Differences in Functional Brain Networks Between Subjective Cognitive Decline with and without Worry Groups: A Graph Theory Study from SILCODE

2021 ◽  
pp. 1-11
Author(s):  
Yi Liu ◽  
Zhuoyuan Li ◽  
Xueyan Jiang ◽  
Wenying Du ◽  
Xiaoqi Wang ◽  
...  
Keyword(s):  
Graph Theory ◽  
Cognitive Decline ◽  
Path Length ◽  
Brain Networks ◽  
Brain Network ◽  
Clustering Coefficient ◽  
Subjective Cognitive Decline ◽  
Functional Brain ◽  
Functional Brain Network ◽  
Functional Brain Networks

Background: Evidence suggests that subjective cognitive decline (SCD) individuals with worry have a higher risk of cognitive decline. However, how SCD-related worry influences the functional brain network is still unknown. Objective: In this study, we aimed to explore the differences in functional brain networks between SCD subjects with and without worry. Methods: A total of 228 participants were enrolled from the Sino Longitudinal Study on Cognitive Decline (SILCODE), including 39 normal control (NC) subjects, 117 SCD subjects with worry, and 72 SCD subjects without worry. All subjects completed neuropsychological assessments, APOE genotyping, and resting-state functional magnetic resonance imaging (rs-fMRI). Graph theory was applied for functional brain network analysis based on both the whole brain and default mode network (DMN). Parameters including the clustering coefficient, shortest path length, local efficiency, and global efficiency were calculated. Two-sample T-tests and chi-square tests were used to analyze differences between two groups. In addition, a false discovery rate-corrected post hoc test was applied. Results: Our analysis showed that compared to the SCD without worry group, SCD with worry group had significantly increased functional connectivity and shortest path length (p = 0.002) and a decreased clustering coefficient (p = 0.013), global efficiency (p = 0.001), and local efficiency (p <  0.001). The above results appeared in both the whole brain and DMN. Conclusion: There were significant differences in functional brain networks between SCD individuals with and without worry. We speculated that worry might result in alterations of the functional brain network for SCD individuals and then result in a higher risk of cognitive decline.

scholarly journals Prediction of Epilepsy Based on Tensor Decomposition and Functional Brain Network

2021 ◽  
Vol 11 (8) ◽  
pp. 1066
Author(s):  
Han Li ◽  
Qizhong Zhang ◽  
Ziying Lin ◽  
Farong Gao
Keyword(s):  
Graph Theory ◽  
Brain Networks ◽  
Tensor Decomposition ◽  
Brain Network ◽  
Clustering Coefficient ◽  
Functional Brain ◽  
Dynamic Methods ◽  
Functional Brain Network ◽  
Functional Brain Networks ◽  
Elm Classifier

Epilepsy is a chronic neurological disorder which can affect 65 million patients worldwide. Recently, network based analyses have been of great help in the investigation of seizures. Now graph theory is commonly applied to analyze functional brain networks, but functional brain networks are dynamic. Methods based on graph theory find it difficult to reflect the dynamic changes of functional brain network. In this paper, an approach to extracting features from brain functional networks is presented. Dynamic functional brain networks can be obtained by stacking multiple functional brain networks on the time axis. Then, a tensor decomposition method is used to extract features, and an ELM classifier is introduced to complete epilepsy prediction. In the prediction of epilepsy, the accuracy and F1 score of the feature extracted by tensor decomposition are higher than the degree and clustering coefficient. The features extracted from the dynamic functional brain network by tensor decomposition show better and more comprehensive performance than degree and clustering coefficient in epilepsy prediction.

scholarly journals Effects of a Motor Imagery Task on Functional Brain Network Community Structure in Older Adults: Data from the Brain Networks and Mobility Function (B-NET) Study

2021 ◽  
Vol 11 (1) ◽  
pp. 118
Author(s):  
Blake R. Neyland ◽  
Christina E. Hugenschmidt ◽  
Robert G. Lyday ◽  
Jonathan H. Burdette ◽  
Laura D. Baker ◽  
...  
Keyword(s):  
Older Adults ◽  
Graph Theory ◽  
Community Structure ◽  
Resting State ◽  
Brain Networks ◽  
Brain Network ◽  
Functional Brain ◽  
Network Community ◽  
Functional Brain Networks ◽  
The Brain

