Molecular and morphological phylogenetic analysis and taxonomic revision of the genus Orleanesia (Laeliinae, Epidendroideae, Orchidaceae)

Phytotaxa ◽  
2019 ◽  
Vol 392 (1) ◽  
pp. 1
Author(s):  
GABRIEL F. GONÇALVES ◽  
ANNA VICTORIA S. R. MAUAD ◽  
GIULIANA TAQUES ◽  
ERIC C. SMIDT ◽  
FÁBIO DE BARROS
Keyword(s):  
Phylogenetic Analysis ◽  
Dna Sequences ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Taxonomic Revision ◽  
Sister Group ◽  
Morphological Data ◽  
Data Sets ◽  
New Synonyms ◽  
Nuclear Its

In order to evaluate the monophyly of the genus Orleanesia (Orchidaceae) and to assess its position within Laeliinae, a phylogenetic analysis was performed using molecular (nuclear ITS and plastid matK DNA sequences) and morphological data. A taxonomic revision of Orleanesia was also performed, with a description of the genus and its species using fresh living plants and 115 exsiccates from 31 herbaria. All phylogenetic analyses were highly congruent, and thus the sequence data from all three data sets were combined. The resulting phylogeny corroborated the monophyly of Orleanesia, with two strongly supported clades, and confirmed Caularthron as its sister group. Character analysis was not very informative due to a high degree of homoplasy. Two lectotypifications and three new synonyms were proposed for the genus, thereby reducing the number of accepted species to six. Although none of the species of Orleanesia are considered endangered, it is clear that some populations are threatened with deforestation and habitat reduction.

scholarly journals Taxonomic revision and phylogenetic relationships of Dasyloricaria Isbrücker & Nijssen, 1979 (Siluriformes: Loricariidae), with description of a new species

2016 ◽  
Vol 14 (1) ◽  
Author(s):  
Alejandro Londoño-Burbano ◽  
Roberto E. Reis
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Phylogenetic Relationships ◽  
Taxonomic Revision ◽  
Sister Group ◽  
Valid Species ◽  
Maracaibo Basin ◽  
New Synonyms ◽  
Branchial Arches ◽  
A New Species

ABSTRACT A taxonomic revision and phylogenetic analysis were completed for Dasyloricaria . The genus includes three valid species: D . filamentosa and D . latiura previously included in the genus, and a new species described herein. Dasyloricaria have a restricted trans-Andean distribution, with D . filamentosa occurring at the lower and middle Magdalena, lower Cauca, and Sinu in Colombia, and lago Maracaibo basin in Colombia and Venezuela; D . latiura in the Atrato and the Tuyra basins in Colombia and Panama, respectively; and the new species in the upper and middle Magdalena basin in Colombia. New synonyms for D . filamentosa and D . latiura are proposed, and a lectotype is designated for the latter. Dasyloricaria is herein recognized as monophyletic, with D . filamentosa as the sister group of D . latiura , and the new speciesas sister to that clade. Spatuloricaria is hypothesized to be the sister group of Dasyloricaria based on synapomorphies of the neurocranium, branchial arches and external morphology features. The subtribe Rineloricariina was partially corroborated through the phylogenetic analysis. An identification key for the species of Dasyloricaria is provided.

Selected Ordovician Trilobites from the Lake St. John District of Quebec and Their Bearing on Systematics

1995 ◽  
Vol 69 (S42) ◽  
pp. 1-19 ◽  
Author(s):  
Pierre J. Lespérance ◽  
Sylvain Desbiens
Keyword(s):  
Phylogenetic Analysis ◽  
Phylogenetic Analyses ◽  
Large Data ◽  
Minimal Length ◽  
Large Data Sets ◽  
Morphological Data ◽  
Eye Position ◽  
Data Sets ◽  
Close Relationship ◽  
The Status

