Comparison of genomic predictions using medium-density (∼54,000) and high-density (∼777,000) single nucleotide polymorphism marker panels in Nordic Holstein and Red Dairy Cattle populations

G. Su; R.F. Brøndum; P. Ma; B. Guldbrandtsen; G.P. Aamand; M.S. Lund

doi:10.3168/jds.2012-5379

Comparison of genomic predictions using medium-density (∼54,000) and high-density (∼777,000) single nucleotide polymorphism marker panels in Nordic Holstein and Red Dairy Cattle populations

Journal of Dairy Science ◽

10.3168/jds.2012-5379 ◽

2012 ◽

Vol 95 (8) ◽

pp. 4657-4665 ◽

Cited By ~ 81

Author(s):

G. Su ◽

R.F. Brøndum ◽

P. Ma ◽

B. Guldbrandtsen ◽

G.P. Aamand ◽

...

Keyword(s):

Single Nucleotide Polymorphism ◽

Dairy Cattle ◽

Single Nucleotide Polymorphism Marker ◽

High Density ◽

Medium Density ◽

Nucleotide Polymorphism ◽

Single Nucleotide ◽

Genomic Predictions

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Improving accuracy of genomic predictions within and between dairy cattle breeds with imputed high-density single nucleotide polymorphism panels

Journal of Dairy Science ◽

10.3168/jds.2011-5019 ◽

2012 ◽

Vol 95 (7) ◽

pp. 4114-4129 ◽

Cited By ~ 329

Author(s):

M. Erbe ◽

B.J. Hayes ◽

L.K. Matukumalli ◽

S. Goswami ◽

P.J. Bowman ◽

...

Keyword(s):

Single Nucleotide Polymorphism ◽

Dairy Cattle ◽

High Density ◽

Nucleotide Polymorphism ◽

Single Nucleotide ◽

Cattle Breeds ◽

Improving Accuracy ◽

Genomic Predictions

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Erratum to “Improving accuracy of genomic predictions within and between dairy cattle breeds with imputed high-density single nucleotide polymorphism panels” (J. Dairy Sci. 95:4114–4129)

Journal of Dairy Science ◽

10.3168/jds.2014-97-10-6622 ◽

2014 ◽

Vol 97 (10) ◽

pp. 6622 ◽

Cited By ~ 5

Author(s):

M. Erbe ◽

B.J. Hayes ◽

L.K. Matukumalli ◽

S. Goswami ◽

P.J. Bowman ◽

...

Keyword(s):

Single Nucleotide Polymorphism ◽

Dairy Cattle ◽

High Density ◽

Nucleotide Polymorphism ◽

Single Nucleotide ◽

Cattle Breeds ◽

Improving Accuracy ◽

Genomic Predictions

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Concordance rate between copy number variants detected using either high- or medium-density single nucleotide polymorphism genotype panels and the potential of imputing copy number variants from flanking high density single nucleotide polymorphism haplotypes in cattle

BMC Genomics ◽

10.1186/s12864-020-6627-8 ◽

2020 ◽

Vol 21 (1) ◽

Cited By ~ 1

Author(s):

Pierce Rafter ◽

Isobel Claire Gormley ◽

Andrew C. Parnell ◽

John Francis Kearney ◽

Donagh P. Berry

Keyword(s):

Single Nucleotide Polymorphism ◽

Copy Number ◽

Copy Number Variants ◽

High Density ◽

Concordance Rate ◽

Single Nucleotide Polymorphism Genotype ◽

Medium Density ◽

Nucleotide Polymorphism ◽

Single Nucleotide

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Use of High Density Single Nucleotide Polymorphism (SNP) Arrays to Assess Genetic Diversity and Population Structure of Dairy Cattle in Smallholder Dairy Systems: The Case of Girinka Programme in Rwanda

Frontiers in Genetics ◽

10.3389/fgene.2018.00438 ◽

2018 ◽

Vol 9 ◽

Author(s):

Mizeck G. G. Chagunda ◽

Fidalis D. N. Mujibi ◽

Theogene Dusingizimana ◽

Olivier Kamana ◽

Evans Cheruiyot ◽

...