Elucidating the neural correlates of mobility is critical given the increasing population of older adults and age-associated mobility disability. In the current study, we applied graph theory to cross-sectional data to characterize functional brain networks generated from functional magnetic resonance imaging data both at rest and during a motor imagery (MI) task. Our MI task is derived from the Mobility Assessment Tool–short form (MAT-sf), which predicts performance on a 400 m walk, and the Short Physical Performance Battery (SPPB). Participants (n = 157) were from the Brain Networks and Mobility (B-NET) Study (mean age = 76.1 ± 4.3; % female = 55.4; % African American = 8.3; mean years of education = 15.7 ± 2.5). We used community structure analyses to partition functional brain networks into communities, or subnetworks, of highly interconnected regions. Global brain network community structure decreased during the MI task when compared to the resting state. We also examined the community structure of the default mode network (DMN), sensorimotor network (SMN), and the dorsal attention network (DAN) across the study population. The DMN and SMN exhibited a task-driven decline in consistency across the group when comparing the MI task to the resting state. The DAN, however, displayed an increase in consistency during the MI task. To our knowledge, this is the first study to use graph theory and network community structure to characterize the effects of a MI task, such as the MAT-sf, on overall brain network organization in older adults.

Dynamic Reorganization of the Cortical Functional Brain Network in Affective Processing and Cognitive Reappraisal

2020 ◽  
Vol 30 (10) ◽  
pp. 2050051
Author(s):  
Feng Fang ◽  
Thomas Potter ◽  
Thinh Nguyen ◽  
Yingchun Zhang
Keyword(s):  
Emotion Regulation ◽  
Large Scale ◽  
Brain Networks ◽  
Cognitive Reappraisal ◽  
Brain Network ◽  
Affective Processing ◽  
Functional Brain ◽  
Affective Stimuli ◽  
Functional Brain Network ◽  
Functional Brain Networks

Emotion and affect play crucial roles in human life that can be disrupted by diseases. Functional brain networks need to dynamically reorganize within short time periods in order to efficiently process and respond to affective stimuli. Documenting these large-scale spatiotemporal dynamics on the same timescale they arise, however, presents a large technical challenge. In this study, the dynamic reorganization of the cortical functional brain network during an affective processing and emotion regulation task is documented using an advanced multi-model electroencephalography (EEG) and functional magnetic resonance imaging (fMRI) technique. Sliding time window correlation and [Formula: see text]-means clustering are employed to explore the functional brain connectivity (FC) dynamics during the unaltered perception of neutral (moderate valence, low arousal) and negative (low valence, high arousal) stimuli and cognitive reappraisal of negative stimuli. Betweenness centralities are computed to identify central hubs within each complex network. Results from 20 healthy subjects indicate that the cortical mechanism for cognitive reappraisal follows a ‘top-down’ pattern that occurs across four brain network states that arise at different time instants (0–170[Formula: see text]ms, 170–370[Formula: see text]ms, 380–620[Formula: see text]ms, and 620–1000[Formula: see text]ms). Specifically, the dorsolateral prefrontal cortex (DLPFC) is identified as a central hub to promote the connectivity structures of various affective states and consequent regulatory efforts. This finding advances our current understanding of the cortical response networks of reappraisal-based emotion regulation by documenting the recruitment process of four functional brain sub-networks, each seemingly associated with different cognitive processes, and reveals the dynamic reorganization of functional brain networks during emotion regulation.

