ◽  
pp. 759-769 ◽  
Author(s):  
Hayato Masuya ◽  
Natsumi Kanzaki ◽  
Noritoshi Maehara
Keyword(s):  
New Species ◽  
Botrytis Cinerea ◽  
Dna Sequences ◽  
Large Subunit ◽  
Small Subunit ◽  
Type Specimens ◽  
Lateral Field ◽  
Castanopsis Cuspidata ◽  
Female Tail ◽  
Lateral Lines

AbstractBursaphelenchus clavicauda n. sp. is described and figured. The new species was isolated from Cryphalus sp., a species of bark beetle emerging from a dead log of Castanopsis cuspidata, and reared on Botrytis cinerea. Type specimens were collected from a 2- and 4-week-old culture on Botrytis cinerea. The new species has a body length of ca 665 μm (male) and 770 μm (female), medium (ca 30-50 for males and ca 30-45 for females) a values, b values of ca 9-13 (male) and 10-13 (female), c values of ca 20-28 (male) and 20-27 (female), c′ values of ca 2 (male) and ca 3-5 (female), ca 9-13 μm long stylet, three lines in the lateral field, relatively small (ca 14 μm) and strongly arcuate spicule with recurved and pointed condylus, seven (1 + 2 + 2 + 2) male caudal papillae and club-like female tail with rounded terminus and with or without various shapes of mucro. The new species is close to B. eremus, B. uncispicularis, B. yongensis and several other species possessing a large, recurved and pointed spicular condylus and is distinguished from these species mainly by male spicule, male caudal papillae and female tail morphologies, number of lateral lines and several morphometric values of females and males. Cultured nematodes were used for sequencing the partial (ca 1.6 kbps) small subunit, ITS regions and large subunit of ribosomal DNA for comparisons with those deposited at GenBank. The DNA sequences of the B. clavicauda n. sp. were close to those of B. eggersi, B. eremus, B. tusciae and B. yongensis.

Observations on Malenchus geraerti n. sp. (Rhabditida: Tylenchidae), a morphological and molecular phylogenetic study

Zootaxa ◽  
2018 ◽  
Vol 4369 (3) ◽  
pp. 406 ◽  
Author(s):  
MAJID PEDRAM ◽  
MAHYA SOLEYMANZADEH ◽  
EBRAHIM POURJAM ◽  
MAHYAR MOBASSERI
Keyword(s):  
New Species ◽  
Large Subunit ◽  
Small Subunit ◽  
Phylogenetic Study ◽  
Molecular Characteristics ◽  
Lsu Rdna ◽  
Northern Iran ◽  
Lateral Field ◽  
Molecular Phylogenetic ◽  
Short Body

Malenchus geraerti n. sp., recovered from natural regions of northern Iran, is described and illustrated based on morphological, morphometric and molecular data. The new species is characterized by having females with a short body, an anteriorly wide S-shaped amphidial opening narrowing posteriorly, cuticle with prominent annuli, lateral field a plain band with smooth margins, muscular metacorpus with well-developed valve and corresponding plates, spermatheca filled with small spheroid sperm cells, vulva sunken in body with large epiptygma and no flap, and conical tail tapering gradually to a more or less pointed tip. Males of the new species are characterized by having a short body, tylenchoid spicules, adcloacal bursa with smooth margin and tail similar to that of the female. Morphologically, the new species is similar to five known species of the genus: M. fusiformis, M. machadoi, M. pachycephalus, M. solovjovae and M. undulatus. It most closely resembles M. pachycephalus, but as a cryptic species it can be differentiated using morphological and molecular characteristics. Comparisons with the four other aforementioned species are also discussed. Molecular phylogenetic studies using partial sequences of small and large subunit ribosomal DNA fragments reveal that the new species forms a clade with the species M. neosulcus in the small subunit (SSU) rDNA, and two species of Lelenchus in the large subunit (LSU) rDNA tree. 

