Concordance rate between copy number variants detected using either high- or medium-density single nucleotide polymorphism genotype panels and the potential of imputing copy number variants from flanking high density single nucleotide polymorphism haplotypes in cattle

Pierce Rafter; Isobel Claire Gormley; Andrew C. Parnell; John Francis Kearney; Donagh P. Berry

doi:10.1186/s12864-020-6627-8

Concordance rate between copy number variants detected using either high- or medium-density single nucleotide polymorphism genotype panels and the potential of imputing copy number variants from flanking high density single nucleotide polymorphism haplotypes in cattle

BMC Genomics ◽

10.1186/s12864-020-6627-8 ◽

2020 ◽

Vol 21 (1) ◽

Cited By ~ 1

Author(s):

Pierce Rafter ◽

Isobel Claire Gormley ◽

Andrew C. Parnell ◽

John Francis Kearney ◽

Donagh P. Berry

Keyword(s):

Single Nucleotide Polymorphism ◽

Copy Number ◽

Copy Number Variants ◽

High Density ◽

Concordance Rate ◽

Single Nucleotide Polymorphism Genotype ◽

Medium Density ◽

Nucleotide Polymorphism ◽

Single Nucleotide

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Characterization of copy number variants in a large multibreed population of beef and dairy cattle using high-density single nucleotide polymorphism genotype data1

Journal of Animal Science ◽

10.1093/jas/sky302 ◽

2018 ◽

Vol 96 (10) ◽

pp. 4112-4124 ◽

Cited By ~ 3

Author(s):

Pierce Rafter ◽

Deirdre C Purfield ◽

Donagh P Berry ◽

Andrew C Parnell ◽

I Claire Gormley ◽

...

Keyword(s):

Single Nucleotide Polymorphism ◽

Dairy Cattle ◽

Copy Number ◽

Copy Number Variants ◽

High Density ◽

Single Nucleotide Polymorphism Genotype ◽

Nucleotide Polymorphism ◽

Single Nucleotide

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Genome-wide profiling of DNA copy number abnormalities in adult acute myeloid leukemia (AML) using high density single nucleotide polymorphism array

Journal of Clinical Oncology ◽

10.1200/jco.2008.26.15_suppl.7023 ◽

2008 ◽

Vol 26 (15_suppl) ◽

pp. 7023-7023

Author(s):

E. Ottaviani ◽

I. Iacobucci ◽

A. Astolfi ◽

F. Salmi ◽

N. Testoni ◽

...

Keyword(s):

Single Nucleotide Polymorphism ◽

Acute Myeloid Leukemia ◽

Copy Number ◽

Myeloid Leukemia ◽

Single Nucleotide Polymorphism Array ◽

High Density ◽

Nucleotide Polymorphism ◽

Single Nucleotide ◽

Genome Wide ◽

Acute Myeloid

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Genome-Wide Loss of Heterozygosity and Copy Number Analysis in Melanoma Using High-Density Single-Nucleotide Polymorphism Arrays

Cancer Research ◽

10.1158/0008-5472.can-06-4152 ◽

2007 ◽

Vol 67 (6) ◽

pp. 2632-2642 ◽

Cited By ~ 166

Author(s):

Mitchell Stark ◽

Nicholas Hayward

Keyword(s):

Single Nucleotide Polymorphism ◽

Loss Of Heterozygosity ◽

Copy Number ◽

High Density ◽

Copy Number Analysis ◽

Nucleotide Polymorphism ◽

Single Nucleotide ◽

Genome Wide

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Genome-wide analysis of copy number changes and loss of heterozygosity in myelodysplastic syndrome with del(5q) using high-density single nucleotide polymorphism arrays

Haematologica ◽

10.3324/haematol.12603 ◽

2008 ◽

Vol 93 (7) ◽

pp. 994-1000 ◽

Cited By ~ 30

Author(s):

L. Wang ◽

C. Fidler ◽

N. Nadig ◽

A. Giagounidis ◽

M. G. Della Porta ◽

...