Longitudinal study of functional brain network reorganization in clinically isolated syndrome

2018 ◽  
Vol 26 (2) ◽  
pp. 188-200 ◽  
Author(s):  
Ismail Koubiyr ◽  
Mathilde Deloire ◽  
Pierre Besson ◽  
Pierrick Coupé ◽  
Cécile Dulau ◽  
...  
Keyword(s):  
Betweenness Centrality ◽  
Early Stage ◽  
Brain Networks ◽  
Brain Network ◽  
Functional Brain ◽  
Early Stages ◽  
Global Efficiency ◽  
Functional Brain Network ◽  
Functional Brain Networks ◽  
Brain Network Reorganization

Background: There is a lack of longitudinal studies exploring the topological organization of functional brain networks at the early stages of multiple sclerosis (MS). Objective: This study aims to assess potential brain functional reorganization at rest in patients with CIS (PwCIS) after 1 year of evolution and to characterize the dynamics of functional brain networks at the early stage of the disease. Methods: We prospectively included 41 PwCIS and 19 matched healthy controls (HCs). They were scanned at baseline and after 1 year. Using graph theory, topological metrics were calculated for each region. Hub disruption index was computed for each metric. Results: Hub disruption indexes of degree and betweenness centrality were negative at baseline in patients ( p < 0.05), suggesting brain reorganization. After 1 year, hub disruption indexes for degree and betweenness centrality were still negative ( p < 0.00001), but such reorganization appeared more pronounced than at baseline. Different brain regions were driving these alterations. No global efficiency differences were observed between PwCIS and HCs either at baseline or at 1 year. Conclusion: Dynamic changes in functional brain networks appear at the early stages of MS and are associated with the maintenance of normal global efficiency in the brain, suggesting a compensatory effect.

scholarly journals Functional Hubs in Mild Cognitive Impairment

2015 ◽  
Vol 25 (03) ◽  
pp. 1550034 ◽  
Author(s):  
Adrián Navas ◽  
David Papo ◽  
Stefano Boccaletti ◽  
F. Del-Pozo ◽  
Ricardo Bajo ◽  
...  
Keyword(s):  
Cognitive Impairment ◽  
Mild Cognitive Impairment ◽  
Short Term Memory ◽  
Brain Networks ◽  
Memory Task ◽  
Brain Network ◽  
Control Group ◽  
Functional Brain ◽  
Functional Brain Network ◽  
Functional Brain Networks

We investigate how hubs of functional brain networks are modified as a result of mild cognitive impairment (MCI), a condition causing a slight but noticeable decline in cognitive abilities, which sometimes precedes the onset of Alzheimer's disease. We used magnetoencephalography (MEG) to investigate the functional brain networks of a group of patients suffering from MCI and a control group of healthy subjects, during the execution of a short-term memory task. Couplings between brain sites were evaluated using synchronization likelihood, from which a network of functional interdependencies was constructed and the centrality, i.e. importance, of their nodes was quantified. The results showed that, with respect to healthy controls, MCI patients were associated with decreases and increases in hub centrality respectively in occipital and central scalp regions, supporting the hypothesis that MCI modifies functional brain network topology, leading to more random structures.

scholarly journals GAT-LI: a graph attention network based learning and interpreting method for functional brain network classification

2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Jinlong Hu ◽  
Lijie Cao ◽  
Tenghui Li ◽  
Shoubin Dong ◽  
Ping Li
Keyword(s):  
Brain Networks ◽  
Graph Model ◽  
Brain Network ◽  
Learning Stage ◽  
Attention Network ◽  
Graph Learning ◽  
Functional Brain ◽  
Functional Brain Network ◽  
Feature Importance ◽  
Functional Brain Networks

