scholarly journals Differentially expressed mRNAs, proteins and miRNAs associated to energy metabolism in skeletal muscle of beef cattle identified for low and high residual feed intake

BMC Genomics ◽  
2019 ◽  
Vol 20 (1) ◽  
Author(s):  
Elisa B. Carvalho ◽  
Mateus P. Gionbelli ◽  
Rafael T. S. Rodrigues ◽  
Sarah F. M. Bonilha ◽  
Charles J. Newbold ◽  
...  
2020 ◽  
Author(s):  
Clare McKenna ◽  
Kate Keogh ◽  
Richard Porter ◽  
Sinead Waters ◽  
Paul Cormican ◽  
...  

Abstract The selection of cattle with enhanced feed efficiency is of paramount importance with regard to reducing feed costs in the beef industry. Global transcriptome profiling was undertaken on liver and skeletal muscle biopsies from Simmental heifers and bulls divergent in residual feed intake (RFI) feed efficiency phenotype, in order to identify genes that may be associated with this trait. We identified 5 genes (adj.p<0.1) to be differentially expressed in skeletal muscle between high and low RFI heifers with all transcripts involved in oxidative phosphorylation and mitochondrial homeostasis. A total of 11 genes (adj.p<0. 1) were differentially expressed in liver tissue between high and low RFI bulls with differentially expressed genes related to amino and nucleotide metabolism as well as endoplasmic reticulum protein processing. No genes were identified as differentially expressed in either heifer liver or bull muscle analyses. Results from this study show a clear effect of gender to the underlying molecular control of RFI in cattle, which may be attributable to differences in the physiological age between heifers and bulls. Despite this we have highlighted a number of genes that may hold potential as molecular biomarkers for RFI cattle.


2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Clare McKenna ◽  
Kate Keogh ◽  
Richard K. Porter ◽  
Sinead M. Waters ◽  
Paul Cormican ◽  
...  

AbstractThe selection of cattle with enhanced feed efficiency is of importance with regard to reducing feed costs in the beef industry. Global transcriptome profiling was undertaken on liver and skeletal muscle biopsies from Simmental heifers and bulls divergent for residual feed intake (RFI), a widely acknowledged feed efficiency phenotype, in order to identify genes that may be associated with this trait. We identified 5 genes (adj. p < 0.1) to be differentially expressed in skeletal muscle between high and low RFI heifers with all transcripts involved in oxidative phosphorylation and mitochondrial homeostasis. A total of 11 genes (adj. p < 0. 1) were differentially expressed in liver tissue between high and low RFI bulls with differentially expressed genes related to amino and nucleotide metabolism as well as endoplasmic reticulum protein processing. No genes were identified as differentially expressed in either heifer liver or bull muscle analyses. Results from this study show that the molecular control of RFI in young cattle is modified according to gender, which may be attributable to differences in physiological maturity between heifers and bulls of the same age. Despite this we have highlighted a number of genes that may hold potential as molecular biomarkers for RFI cattle.


animal ◽  
2020 ◽  
Vol 14 (8) ◽  
pp. 1710-1717
Author(s):  
C. McKenna ◽  
R.K. Porter ◽  
C. Fitzsimons ◽  
S.M. Waters ◽  
M. McGee ◽  
...  

2020 ◽  
Author(s):  
Clare McKenna ◽  
Kate Keogh ◽  
Richard K. Porter ◽  
Sinead M. Waters ◽  
Paul Cormican ◽  
...  