The thorax of Hypodicranotus has ten segments and a spine on the eighth. The ages of Erratencrinurus s.l. spicatus and Erratencrinurus (Erratencrinurus?) vigilans in the Lake St. John district do not confirm their temporal roles leading to subgenera of Erratencrinurus, as has been recently suggested. Phylogenetic analyses of large data sets of species previously referred to Encrinuroides and Physemataspis yield a minimal length cladogram containing 18 species. Encrinuroides is restricted to four species, two of which have biogeographic affinities with Iapetus. These results lead to three clades, named the Walencrinuroides n. gen. clade, Frencrinuroides n. gen. clade, and finally the Physemataspis clade, with an enlarged concept of the genus with the erection of Physemataspis (Prophysemataspis) n. subgen. These last three clades are restricted to North America and Scotland, with alternating predominance of one region. Walencrinuroides s.l. gelaisi n. gen. n. sp. is described. New morphological data on Erratencrinurus s.l. spicatus confirm its close relationship with the clades discussed above. Data are insufficient for phylogenetic analysis of selected cheirurine species here surveyed. Eye position, glabellar segmentation, and pygidial shape differentiate the genera Ceraurus and Gabriceraurus; emended diagnoses of these genera are presented. Ceraurus globulobatus and C. matranseris are distinct, but morphologically close to one another. The status of Gabriceraurus dentatus can be stabilized on its extant types.

scholarly journals Three, two, one! Revision of the long-bodied sphaerodorids (Sphaerodoridae, Annelida) and synonymization ofEphesiella,EphesiopsisandSphaerodorum

PeerJ ◽  
2018 ◽  
Vol 6 ◽  
pp. e5783 ◽  
Author(s):  
María Capa ◽  
Torkild Bakken ◽  
Karin Meißner ◽  
Arne Nygren
Keyword(s):  
Dna Sequences ◽  
Nuclear Dna ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Intraspecific Variability ◽  
Morphological Data ◽  
Nominal Species ◽  
Type Specimens ◽  
Diagnostic Features ◽  
28S Rdna Sequence

BackgroundLong-bodied sphaerodorids (Annelida, Sphaerodoridae) is the common name for members of the three closely and morphologically homogenous currently accepted genera of benthic marine bristle worms:Ephesiella,EphesiopsisandSphaerodorum. Members of this group share the presence of two dorsal and longitudinal rows of macrotubercles with terminal papillae, and two longitudinal rows of microtubercles, features that are unique among sphaerodorids. Genera are distinguished by the chaetae morphology. Members ofEphesiellaare characterised by having compound chaetae (except, sometimes, simple chaetae in the first chaetigers),Sphaerodorumbear only simple chaetae, andEphesiopsishave both compound and simple chaetae in all parapodia.MethodsMitochondrial (partial COI and 16S rDNA) and nuclear (partial 18S rDNA and 28S rDNA) sequence data of long-bodied sphaerodorids with compound and simple chaetae, and an outgroup of additional seven sphaerodorid species were analysed separately and in combination using Bayesian inference (BA), and Maximum Likelihood (ML) methods. Long-bodied sphaerodorids from around the world (including type specimens) were examined under a range of optical equipment in order to evaluate putative generic and specific diagnostic features, in addition to intraspecific variability.ResultsPhylogenetic analyses of mitochondrial and nuclear DNA sequences of specimens identified asEphesiellaandSphaerodorum,based on chaeta morphology, were performed.SphaerodorumandEphesiellawere recovered as paraphyletic and nested within each other. Revision of current nominal species diagnostic features are performed and discussed.DiscussionResults contradict current generic definitions. Recovery of paraphyletic compound and simple chaetae clades urge the synonymization of these two genera of long-bodied sphaerodorids. Morphological data also suggest the synonymization ofEphesiopsis.