Abstract Background Autism spectrum disorders (ASD) imply a spectrum of symptoms rather than a single phenotype. ASD could affect brain connectivity at different degree based on the severity of the symptom. Given their excellent learning capability, graph neural networks (GNN) methods have recently been used to uncover functional connectivity patterns and biological mechanisms in neuropsychiatric disorders, such as ASD. However, there remain challenges to develop an accurate GNN learning model and understand how specific decisions of these graph models are made in brain network analysis. Results In this paper, we propose a graph attention network based learning and interpreting method, namely GAT-LI, which learns to classify functional brain networks of ASD individuals versus healthy controls (HC), and interprets the learned graph model with feature importance. Specifically, GAT-LI includes a graph learning stage and an interpreting stage. First, in the graph learning stage, a new graph attention network model, namely GAT2, uses graph attention layers to learn the node representation, and a novel attention pooling layer to obtain the graph representation for functional brain network classification. We experimentally compared GAT2 model’s performance on the ABIDE I database from 1035 subjects against the classification performances of other well-known models, and the results showed that the GAT2 model achieved the best classification performance. We experimentally compared the influence of different construction methods of brain networks in GAT2 model. We also used a larger synthetic graph dataset with 4000 samples to validate the utility and power of GAT2 model. Second, in the interpreting stage, we used GNNExplainer to interpret learned GAT2 model with feature importance. We experimentally compared GNNExplainer with two well-known interpretation methods including Saliency Map and DeepLIFT to interpret the learned model, and the results showed GNNExplainer achieved the best interpretation performance. We further used the interpretation method to identify the features that contributed most in classifying ASD versus HC. Conclusion We propose a two-stage learning and interpreting method GAT-LI to classify functional brain networks and interpret the feature importance in the graph model. The method should also be useful in the classification and interpretation tasks for graph data from other biomedical scenarios.

scholarly journals Auditory Verbal Hallucination-Specific Functional Brain Networks in Schizophrenia: A Study Based on Graph Theory

2021 ◽  
Author(s):  
Weiliang Yang ◽  
Yan li ◽  
Haiyan Cao ◽  
Wen Qin ◽  
Yongying Cheng ◽  
...  
Keyword(s):  
Graph Theory ◽  
Clinical Features ◽  
Brain Networks ◽  
Brain Network ◽  
Local Network ◽  
Topological Properties ◽  
Network Efficiency ◽  
Functional Brain ◽  
Auditory Verbal Hallucinations ◽  
Functional Brain Networks

Abstract Background Although mounting previous studies have characterized auditory verbal hallucinations (AVH) related brain network abnormalities in the patients with schizophrenia, AVH related brain network alterations based on graph theory was rarely reported. In addition, the relationship between the features of AVH related brain networks based on graph theory and clinical features of schizophrenia patients with AVH is unclear. Our study to explore associations among network metrics, and clinical features in schizophrenia patients with AVH. Method Thirty-one schizophrenia patients without AVH, 17 patients with AVH, and 31 healthy controls were examined by functional magnetic resonance imaging. Graph theory method was performed to analyze the topological properties of functional network in three groups. Results Our results showed that schizophrenia patients with AVH displayed decreased local network efficiency, clustering coefficients, and nodal efficiency of the right dorsolateral prefrontal cortex. Local network efficiency was positively correlated with AVH characteristics. Conclusion The topological properties of brain functional networks are disrupted in schizophrenia patients with AVH, suggesting a role of functional brain networks in the pathogenesis of AVH.

scholarly journals Associations of the Disrupted Functional Brain Network and Cognitive Function in End-Stage Renal Disease Patients on Maintenance Hemodialysis: A Graph Theory-Based Study of Resting-State Functional Magnetic Resonance Imaging

2021 ◽  
Vol 15 ◽  
Author(s):  
Die Zhang ◽  
Yingying Chen ◽  
Hua Wu ◽  
Lin Lin ◽  
Qing Xie ◽  
...  
Keyword(s):  
Graph Theory ◽  
Cognitive Function ◽  
Brain Network ◽  
Maintenance Hemodialysis ◽  
Functional Magnetic Resonance ◽  
Functional Brain ◽  
Functional Brain Network ◽  
Functional Brain Networks ◽  
Stage Renal Disease ◽  
End Stage