New observations on Miculenchus Andrássy, 1959 (Nematoda: Tylenchidae) with descriptions of two new and one known species from Iran

Nematology ◽  
2019 ◽  
Vol 21 (9) ◽  
pp. 937-956 ◽  
Author(s):  
Yousef Panahandeh ◽  
Ebrahim Pourjam ◽  
Sergio Álvarez-Ortega ◽  
Farahnaz Jahanshahi Afshar ◽  
Majid Pedram
Keyword(s):  
New Species ◽  
Ribosomal Rna ◽  
Large Subunit ◽  
Small Subunit ◽  
Lsu Rdna ◽  
Natural Forests ◽  
Electron Microscopic ◽  
Pharyngeal Bulb ◽  
Ribosomal Rna Gene ◽  
Molecular Approaches

Summary During nematological surveys in grasslands and natural forests of north and north-western Iran, three species of Miculenchus, including two new and one known species, were recovered and characterised based upon morphological and molecular approaches. Miculenchus brevisalvus n. sp., the first new species, is mainly characterised by its short females 334-388 μm long and with a short 6.0-7.5 μm long stylet, pyriform to pyriform-elongate pharyngeal bulb, 4-8 μm long post-uterine sac (PUS), offset rounded spermatheca filled with small spheroid sperm, elongate conoid tail 62-83 μm long with a sharp tip, and males with simple cloacal lips. Miculenchus muscus n. sp., the second new species, is characterised by a combination of the following features: body 401-467 μm long, well-developed protuberant labial plate at the anterior end under light microscopy, stylet 7-9 μm long, pyriform pharyngeal bulb, PUS 4-9 μm long, gradually narrowing conical tail 62-74 μm long with a finely pointed or sharp end and bearing several fine bristles at tip, and a male with projecting cloacal lips. Both newly described species were morphologically compared with four currently known species of the genus, viz., M. elegans, M. salmae, M. salvus, and M. tesselatus. Miculenchus salmae was also recovered and reported from Iran for the first time. It is mainly characterised by lacking a PUS and the characteristic vagina shape. Miculenchus muscus n. sp. and M. salmae were both characterised using scanning electron microscopic images, yielding new morphological observations for the genus. All three species are studied for their molecular phylogenetic characters using sequences of near-full length fragments of the small subunit ribosomal RNA gene (SSU rDNA) and the D2-D3 expansion segments of the large subunit ribosomal RNA gene (LSU rDNA D2-D3). In both SSU and LSU phylogenies, all currently sequenced species of Miculenchus formed a monophyletic group with maximal clade support in both Bayesian inference and maximum likelihood analysis.

Deladenus nitobei n. sp. (Tylenchomorpha: Allantonematidae) isolated from Sirex nitobei (Hymenoptera: Siricidae) from Aomori, Japan, a new member of the siricidicola superspecies

Nematology ◽  
2016 ◽  
Vol 18 (10) ◽  
pp. 1199-1217 ◽  
Author(s):  
Natsumi Kanzaki ◽  
Suguru E. Tanaka ◽  
Katrin Fitza ◽  
Hajime Kosaka ◽  
Bernard Slippers ◽  
...  
Keyword(s):  
New Species ◽  
Cryptic Species ◽  
Pinus Densiflora ◽  
Large Subunit ◽  
Small Subunit ◽  
Body Cavity ◽  
The Body ◽  
Malt Extract ◽  
Internal Transcribed Spacer Region ◽  
Mtcoi Gene

Deladenus nitobein. sp., a parasite of a woodwasp species,Sirex nitobei, is described based on its typological characters and molecular profiles of part of the small subunit D2-D3 expansion segments of the large subunit and internal transcribed spacer region of the ribosomal RNA gene, as well as part of the mitochondrial cytochrome oxidase subunit I (mtCOI) gene. Adult host woodwasps emerging from dead Japanese red pine logs,Pinus densiflora, collected at Aomori, Japan, were dissected and examined for nematode association. The new species was isolated from the body cavity and reproductive system ofS. nitobeias large parasitic females and small parasitic juveniles. The nematodes were cultured successfully on 1.0% malt extract agar medium, inoculated withSirex-associated fungus,Amylostereumareolatum. The mycophagous adult nematodes were characterised by the relative position of the excretory pore, located at 25 (19-28) and 25 (18-30)μm anterior to the hemizonid in the male and female, respectively, and a broad female tail with a rounded distal end. Typologically, the new species forms a cryptic species complex withD. siricidicolaandD. canii. In addition, the new species andD. siricidicolashare the same host wasp, tree and fungal species in Japan. However, the cryptic species can be separated from each other based on the described morphological and molecular sequence differences in the mtCOI gene.

scholarly journals Multi-Gene Phylogeny and Taxonomy of Hydnellum (Bankeraceae, Basidiomycota) from China