Keyword(s):

Genetic Diversity ◽

Single Nucleotide Polymorphism ◽

Population Structure ◽

Dairy Cattle ◽

High Density ◽

Nucleotide Polymorphism ◽

Single Nucleotide ◽

Snp Arrays ◽

Smallholder Dairy ◽

Dairy Systems

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Characterization of copy number variants in a large multibreed population of beef and dairy cattle using high-density single nucleotide polymorphism genotype data1

Journal of Animal Science ◽

10.1093/jas/sky302 ◽

2018 ◽

Vol 96 (10) ◽

pp. 4112-4124 ◽

Cited By ~ 3

Author(s):

Pierce Rafter ◽

Deirdre C Purfield ◽

Donagh P Berry ◽

Andrew C Parnell ◽

I Claire Gormley ◽

...

Keyword(s):

Single Nucleotide Polymorphism ◽

Dairy Cattle ◽

Copy Number ◽

Copy Number Variants ◽

High Density ◽

Single Nucleotide Polymorphism Genotype ◽

Nucleotide Polymorphism ◽

Single Nucleotide

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Strategies for single nucleotide polymorphism (SNP) genotyping to enhance genotype imputation in Gyr (Bos indicus) dairy cattle: Comparison of commercially available SNP chips

Journal of Dairy Science ◽

10.3168/jds.2014-9213 ◽

2015 ◽

Vol 98 (7) ◽

pp. 4969-4989 ◽

Cited By ~ 20

Author(s):

S.A. Boison ◽

D.J.A. Santos ◽

A.H.T. Utsunomiya ◽

R. Carvalheiro ◽

H.H.R. Neves ◽

...

Keyword(s):

Single Nucleotide Polymorphism ◽

Dairy Cattle ◽

Bos Indicus ◽

Snp Genotyping ◽

Genotype Imputation ◽

Nucleotide Polymorphism ◽

Single Nucleotide

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Single-nucleotide polymorphism discovery and validation in high-density SNP array for genetic analysis in European white oaks

Molecular Ecology Resources ◽

10.1111/1755-0998.12407 ◽

2015 ◽

Vol 15 (6) ◽

pp. 1446-1459 ◽

Cited By ~ 25

Author(s):

C. Lepoittevin ◽

C. Bodénès ◽

E. Chancerel ◽

L. Villate ◽

T. Lang ◽

...

Keyword(s):

Single Nucleotide Polymorphism ◽

Genetic Analysis ◽

Snp Array ◽

High Density ◽

Single Nucleotide Polymorphism Discovery ◽

Nucleotide Polymorphism ◽

Single Nucleotide ◽

Polymorphism Discovery

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Genome-wide association studies for mottled eggs in chickens using a high-density single-nucleotide polymorphism array

animal ◽

10.1016/j.animal.2020.100051 ◽

2021 ◽

Vol 15 (1) ◽

pp. 100051

Author(s):

L. Qu ◽

M.M. Shen ◽

T.C. Dou ◽

M. Ma ◽

J. Lu ◽

...

Keyword(s):

Single Nucleotide Polymorphism ◽

Single Nucleotide Polymorphism Array ◽

Association Studies ◽

High Density ◽

Genome Wide Association ◽

Genome Wide Association Studies ◽

Nucleotide Polymorphism ◽

Single Nucleotide ◽

Genome Wide

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Genetic basis of maize ear angle revealed by high-density single nucleotide polymorphism markers in four recombinant inbred line populations

Euphytica ◽

10.1007/s10681-020-02662-2 ◽

2020 ◽

Vol 216 (8) ◽

Author(s):

Jingwei Lin ◽

Shoukun Li ◽

Gengyuan Liang ◽

Meiling Liu ◽

Taicheng Jin ◽

...

Keyword(s):

Single Nucleotide Polymorphism ◽

Inbred Line ◽

Recombinant Inbred Line ◽

Recombinant Inbred ◽

Genetic Basis ◽

High Density ◽

Nucleotide Polymorphism ◽

Single Nucleotide ◽

Maize Ear

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Mapping of hereditary mixed polyposis syndrome (HMPS) to chromosome 10q23 by genomewide high-density single nucleotide polymorphism (SNP) scan and identification of BMPR1A loss of function

Journal of Medical Genetics ◽

10.1136/jmg.2005.034827 ◽

2005 ◽

Vol 43 (3) ◽

pp. e13-e13 ◽

Cited By ~ 55

Author(s):

X Cao

Keyword(s):

Single Nucleotide Polymorphism ◽

High Density ◽

Loss Of Function ◽

Nucleotide Polymorphism ◽

Polyposis Syndrome ◽

Single Nucleotide

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