Longitudinal study of functional brain network reorganization in clinically isolated syndrome

2018 ◽  
Vol 26 (2) ◽  
pp. 188-200 ◽  
Author(s):  
Ismail Koubiyr ◽  
Mathilde Deloire ◽  
Pierre Besson ◽  
Pierrick Coupé ◽  
Cécile Dulau ◽  
...  

Background: There is a lack of longitudinal studies exploring the topological organization of functional brain networks at the early stages of multiple sclerosis (MS). Objective: This study aims to assess potential brain functional reorganization at rest in patients with CIS (PwCIS) after 1 year of evolution and to characterize the dynamics of functional brain networks at the early stage of the disease. Methods: We prospectively included 41 PwCIS and 19 matched healthy controls (HCs). They were scanned at baseline and after 1 year. Using graph theory, topological metrics were calculated for each region. Hub disruption index was computed for each metric. Results: Hub disruption indexes of degree and betweenness centrality were negative at baseline in patients ( p < 0.05), suggesting brain reorganization. After 1 year, hub disruption indexes for degree and betweenness centrality were still negative ( p < 0.00001), but such reorganization appeared more pronounced than at baseline. Different brain regions were driving these alterations. No global efficiency differences were observed between PwCIS and HCs either at baseline or at 1 year. Conclusion: Dynamic changes in functional brain networks appear at the early stages of MS and are associated with the maintenance of normal global efficiency in the brain, suggesting a compensatory effect.

2021 ◽  
pp. 1-11
Author(s):  
Yi Liu ◽  
Zhuoyuan Li ◽  
Xueyan Jiang ◽  
Wenying Du ◽  
Xiaoqi Wang ◽  
...  

Background: Evidence suggests that subjective cognitive decline (SCD) individuals with worry have a higher risk of cognitive decline. However, how SCD-related worry influences the functional brain network is still unknown. Objective: In this study, we aimed to explore the differences in functional brain networks between SCD subjects with and without worry. Methods: A total of 228 participants were enrolled from the Sino Longitudinal Study on Cognitive Decline (SILCODE), including 39 normal control (NC) subjects, 117 SCD subjects with worry, and 72 SCD subjects without worry. All subjects completed neuropsychological assessments, APOE genotyping, and resting-state functional magnetic resonance imaging (rs-fMRI). Graph theory was applied for functional brain network analysis based on both the whole brain and default mode network (DMN). Parameters including the clustering coefficient, shortest path length, local efficiency, and global efficiency were calculated. Two-sample T-tests and chi-square tests were used to analyze differences between two groups. In addition, a false discovery rate-corrected post hoc test was applied. Results: Our analysis showed that compared to the SCD without worry group, SCD with worry group had significantly increased functional connectivity and shortest path length (p = 0.002) and a decreased clustering coefficient (p = 0.013), global efficiency (p = 0.001), and local efficiency (p <  0.001). The above results appeared in both the whole brain and DMN. Conclusion: There were significant differences in functional brain networks between SCD individuals with and without worry. We speculated that worry might result in alterations of the functional brain network for SCD individuals and then result in a higher risk of cognitive decline.


2020 ◽  
Vol 30 (10) ◽  
pp. 2050051
Author(s):  
Feng Fang ◽  
Thomas Potter ◽  
Thinh Nguyen ◽  
Yingchun Zhang

Emotion and affect play crucial roles in human life that can be disrupted by diseases. Functional brain networks need to dynamically reorganize within short time periods in order to efficiently process and respond to affective stimuli. Documenting these large-scale spatiotemporal dynamics on the same timescale they arise, however, presents a large technical challenge. In this study, the dynamic reorganization of the cortical functional brain network during an affective processing and emotion regulation task is documented using an advanced multi-model electroencephalography (EEG) and functional magnetic resonance imaging (fMRI) technique. Sliding time window correlation and [Formula: see text]-means clustering are employed to explore the functional brain connectivity (FC) dynamics during the unaltered perception of neutral (moderate valence, low arousal) and negative (low valence, high arousal) stimuli and cognitive reappraisal of negative stimuli. Betweenness centralities are computed to identify central hubs within each complex network. Results from 20 healthy subjects indicate that the cortical mechanism for cognitive reappraisal follows a ‘top-down’ pattern that occurs across four brain network states that arise at different time instants (0–170[Formula: see text]ms, 170–370[Formula: see text]ms, 380–620[Formula: see text]ms, and 620–1000[Formula: see text]ms). Specifically, the dorsolateral prefrontal cortex (DLPFC) is identified as a central hub to promote the connectivity structures of various affective states and consequent regulatory efforts. This finding advances our current understanding of the cortical response networks of reappraisal-based emotion regulation by documenting the recruitment process of four functional brain sub-networks, each seemingly associated with different cognitive processes, and reveals the dynamic reorganization of functional brain networks during emotion regulation.