Preliminary use of DNA sequences for Dohrniphora (Diptera: Phoridae) phylogeny and taxonomy JOHN M. HASH, BRIAN V. BROWN & PAUL T. SMITH (USA)

Zootaxa ◽  
2011 ◽  
Vol 2991 (1) ◽  
pp. 13
Author(s):  
JOHN M. HASH ◽  
BRIAN V. BROWN ◽  
PAUL T. SMITH
Keyword(s):  
Phylogenetic Analysis ◽  
Dna Sequences ◽  
Sequence Data ◽  
Sister Group ◽  
Sister Group Relationship ◽  
Male And Female ◽  
Dna Sequence Data ◽  
16S Gene ◽  
Monophyletic Lineage ◽  
Relationship Of

Phylogenetic analysis of DNA sequence data from the nuclear CAD (rudimentary) and mitochondrial NDI, COI, and 16S gene regions (2817 bp total) recovered exemplars of the genus Dohrniphora as a monophyletic lineage. The data also supported the sister-group relationship of Dohrniphora + Diplonevra and were used to associate a morphologically dissimilar male and female of the species D. ecitophila. Further, we discuss the implications of this designation and provide support for the synonymy of D. ecitophila and D. geminata as proposed by Borgmeier (1968).

scholarly journals Phylogeny of infraorder Sejina (Acari: Mesostigmata)

Zootaxa ◽  
2004 ◽  
Vol 629 (1) ◽  
pp. 1 ◽  
Author(s):  
MARIAM LEKVEISHVILI ◽  
HANS KLOMPEN
Keyword(s):  
Dna Sequence ◽  
Phylogenetic Relationships ◽  
Sequence Data ◽  
Sister Group ◽  
Morphological Characters ◽  
Morphological Data ◽  
Data Sets ◽  
Dna Sequence Data

Phylogenetic relationships among the families in the infraorder Sejina and the position of Sejina relative to other infraorders of Mesostigmata are re-examined based on molecular and morphological data. Data sets included DNA sequence data for complete 18S, EF-1 , partial CO1genes, and 69 morphological characters. The two families of Heterozerconina consistently group within Sejina, and we propose to synonymize Heterozerconina with Sejina (Sejina s.l). Microgyniina is not the closest relative of Sejina. Rather, Sejina s.l. most often groups with Gamasina. Uropodellidae and Ichthyostomatogasteridae are sister groups and this lineage forms the sister group to Discozerconidae plus Heterozerconidae. Overall, we recognize 5 families within Sejina: Uropodellidae, Ichthyostomatogasteridae, Sejidae, Discozerconidae, and Heterozerconidae.

Molecular phylogenetic insights into the evolution of Eriosema (Fabaceae): a recent tropical savanna-adapted genus

2020 ◽  
Vol 194 (4) ◽  
pp. 439-459
Author(s):  
Elisa Silva Cândido ◽  
Mohammad Vatanparast ◽  
Wanderleia de Vargas ◽  
Luísa M P A Bezerra ◽  
Gwilym P Lewis ◽  
...  
Keyword(s):  
Dna Sequences ◽  
Phylogenetic Analyses ◽  
Divergence Time ◽  
Data Sets ◽  
South American ◽  
Tropical Savanna ◽  
African Species ◽  
Molecular Phylogenetic ◽  
Nuclear Its ◽  
Combined Data

Abstract Eriosema comprises c. 150 species and has a pantropical distribution and two centres of diversity, Africa and America. The species occur in tropical savannas and grasslands, including the cerrado in Brazil. They have adapted to these environments by developing specialized underground organs, and an abundance of trichomes. Here we present the first comprehensive molecular phylogenetic analysis of Eriosema, including species from its entire distribution range and generating 391 new DNA sequences. We sampled 140 species from nine genera of Cajaninae, of which 94 (60% of the genus) were Eriosema. Our analyses were based on the nuclear ITS and plastid rpl32 and trnQ regions, and used maximum likelihood and Bayesian phylogenetic analyses of individual and combined data sets. In all analyses, Eriosema was resolved as monophyletic, but its interspecific relationships are not well resolved. Rhynchosia is not monophyletic, and some African Rhynchosia spp. emerged together as sister to Eriosema. Our study supports the monophyly of Adenodolichos, Dunbaria, Flemingia and Cajanus, but Chrysoscias and Bolusafra formed a clade that is sister to a group of Rhynchosia spp. Paracalyx was resolved as paraphyletic and nested among African Rhynchosia spp. Divergence time analysis suggested that the Eriosema lineages diverged 6.5–10.7 Mya. Two major lineages have diversified in Eriosema, one including most of the African species (4.41–6.68 Mya), the other mainly composed of the South American cerrado species (3.56–5.78 Mya). These results revealed that Eriosema is a recent and tropical savanna-adapted group, and its diversification occurred in the late Miocene in parallel with the expansion of C4 grasslands.