Objective: Cognitive impairment (CI) is a common neurological complication in patients with end-stage renal disease undergoing maintenance hemodialysis (MHD). Brain network analysis based on graph theory is a promising tool for studying CI. Therefore, the purpose of this study was to analyze the changes of functional brain networks in patients on MHD with and without CI by using graph theory and further explore the underlying neuropathological mechanism of CI in these patients.Methods: A total of 39 patients on MHD (19 cases with CI and 20 without) and 25 healthy controls (HCs) matched for age, sex, and years of education were enrolled in the study. Resting-state functional magnetic resonance imaging (rs-fMRI) and T1-weighted high-resolution anatomical data were obtained, and functional brain networks for each subject were constructed. The brain network parameters at the global and regional levels were calculated, and a one-way analysis of covariance was used to compare the differences across the three groups. The associations between the changed graph-theory parameters and cognitive function scores in patients on MHD were evaluated using Spearman correlation analysis.Results: Compared with HCs, the global parameters [sigma, gamma, and local efficiency (Eloc)] in both patient groups decreased significantly (p &lt; 0.05, Bonferroni corrected). The clustering coefficient (Cp) in patients with CI was significantly lower than that in the other two groups (p &lt; 0.05, Bonferroni corrected). The regional parameters were significantly lower in the right superior frontal gyrus, dorsolateral (SFGdor) and gyrus rectus (REC) of patients with CI than those of patients without CI; however the nodal local efficiency in the left amygdala was significantly increased (all p &lt; 0.05, Bonferroni corrected). The global Cp and regional parameters in the three brain regions (right SFGdor, REC, and left amygdala) were significantly correlated with the cognitive function scores (all FDR q &lt; 0.05).Conclusion: This study confirmed that the topology of the functional brain network was disrupted in patients on MHD with and without CI and the disruption of brain network was more severe in patients with CI. The abnormal brain network parameters are closely related to cognitive function in patients on MHD.

scholarly journals Synchrony and complexity in state-related EEG networks: an application of spectral graph theory

2019 ◽  
Author(s):  
Amir Hossein Ghaderi ◽  
Bianca R. Baltaretu ◽  
Masood Nemati Andevari ◽  
Vishal Bharmauria ◽  
Fuat Balci
Keyword(s):  
Graph Theory ◽  
Brain Networks ◽  
Brain Regions ◽  
Brain Network ◽  
Spectral Graph Theory ◽  
Theory Approach ◽  
Topological Properties ◽  
Functional Brain ◽  
Spectral Graph ◽  
Functional Brain Networks

AbstractTo characterize differences between different state-related brain networks, statistical graph theory approaches have been employed to identify informative, topological properties. However, dynamical properties have been studied little in this regard. Our goal here was to introduce spectral graph theory as a reliable approach to determine dynamic properties of functional brain networks and to find how topological versus dynamical features differentiate between such networks. To this goal, 45 participants performed no task with eyes open (EO) or closed (EC) while electroencephalography data were recorded. These data were used to create weighted adjacency matrices for each condition (rest state EO and rest state EC). Then, using the spectral graph theory approach and Shannon entropy, we identified dynamical properties for weighted graphs, and we compared these features with topological aspects of graphs. The results showed that spectral graph theory can distinguish different state-dependent neural networks with different synchronies. On the other hand, correlation analysis indicated that although dynamical and topological properties of random networks are completely independent, these network features can be related in the case of brain generated graphs. In conclusion, the spectral graph theory approach can be used to make inferences about various state-related brain networks, for healthy and clinical populations.Author SummeryBy considering functional communications across different brain regions, a complex network is achieved that is known as functional brain network. Topologically, this network is constructed by different nodes (activity of brain regions or signals over recording electrodes) and different edges (similarity, correlation or phase difference between nodes). Paths, clusters, hubs, and centrality of nodes are examples of topological properties of these networks. However, synchrony and stability of functional brain networks can not be revealed by consideration of topological properties. Alternatively, spectral graph theory (SGT) can demonstrate the dynamic, synchrony and stability of graphs. But this approach has been studied little in brain network analysis. Here, we employed SGT, as well as topological methods, to investigate which approaches are more reliable to find differences between distinct state-related brain networks. On the other hand, we investigated correlations between topology and dynamic in different type of networks (brain generated and random networks). We found that SGT measures can clearly distinguish between distinct state-related brain networks and it can reveal synchrony and complexity of these networks. Also, results show that although dynamic and topology of random-generated graph are completely independent, these properties exhibit several correlations in the case of functional brain networks.

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