2021 ◽  
Author(s):  
Jae-Joong Lee ◽  
Sungwoo Lee ◽  
Dong Hee Lee ◽  
Choong-Wan Woo

Pain is constructed through complex interactions among multiple brain systems, but it remains unclear how functional brain network representations are dynamically reconfigured over time while experiencing pain. Here, we investigated the dynamic changes in the functional brain networks during 20-min capsaicin-induced sustained orofacial pain. In the early stage, the orofacial areas of the primary somatomotor cortex were separated from the other primary somatomotor cortices and integrated with subcortical and frontoparietal regions, constituting a brain-wide pain supersystem. As pain decreased over time, the subcortical and frontoparietal regions were separated from this pain supersystem and connected to multiple cerebellar regions. Machine-learning models based on these dynamic network features showed significant predictions of changes in pain experience across two independent datasets (n = 48 and 74). This study provides new insights into how multiple brain systems dynamically interact to construct and modulate pain experience, potentially advancing our mechanistic understanding of chronic pain.


2015 ◽  
Vol 25 (03) ◽  
pp. 1550034 ◽  
Author(s):  
Adrián Navas ◽  
David Papo ◽  
Stefano Boccaletti ◽  
F. Del-Pozo ◽  
Ricardo Bajo ◽  
...  

We investigate how hubs of functional brain networks are modified as a result of mild cognitive impairment (MCI), a condition causing a slight but noticeable decline in cognitive abilities, which sometimes precedes the onset of Alzheimer's disease. We used magnetoencephalography (MEG) to investigate the functional brain networks of a group of patients suffering from MCI and a control group of healthy subjects, during the execution of a short-term memory task. Couplings between brain sites were evaluated using synchronization likelihood, from which a network of functional interdependencies was constructed and the centrality, i.e. importance, of their nodes was quantified. The results showed that, with respect to healthy controls, MCI patients were associated with decreases and increases in hub centrality respectively in occipital and central scalp regions, supporting the hypothesis that MCI modifies functional brain network topology, leading to more random structures.


2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Jinlong Hu ◽  
Lijie Cao ◽  
Tenghui Li ◽  
Shoubin Dong ◽  
Ping Li

Abstract Background Autism spectrum disorders (ASD) imply a spectrum of symptoms rather than a single phenotype. ASD could affect brain connectivity at different degree based on the severity of the symptom. Given their excellent learning capability, graph neural networks (GNN) methods have recently been used to uncover functional connectivity patterns and biological mechanisms in neuropsychiatric disorders, such as ASD. However, there remain challenges to develop an accurate GNN learning model and understand how specific decisions of these graph models are made in brain network analysis. Results In this paper, we propose a graph attention network based learning and interpreting method, namely GAT-LI, which learns to classify functional brain networks of ASD individuals versus healthy controls (HC), and interprets the learned graph model with feature importance. Specifically, GAT-LI includes a graph learning stage and an interpreting stage. First, in the graph learning stage, a new graph attention network model, namely GAT2, uses graph attention layers to learn the node representation, and a novel attention pooling layer to obtain the graph representation for functional brain network classification. We experimentally compared GAT2 model’s performance on the ABIDE I database from 1035 subjects against the classification performances of other well-known models, and the results showed that the GAT2 model achieved the best classification performance. We experimentally compared the influence of different construction methods of brain networks in GAT2 model. We also used a larger synthetic graph dataset with 4000 samples to validate the utility and power of GAT2 model. Second, in the interpreting stage, we used GNNExplainer to interpret learned GAT2 model with feature importance. We experimentally compared GNNExplainer with two well-known interpretation methods including Saliency Map and DeepLIFT to interpret the learned model, and the results showed GNNExplainer achieved the best interpretation performance. We further used the interpretation method to identify the features that contributed most in classifying ASD versus HC. Conclusion We propose a two-stage learning and interpreting method GAT-LI to classify functional brain networks and interpret the feature importance in the graph model. The method should also be useful in the classification and interpretation tasks for graph data from other biomedical scenarios.