scholarly journals Revision and Phylogenetic Analysis of the Genus Phonoctonus Stål, 1853 (Heteroptera, Reduviidae, Harpactorinae)

Insects ◽  
2021 ◽  
Vol 12 (12) ◽  
pp. 1100
Author(s):  
Agnieszka Bugaj-Nawrocka ◽  
Dominik Chłond
Keyword(s):  
Phylogenetic Analysis ◽  
Phylogenetic Analyses ◽  
Taxonomic Revision ◽  
Identification Key ◽  
Morphological Data ◽  
Valid Species ◽  
Diagnostic Characters ◽  
Distribution Maps ◽  
Afrotropical Region

This paper presents a taxonomic revision and phylogenetic analysis of nine known species of the genus Phonoctonus Stål, 1853, distributed exclusively in the Afrotropical region. The revision and phylogenetic analysis were performed using morphological data. A full redescription for all species is provided, taxonomical problems are clarified, and diagnostic characters are presented and illustrated. Based on the analysis, thirteen species are recognised as valid: Phonoctonus bifasciatus stat. nov., P. caesar, P. elegans, P. fairmairei stat. nov., P. fasciatus, P. grandis, P. immitis stat. rev., P. luridus, P. lutescens, P. nigrofasciatus stat. rev., P. picta stat. nov., P. picturatus stat. rev., and P. principalis. New synonymies are proposed: Phonoctonus nigrofasciatus= P. fasciatus var. poultoni syn. nov., P. picturatus = P. fasciatus var. discalis syn. nov., and P. principalis = P. validus syn. nov. An identification key to separate the species, drawings of dorsal habitus, and distribution maps of all valid species are presented. Performed morphological phylogenetic analyses indicate monophyly of the genus Phonoctonus.

Phylogenetic relationships of the lower Cyclorrhapha (Diptera: Brachycera) based on 28S rDNA sequences

2002 ◽  
Vol 33 (4) ◽  
pp. 445-456 ◽  
Author(s):  
Brian M. Wiegmann ◽  
Kenneth P. Collins
Keyword(s):  
Phylogenetic Analysis ◽  
Phylogenetic Relationships ◽  
Phylogenetic Analyses ◽  
Sister Group ◽  
28S Rdna ◽  
Morphological Data ◽  
Monophyletic Clade ◽  
Rdna Sequences ◽  
28S Rdna Sequences

AbstractCyclorrhaphan Diptera are an extremely successful clade of ecologically and phylogenenetically important flies. Despite their significance the relationships among lower cyclorrhaphans ('Aschiza') remain controversial in spite of several morphologically based phylogenetic analyses. We sequenced a 2.7-kb fragment of 28S rDNA for taxa representing all lower cyclorrhaphan families (except Ironomyiidae), four schizophoran families, and seven empidoid out-group taxa. Phylogenetic analysis of these data strongly supports a monophyletic Cyclorrhapha (including the enigmatic taxon Opetia nigra) that is divided into two clades - a well-supported Eumuscomorpha (Syrphidae + Pipunculidae + Schizophora), and a weakly-supported Platypezoidea (all non-Eumuscomorpha). Consequently, the former grouping known as Aschiza, which included syrphids and pipunculids, is not a valid monophyletic clade. Within Platypezoidea, most of our analyses place Lonchopteridae as sister group to Opetiidae, and strongly support the monophyly of Sciadoceridae + Phoridae. Among the Eumuscomorpha we do not recover the monophyly of Syrphoidea (Syrphidae + Pipunculidae). Instead, all analyses place Pipunculidae as the sister group to Schizophora. This novel finding has never been proposed based on morphological data and will require more data (both molecular and morphological) and taxa to confirm.

