Effects of Ampholyte Dissociation Constants on Protein Separation in On-Chip Isoelectric Focusing

2008 ◽  
Vol 8 (7) ◽  
pp. 3719-3728 ◽  
Author(s):  
Jaesool Shim ◽  
Prashanta Dutta ◽  
Cornelius F. Ivory
2008 ◽  
Vol 8 (7) ◽  
pp. 3719-3728 ◽  
Author(s):  
Jaesool Shim ◽  
Prashanta Dutta ◽  
Cornelius F. Ivory

Numerical simulations are presented for ampholyte-based isoelectric focusing in 2D microgeometries. In this study, model proteins are focused in the presence of 25 biprotic ampholytes under an applied electric field. Each protein is considered as a simple polypeptide having ten charge states, while the biprotic ampholytes are selected to generate a shallow pH range of 6 to 9. Straight and contraction-expansion microchannels are considered here, and a nominal electric field of 300 V/cm is maintained for separation of proteins. Six distinct values of ΔpKs between 1 and 3.5 are investigated for ampholytes to form pH profiles in a 1 cm long microchannel. Simulation results show that relatively larger values of ΔpK (ΔpK > 3 are required to form stepless pH profiles in the system. The peak heights and differential resolutions of focused proteins are much higher for lower values of ΔpK for which a stepped pH profile is evident. For each protein, the time it takes for the two edges of a peak to merge increases linearly with ΔpK, while the focusing time goes up exponentially with increasing ΔpK. Both merging and focusing times of protein are higher for contraction-expansion microchannel than those of straight microchannel. For a particular value of ΔpK, the contracted "Zoom" region of contraction-expansion channel is able to form more tightly focused bands than the expanded region.


2008 ◽  
Vol 29 (5) ◽  
pp. 1026-1035 ◽  
Author(s):  
Jaesool Shim ◽  
Prashanta Dutta ◽  
Cornelius F. Ivory
Keyword(s):  

2009 ◽  
Vol 32 (3) ◽  
pp. 462-465 ◽  
Author(s):  
Yongzheng Cong ◽  
Yu Liang ◽  
Lihua Zhang ◽  
Weibing Zhang ◽  
Yukui Zhang

2005 ◽  
Author(s):  
Prashanta Dutta ◽  
Keisuke Horiuchi ◽  
Huanchun Cui ◽  
Cornelius F. Ivory

This experimental study reports a method to increase the resolving power of isoelectric focusing (IEF) on a polymeric microfluidic chip. Microfluidic chip is formed on poly-di-methyl siloxane (PDMS) using soft lithography and multilayer bonding technique. In this novel bioseparation technique, IEF is staged by first focusing protein species in a straight channel using broad-range ampholytes and then refocusing segments of that first channel into secondary channels that branch out from the first one. Experiments demonstrated that three fluorescent protein species within a segment of pH gradient in the first stage were refocused in the second stage with much higher resolution in a shallower pH gradient. A serially performed two-stage IEF was completed in less than 25 minutes under particularly small electric field strength up to 100 V/cm.


2013 ◽  
Vol 85 (12) ◽  
pp. 5909-5916 ◽  
Author(s):  
Natalia García-Otero ◽  
Elena Peña-Vázquez ◽  
María Carmen Barciela-Alonso ◽  
Pilar Bermejo-Barrera ◽  
Antonio Moreda-Piñeiro

Biosensors ◽  
2018 ◽  
Vol 8 (3) ◽  
pp. 71 ◽  
Author(s):  
Alberto Sinibaldi ◽  
Agostino Occhicone ◽  
Peter Munzert ◽  
Norbert Danz ◽  
Frank Sonntag ◽  
...  

Optical biosensors based on one-dimensional photonic crystals sustaining Bloch surface waves are proposed to study antibody interactions and perform affinity studies. The presented approach utilizes two types of different antibodies anchored at the sensitive area of a photonic crystal-based biosensor. Such a strategy allows for creating two or more on-chip regions with different biochemical features as well as studying the binding kinetics of biomolecules in real time. In particular, the proposed detection system shows an estimated limit of detection for the target antibody (anti-human IgG) smaller than 0.19 nM (28 ng/mL), corresponding to a minimum surface mass coverage of 10.3 ng/cm2. Moreover, from the binding curves we successfully derived the equilibrium association and dissociation constants (KA = 7.5 × 107 M−1; KD = 13.26 nM) of the human IgG–anti-human IgG interaction.


2008 ◽  
Vol 63 (8) ◽  
pp. 2241-2251 ◽  
Author(s):  
Jiuhua Cheng ◽  
Yi Li ◽  
Tai Shung Chung ◽  
Shing-Bor Chen ◽  
William B. Krantz

2005 ◽  
Vol 26 (16) ◽  
pp. 3185-3190 ◽  
Author(s):  
Slobodan Poznanovic ◽  
Gerhard Schwall ◽  
Helmut Zengerling ◽  
Michael A. Cahill

Sign in / Sign up

Export Citation Format

Share Document