Abstract Background: The selection of cattle with enhanced feed efficiency is of paramount importance with regard to reducing feed costs in the beef industry. However the role, if any, of gender to the underlying molecular control of feed efficiency in cattle is not currently known. Global transcriptome profiling was undertaken on liver and skeletal muscle biopsies from Simmental heifers and bulls divergent in residual feed intake (RFI) feed efficiency phenotype, in order to identify differentially expressed genes that may be associated with this trait. Results: We identified 5 genes (p<0.001; false discovery rate (FDR) <0.1) to be differentially expressed in skeletal muscle between high and low RFI heifers with all 5 transcripts being up-regulated in the low RFI phenotype. Among these differentially expressed genes, all transcripts were involved in oxidative phosphorylation and mitochondrial homeostasis. A total of 11 genes (p<0.001;FDR <0.1) were differentially expressed in hepatic tissue between high and low RFI bulls with 8 transcripts being up-regulated and 3 being down-regulated in the low RFI phenotype. These differentially expressed genes were related to oxidative response, protein mediation and cell signalling. No genes were identified as differentially expressed in both heifer liver and bull muscle analyses. Conclusions: Results from this study show a clear effect of gender to the underlying molecular control of RFI in cattle, which may be attributable to differences in the physiological age between heifers and bulls. Despite this we have highlighted a number of genes that may hold potential as molecular biomarkers for RFI cattle.


2019 ◽  
Vol 97 (5) ◽  
pp. 2181-2187
Author(s):  
Ahmed A Elolimy ◽  
Emad Abdel-Hamied ◽  
Liangyu Hu ◽  
Joshua C McCann ◽  
Daniel W Shike ◽  
...  

Abstract Residual feed intake (RFI) is a widely used measure of feed efficiency in cattle. Although the precise biologic mechanisms associated with improved feed efficiency are not well-known, most-efficient steers (i.e., with low RFI coefficient) downregulate abundance of proteins controlling protein degradation in skeletal muscle. Whether cellular mechanisms controlling protein turnover in ruminal tissue differ by RFI classification is unknown. The aim was to investigate associations between RFI and signaling through the mechanistic target of rapamycin (MTOR) and ubiquitin-proteasome pathways in ruminal epithelium. One hundred and forty-nine Red Angus cattle were allocated to 3 contemporary groups according to sex and herd origin. Animals were offered a finishing diet for 70 d to calculate the RFI coefficient for each. Within each group, the 2 most-efficient (n = 6) and least-efficient animals (n = 6) were selected. Compared with least-efficient animals, the most-efficient animals consumed less feed (P &lt; 0.05; 18.36 vs. 23.39 kg/d DMI). At day 70, plasma samples were collected for insulin concentration analysis. Ruminal epithelium was collected immediately after slaughter to determine abundance and phosphorylation status of 29 proteins associated with MTOR, ubiquitin-proteasome, insulin signaling, and glucose and amino acid transport. Among the proteins involved in cellular protein synthesis, most-efficient animals had lower (P ≤ 0.05) abundance of MTOR, p-MTOR, RPS6KB1, EIF2A, EEF2K, AKT1, and RPS6KB1, whereas MAPK3 tended (P = 0.07) to be lower. In contrast, abundance of p-EEF2K, p-EEF2K:EEF2K, and p-EIF2A:EIF2A in most-efficient animals was greater (P ≤ 0.05). Among proteins catalyzing steps required for protein degradation, the abundance of UBA1, NEDD4, and STUB1 was lower (P ≤ 0.05) and MDM2 tended (P = 0.06) to be lower in most-efficient cattle. Plasma insulin and ruminal epithelium insulin signaling proteins did not differ (P &gt; 0.05) between RFI groups. However, abundance of the insulin-responsive glucose transporter SLC2A4 and the amino acid transporters SLC1A3 and SLC1A5 also was lower (P ≤ 0.05) in most-efficient cattle. Overall, the data indicate that differences in signaling mechanisms controlling protein turnover and nutrient transport in ruminal epithelium are components of feed efficiency in beef cattle.


2020 ◽  
Vol 100 (8) ◽  
pp. 3536-3543 ◽  
Author(s):  
Carolina F Campos ◽  
Thaís C Costa ◽  
Rafael T S Rodrigues ◽  
Simone E F Guimarães ◽  
Felipe H Moura ◽  
...  

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