Further phylogenetic studies of the Polychaeta using 18S rDNA sequence data

2004 ◽  
Vol 84 (5) ◽  
pp. 949-960 ◽  
Author(s):  
Kathryn A. Hall ◽  
Pat A. Hutchings ◽  
Donald J. Colgan
Keyword(s):  
Dna Sequences ◽  
Sequence Data ◽  
Cladistic Analysis ◽  
Sister Group ◽  
Morphological Data ◽  
Phylogenetic Studies ◽  
Rdna Sequence Data ◽  
Substantial Progress ◽  
18S Rdna Sequence

The integration of molecular and morphological approaches has produced substantial progress in understanding the higher classification of most major invertebrate groups. The striking exception to this is the Polychaeta. Neither the membership nor the higher classification of this group has been robustly established. Major inconsistencies exist between the only comprehensive cladistic analysis of Polychaeta using morphological data and the DNA sequence studies covering all or part of the taxon.We have compiled a dataset of available nearly complete 18S ribosomal DNA sequences and collected an additional 22 sequences (20 Polychaeta in 19 taxa, one Myzostomida and one Phoronida) to obtain more comprehensive coverage of polychaete diversity for this gene. Analyses of the data do not resolve all inconsistencies among current hypotheses of polychaete phylogeny. They do support the recognition (in whole or part) of some clades such as the Eunicida, Phyllodocida and Terebellida that have been proposed on morphological grounds. Our analyses contradict the Canalipalpata and the Scolecida. Although the polychaete sister-group to the Clitellata is not clearly resolved in our analyses, the clitellates are always recovered as a derived clade within the Polychaeta. Increased taxon sampling is required to elucidate further the phylogeny of the Polychaeta.

Phylogenetic analysis of the genus Cylicocyclus (Nematoda: Strongylidae) based on nuclear ribosomal sequence data

2013 ◽  
Vol 58 (2) ◽  
Author(s):  
Yanzhen Bu ◽  
Hongxing Niu ◽  
Luping Zhang
Keyword(s):  
Phylogenetic Analysis ◽  
Internal Transcribed Spacer ◽  
Species Complex ◽  
Phylogenetic Trees ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Its Sequences ◽  
Data Sets ◽  
Reference Sequences ◽  
Second Internal Transcribed Spacer

AbstractSeven species of Cylicocyclus Ihle, 1922 (Nematoda: Strongylidae) were collected from donkeys from Henan Province, China. Five samples of each species were selected for sequencing. Sixteen different internal transcribed spacer (ITS) sequences representing the seven species of Cylicocyclus were obtained. Sequence differences in the first internal transcribed spacer (ITS-1) among species was lower than that of the second internal transcribed spacer (ITS-2). Phylogenetic analyses were conducted using the combined ITS-1 and ITS-2 data sets from the present study and using reference sequences from the GenBank database. The MP and ML trees were similar in topology. The phylogenetic trees were divided into two clades. Clade I included 8 species of Cylicocyclus; within this group, Cylicocyclus leptostomus (Kotlan, 1920) is nested between different samples of Cylicocyclus ashworthi (LeRoux, 1924), suggesting C. ashworthi may represent a species complex. Clade II included Cylicocyclus elongatus (Looss, 1900) and Cylicocyclus ultrajectinus (Ihle, 1920); however, these two species always clustered with the comparative species (Petrovinema poculatum (Looss, 1900) and Poteriostomum imparidentatum Quiel, 1919), suggesting that C. elongatus and C. ultrajectinus represent members of other genera.

Sign in / Sign up

Export Citation Format

Share Document