2021 ◽  
Vol 11 (8) ◽  
pp. 1066
Author(s):  
Han Li ◽  
Qizhong Zhang ◽  
Ziying Lin ◽  
Farong Gao

Epilepsy is a chronic neurological disorder which can affect 65 million patients worldwide. Recently, network based analyses have been of great help in the investigation of seizures. Now graph theory is commonly applied to analyze functional brain networks, but functional brain networks are dynamic. Methods based on graph theory find it difficult to reflect the dynamic changes of functional brain network. In this paper, an approach to extracting features from brain functional networks is presented. Dynamic functional brain networks can be obtained by stacking multiple functional brain networks on the time axis. Then, a tensor decomposition method is used to extract features, and an ELM classifier is introduced to complete epilepsy prediction. In the prediction of epilepsy, the accuracy and F1 score of the feature extracted by tensor decomposition are higher than the degree and clustering coefficient. The features extracted from the dynamic functional brain network by tensor decomposition show better and more comprehensive performance than degree and clustering coefficient in epilepsy prediction.


2019 ◽  
Author(s):  
Mengjia Xu ◽  
Zhijiang Wang ◽  
Haifeng Zhang ◽  
Dimitrios Pantazis ◽  
Huali Wang ◽  
...  

AbstractIdentifying heterogeneous cognitive impairment markers at an early stage is vital for Alzheimer’s disease diagnosis. However, due to complex and uncertain brain connectivity features in the cognitive domains, it remains challenging to quantify functional brain connectomic changes during non-pharmacological interventions for amnestic mild cognitive impairment (aMCI) patients. We present a new quantitative functional brain network analysis of fMRI data based on the multi-graph unsupervised Gaussian embedding method (MG2G). This neural network-based model can effectively learn low-dimensional Gaussian distributions from the original high-dimensional sparse functional brain networks, quantify uncertainties in link prediction, and discover the intrinsic dimensionality of brain networks. Using the Wasserstein distance to measure probabilistic changes, we discovered that brain regions in the default mode network and somatosensory/somatomotor hand, fronto-parietal task control, memory retrieval, and visual and dorsal attention systems had relatively large variations during non-pharmacological training, which might provide distinct biomarkers for fine-grained monitoring of aMCI cognitive alteration.


2021 ◽  
Vol 15 ◽  
Author(s):  
Jared A. Rowland ◽  
Jennifer R. Stapleton-Kotloski ◽  
Greg E. Alberto ◽  
April T. Davenport ◽  
Phillip M. Epperly ◽  
...  

Purpose: A fundamental question for Alcohol use disorder (AUD) is how and when naïve brain networks are reorganized in response to alcohol consumption. The current study aimed to determine the progression of alcohol’s effect on functional brain networks during transition from the naïve state to chronic consumption.Procedures: Resting-state brain networks of six female rhesus macaque (Macaca mulatta) monkeys were acquired using magnetoencephalography (MEG) prior to alcohol exposure and after free-access to alcohol using a well-established model of chronic heavy alcohol consumption. Functional brain network metrics were derived at each time point.Results: The average connection frequency (p &lt; 0.024) and membership of the Rich Club (p &lt; 0.022) changed significantly over time. Metrics describing network topology remained relatively stable from baseline to free-access drinking. The minimum degree of the Rich Club prior to alcohol exposure was significantly predictive of future free-access drinking (r = −0.88, p &lt; 0.001).Conclusions: Results suggest naïve brain network characteristics may be used to predict future alcohol consumption, and that alcohol consumption alters functional brain networks, shifting hubs and Rich Club membership away from previous regions in a non-systematic manner. Further work to refine these relationships may lead to the identification of a high-risk drinking phenotype.