2021 ◽  
Vol 7 (10) ◽  
pp. 818
Author(s):  
Yan-Hong Mu ◽  
Jia-Rui Yu ◽  
Ting Cao ◽  
Xiang-Hua Wang ◽  
Hai-Sheng Yuan
Keyword(s):  
New Species ◽  
Rna Polymerase Ii ◽  
Ribosomal Rna ◽  
Phylogenetic Analyses ◽  
Large Subunit ◽  
Morphological Characteristics ◽  
Small Subunit ◽  
Phylogenetic Position ◽  
Ribosomal Rna Gene ◽  
Morphological Studies

The genus Hydnellum is an important group of stipitate hydnaceous fungi which can form ectomycorrhiza with many species of woody plants. In recent decades, the frequency and number of basidiocarps observed in China have been declining significantly. So far, however, we know little about the species diversity of Hydnellum in China. In this study, we conducted molecular phylogenetic analyses based on sections of multiple loci, including the large subunit of nuclear ribosomal RNA gene (nLSU), the internal transcribed spacer regions (ITS), the small subunit of nuclear ribosomal RNA gene (SSU) and the second-largest subunit of RNA polymerase II gene (RPB2), as well as morphological studies, of collected samples of Hydnellum from China. We also inferred Maximum Likelihood and Bayesian phylogenies for the order Thelephorales from the dataset of the combined nLSU and ITS. This study has revealed the phylogenetic position of Hydnellum in the order Thelephorales, and phylogenetically confirmed ten major clades in Thelephorales; Twenty-nine taxa are proposed, described or reported, including 10 new subgenera (Hydnellum subgenus Hydnellum, subg. Caesispinosum, subg. Croceum, subg. Inflatum, subg. Rhizomorphum, subg. Scabrosum, subg. Spongiosum, subg. Subindufibulatum, subg. Violaceum and subg. Zonatum), 11 new species (Hydnellum atrorubrum, H. atrospinosum, H. bomiense, H. brunneorubrum, H. fibulatum, H. granulosum, H. inflatum, H. rubidofuscum, H. squamulosum, H. sulcatum and H. yunnanense), 3 newly recorded species (H. caeruleum, H. peckii and H. spongiosipes) and 5 notable specimens (Hydnellum sp 1, H. sp 2, H. sp 3, H. sp 4 and H. sp 5). A classification system based on the morphological characteristics (especially the hyphal structure types) and molecular analyses is proposed to accommodate most species in Hydnellum. The distinguishing characters of the subgenera and the new species with their closely related taxa are discussed. A key to the species of Hydnellum from China is provided.

Devibursaphelenchus alienae n. sp. isolated from the bark of dead Quercus aliena in Japan

Nematology ◽  
2021 ◽  
pp. 1-20
Author(s):  
Natsumi Kanzaki ◽  
Keiko Hamaguchi ◽  
Yuko Takeuchi-Kaneko
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Ribosomal Rna ◽  
Large Body ◽  
Oak Wilt ◽  
Japanese Oak Wilt ◽  
Female Tail ◽  
Tail Shape ◽  
Molecular Phylogenetic ◽  
Rna Genes

Summary A new Devibursaphelenchus species isolated from the bark of a dead Quercus aliena, which had been infected and killed by Japanese oak wilt, was collected in Shiga, Japan. The new species is characterised by the relatively large body in males (661-768 μm) and females (893-1071 μm), conspicuous male bursal flap, male spicule with long condylus and wide blade, female post-vulval uterine sac (PUS) 39-54 μm or 1.6-2.3 times the vulval body diam. long, vestigial female anus, and female tail forming a strongly ventrally recurved elongate conoid with bluntly pointed or narrowly rounded terminus. The new species is typologically similar to D. lini, sharing a large body, conspicuous bursal flap, long PUS, and spicule shape, but can be distinguished from it by the absence of variation in the female tail shape, i.e., the tail of the new species is always long and strongly ventrally curved, while the tail shape varies more in D. lini. A previous molecular phylogenetic analysis suggested that the new species is fairly close to D. lini, but can be distinguished from it by the 1.0% (16 bp) difference within 1.6 kb of the 18S and 3.7% (26 bps) difference within 0.7 kb of the D2-D3 LSU ribosomal RNA genes. The newly found nematode is described and illustrated herein as D. alienae n. sp.