Keyword(s):

Single Nucleotide Polymorphism ◽

Myelodysplastic Syndrome ◽

Loss Of Heterozygosity ◽

Copy Number ◽

High Density ◽

Nucleotide Polymorphism ◽

Single Nucleotide ◽

Genome Wide Analysis ◽

Genome Wide ◽

Copy Number Changes

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Genome-wide identification of copy number variation using high-density single-nucleotide polymorphism array in Japanese Black cattle

BMC Genetics ◽

10.1186/s12863-016-0335-z ◽

2016 ◽

Vol 17 (1) ◽

Cited By ~ 16

Author(s):

Shinji Sasaki ◽

Toshio Watanabe ◽

Shota Nishimura ◽

Yoshikazu Sugimoto

Keyword(s):

Single Nucleotide Polymorphism ◽

Copy Number Variation ◽

Copy Number ◽

Single Nucleotide Polymorphism Array ◽

High Density ◽

Nucleotide Polymorphism ◽

Japanese Black Cattle ◽

Single Nucleotide ◽

Genome Wide ◽

Number Variation

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Intracystic Papillary Carcinoma of Breast Harbors Significant Genomic Alteration Compared with Intracystic Papilloma: Genome-wide Copy Number and LOH Analysis Using High-Density Single-Nucleotide Polymorphism Microarrays

The Breast Journal ◽

10.1111/j.1524-4741.2011.01110.x ◽

2011 ◽

Vol 17 (4) ◽

pp. 427-430 ◽

Cited By ~ 6

Author(s):

Masahiro Oikawa ◽

Takeshi Nagayasu ◽

Hiroshi Yano ◽

Tomayoshi Hayashi ◽

Kuniko Abe ◽

...

Keyword(s):

Single Nucleotide Polymorphism ◽

Papillary Carcinoma ◽

Copy Number ◽

High Density ◽

Genomic Alteration ◽

Nucleotide Polymorphism ◽

Single Nucleotide ◽

Genome Wide ◽

Intracystic Papillary Carcinoma ◽

Intracystic Papilloma

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A Robust Algorithm for Copy Number Detection Using High-Density Oligonucleotide Single Nucleotide Polymorphism Genotyping Arrays

Cancer Research ◽

10.1158/0008-5472.can-05-0465 ◽

2005 ◽

Vol 65 (14) ◽

pp. 6071-6079 ◽

Cited By ~ 466

Author(s):

Yasuhito Nannya ◽

Masashi Sanada ◽

Kumi Nakazaki ◽

Noriko Hosoya ◽

Lili Wang ◽

...

Keyword(s):

Single Nucleotide Polymorphism ◽

Copy Number ◽

High Density ◽

Single Nucleotide Polymorphism Genotyping ◽

Nucleotide Polymorphism ◽

Single Nucleotide ◽

Robust Algorithm ◽

Copy Number Detection

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Comparison of genomic predictions using medium-density (∼54,000) and high-density (∼777,000) single nucleotide polymorphism marker panels in Nordic Holstein and Red Dairy Cattle populations

Journal of Dairy Science ◽

10.3168/jds.2012-5379 ◽

2012 ◽

Vol 95 (8) ◽

pp. 4657-4665 ◽

Cited By ~ 81

Author(s):

G. Su ◽

R.F. Brøndum ◽

P. Ma ◽

B. Guldbrandtsen ◽

G.P. Aamand ◽

...

Keyword(s):

Single Nucleotide Polymorphism ◽

Dairy Cattle ◽

Single Nucleotide Polymorphism Marker ◽

High Density ◽

Medium Density ◽

Nucleotide Polymorphism ◽

Single Nucleotide ◽

Genomic Predictions

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Identification of copy number variations using high density whole-genome single nucleotide polymorphism markers in Chinese Dongxiang spotted pigs

Asian-Australasian Journal of Animal Sciences ◽

10.5713/ajas.18.0696 ◽

2019 ◽

Vol 32 (12) ◽

pp. 1809-1815

Author(s):

Chengbin Wang ◽

Hao Chen ◽

Xiaopeng Wang ◽

Zhongping Wu ◽

Weiwei Liu ◽

...

Keyword(s):

Single Nucleotide Polymorphism ◽

Copy Number ◽

Copy Number Variations ◽

High Density ◽

Whole Genome ◽

Nucleotide Polymorphism ◽

Single Nucleotide

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Genome-wide DNA copy number analysis in pancreatic cancer using high-density single nucleotide polymorphism arrays

Oncogene ◽

10.1038/sj.onc.1210832 ◽

2007 ◽

Vol 27 (13) ◽

pp. 1951-1960 ◽

Cited By ~ 91

Author(s):

T Harada ◽

C Chelala ◽

V Bhakta ◽

T Chaplin ◽

K Caulee ◽

...

Keyword(s):

Pancreatic Cancer ◽

Single Nucleotide Polymorphism ◽

Copy Number ◽

High Density ◽

Copy Number Analysis ◽

Nucleotide Polymorphism ◽

Dna Copy Number ◽

Single Nucleotide ◽

Genome Wide

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