2018 ◽  
Author(s):  
Fernando A. N. Santos ◽  
Ernesto P. Raposo ◽  
Maurício D. Coutinho-Filho ◽  
Mauro Copelli ◽  
Cornelis J. Stam ◽  
...  

AbstractFunctional brain networks are often constructed by quantifying correlations among brain regions. Their topological structure includes nodes, edges, triangles and even higher-dimensional objects. Topological data analysis (TDA) is the emerging framework to process datasets under this perspective. In parallel, topology has proven essential for understanding fundamental questions in physics. Here we report the discovery of topological phase transitions in functional brain networks by merging concepts from TDA, topology, geometry, physics, and network theory. We show that topological phase transitions occur when the Euler entropy has a singularity, which remarkably coincides with the emergence of multidimensional topological holes in the brain network. Our results suggest that a major alteration in the pattern of brain correlations can modify the signature of such transitions, and may point to suboptimal brain functioning. Due to the universal character of phase transitions and noise robustness of TDA, our findings open perspectives towards establishing reliable topological and geometrical biomarkers of individual and group differences in functional brain network organization.


2017 ◽  
Author(s):  
Georgios D. Mitsis ◽  
Maria Anastasiadou ◽  
Manolis Christodoulakis ◽  
Eleftherios S. Papathanasiou ◽  
Savvas S. Papacostas ◽  
...  

AbstractThe task of automated epileptic seizure detection and prediction by using non-invasive measurements such as scalp EEG signals or invasive, intracranial recordings, has been at the heart of epilepsy studies for at least three decades. By far, the most common approach for tackling this problem is to examine short-length recordings around the occurrence of a seizure - normally ranging between several seconds and up to a few minutes before and after the epileptic event - and identify any significant changes that occur before or during the event. An inherent assumption in these studies is the presence of a relatively constant EEG activity in the interictal period, which is presumably interrupted by the occurrence of a seizure. Here, we examine this assumption by using long-duration scalp EEG data (ranging between 21 and 94 hours) in patients with epilepsy, based on which we construct functional brain networks. Our results suggest that not only these networks vary over time, but they do so in a periodic fashion, exhibiting multiple peaks at periods ranging between around one and 24 hours. The effects of seizure onset on the functional brain network properties were found to be considerably smaller in magnitude compared to the changes due to the inherent periodic cycles of these networks. Importantly, the properties of the identified network periodic components (instantaneous phase, particularly that of short-term periodicities around 3 and 5 h) were found to be strongly correlated to seizure onset. These correlations were found to be largely absent between EEG signal periodicities and seizure onset, suggesting that higher specificity may be achieved by using network-based metrics. In turn, this suggests that to achieve more robust seizure detection and/or prediction, the evolution of the underlying longer term functional brain network periodic variations should be taken into account.Highlights- We have examined the long-term characteristics of EEG functional brain networks and their correlations to seizure onset- We show periodicities over multiple time scales in network summative properties (degree, efficiency, clustering coefficient)- We also show that, in addition to average network properties, similar periodicities exist in network topology using a novel measure based on the graph edit distance, suggesting that specific connectivity patterns recur over time- These periodic patterns were preserved when we corrected for the effects of volume conduction and were found to be of much larger magnitude compared to seizure-induced modulations- For the first time to our knowledge, we demonstrate that seizure onset occurs preferentially at specific phases of network periodic components that were consistently observed across subjects, particularly for shorter periodicities (around 3 and 5 hours)- These correlations between the phase of network periodic components and seizure onset were nearly absent when examining univariate properties (EEG signal power), suggesting that network-based measures are more tightly coupled with seizure onset compared to EEG signal-based measures- Our findings suggest that seizure detection and prediction algorithms may benefit significantly by taking into account longer-term variations in brain network properties- As we show strong evidence that shorter network-based periodicities (3-5 hours) are tightly coupled with seizure onset, our results pave the way for further investigation into the pathophysiology of seizure generation mechanisms beyond the well-known effects of circadian rhythms


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