Description and phylogeny of Bursaphelenchus luxuriosae n. sp. (Nematoda: Aphelenchoididae) isolated from Acalolepta luxuriosa (Coleoptera: Cerambycidae)

Nematology ◽  
2003 ◽  
Vol 5 (4) ◽  
pp. 565-572 ◽  
Author(s):  
Natsumi Kanzaki ◽  
Kazuyoshi Futai
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Botrytis Cinerea ◽  
Bursaphelenchus Xylophilus ◽  
Lateral Field ◽  
Female Tail ◽  
Phylogenetic Status ◽  
Rflp Profile ◽  
Molecular Phylogenetic ◽  
Males And Females

AbstractBursaphelenchus luxuriosae n. sp. is described and figured. Specimens were collected from a 2-week-old culture on Botrytis cinerea. The new species is characterised by a body length of 897 (710-1159) μm in the female and 745 (621-887) μm in the male, relatively robust body (a = 33-39 in the female and 27-30 in the male), stylet ca 14 (11-16) μm long, four lines in the lateral field, the large (27-30 μm) arcuate spicule with a terminal cucullus, seven (2 + 1 + 2 + 2) male caudal papillae, the long, well developed vulval flap and the shape of the female tail which is long, tapered, and ventrally bent when killed by heat with an irregular or roughened dorsal contour near the tip and an irregular terminus. The new species is considered to belong to the Bursaphelenchus xylophilus group of the genus Bursaphelenchus and is most closely related to B. conicaudatus and B. fraudulentus in spicule shape, vulval flap and 'a' values of males and females. It is easily distinguished from these two species by the morphology of female tail. The RFLP profile confirms the distinctness of the new species within the B. xylophilus group. The phylogenetic status of B. luxuriosae n. sp. within the B. xylophilus group is indicated by molecular phylogenetic analysis. Bursaphelenchus luxuriosae n. sp. is assumed to be close to B. conicaudatus and to have diverged from the ancestor of the B. xylophilus group early in the speciation of the group.

Description of Ektaphelenchus berbericus n. sp. (Rhabditida: Ektaphelenchinae) from eastern Iran

Nematology ◽  
2016 ◽  
Vol 18 (9) ◽  
pp. 1063-1077 ◽  
Author(s):  
Somaye Alvani ◽  
Esmat Mahdikhani-Moghadam ◽  
Robin M. Giblin-Davis ◽  
Majid Pedram
Keyword(s):  
New Species ◽  
Ribosomal Rna ◽  
Phylogenetic Analyses ◽  
Large Subunit ◽  
Small Subunit ◽  
Slight Variation ◽  
Internal Transcribed Spacer Region ◽  
Lateral Field ◽  
Ribosomal Rna Gene ◽  
Eastern Iran

Ektaphelenchus berbericus n. sp. was recovered from soil samples collected in eastern Iran and is described and illustrated based on morphological, morphometric and molecular data. The new species is characterised by having female body 512-691 μm long, lip region separated from rest of body by a shallow depression, lips separated and equally sized, 19-22 μm long stylet with wide lumen and lacking knobs or swellings at its base, cuticle with fine, but distinct transverse annuli and three lines in lateral field, excretory pore located at base of metacorpus (with slight variation in position), reproductive system monodelphic-prodelphic with spheroid and fine sperm cells inside spermatheca in some individuals and short post-vulval uterine sac (PUS), rectum and anus vestigial (invisible in few individuals), conical posterior body end (tail), narrowing at mid-point between anus and rounded tail tip, and males lacking. The new species is typologically similar to species belonging to four genera: Devibursaphelenchus, Ektaphelenchoides, Ektaphelenchus and Seinura, by a combination of morphological characters, e.g., gross morphology of stylet (lacking knobs or swellings at base), morphology of posterior body end (having short conical tail), PUS length, and having a vestigial anus and rectum in most individuals. In molecular phylogenetic analyses using sequences of the partial small subunit of the ribosomal RNA gene (SSU) and the D2-D3 expansion segments of the large subunit (LSU) ribosomal RNA gene, the new species is close to the Ektaphelenchoides/Cryptaphelenchus clade in an inferred SSU tree, and formed a clade with Ektaphelenchoides and Devibursaphelenchus spp. in a D2-D3 LSU tree. Further phylogenetic analyses using full length sequences of the internal transcribed spacer region (ITS) (= ITS1 + 5.8S + ITS2) corroborated results from the SSU and D2-D3 LSU trees, and the multilocus analyses using the combined SSU and LSU data placed the new species in a robustly supported clade with Ektaphelenchoides poinari and Devibursaphelenchus lini.

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