scholarly journals Investigation of the molecular characteristics of Brucella isolates from Guangxi Province, China

2019 ◽  
Vol 19 (1) ◽  
Author(s):  
Zhi-guo Liu ◽  
Miao Wang ◽  
Hong-yan Zhao ◽  
Dong-ri Piao ◽  
Hai Jiang ◽  
...  
Keyword(s):  
Brucella Melitensis ◽  
Variable Number Tandem Repeat ◽  
Genomic Analysis ◽  
Public Health Problem ◽  
Variable Number ◽  
Comparative Genomic ◽  
Human Brucellosis ◽  
Molecular Characteristics ◽  
Genetic Lineage ◽  
Guangxi Province

Abstract Background Human brucellosis has become a severe public health problem in China’s Guangxi Province, and there has been higher prevalence of brucellosis in this region after 2010. Both multiple locus variable-number tandem repeat analysis (MLVA) and multilocus sequence typing (MLST) assay schedules were used to genotype isolates and determine relationships among isolates. Results A total of 40 isolates of Brucella were obtained from humans, pigs, and dogs from 1961 to 2016. There were at least three species of Brucella detected in Guangxi Province, Brucella melitensis, Brucella suis, and Brucella canis, with 16, 17, and 7 isolates, respectively. Of which B. suis biovar 3 was the predominant species resulting in pig brucellosis in the area examined before 2000s. Moreover, B. melitensis biovar 3 was found to be mainly responsible for human brucellosis during 2012–2016. All B. melitensis isolates in this study belonged to East Mediterranean lineage. MLVA-11 genotype 116 was the dominant genotype and represented 81.2% of the isolates. MLVA cluster analysis showed there to be 44% (7/16) brucellosis cases caused by B. melitensis with a profile of outbreak epidemic from 2012 to 2016. However, nearly 83.3% (20/24) of brucellosis cases resulting from both B. suis and B. canis showed no epidemiological links or sporadic characteristics. MLVA-16 analysis confirmed extensive genotype-sharing events between B. melitensis isolates from Guangxi and other northern provinces within China. These data revealed that there are potential epidemiology links among these strains. B. suis strains of this study showed a unique genetic lineage at the global level and may have existed historically in this area. However, present B. canis isolates were closely related to previously reported isolates in Korea, where they may have originated. MLST typing showed that the population structure of Brucella strains had changed considerably in this province; ST17 and ST21, two previously predominant populations appeared to have been replaced by recently emerging ST8 group. Conclusions Our investigation data have inspired the hypothesis that Guangxi Province had been subject to an imported human brucellosis epidemic. Our data suggest that strains found in Northern regions of China are the principal source of infections in recent cases of human brucellosis in Guangxi Province. Comparative genomic analysis from more strains is necessary to confirm this hypothesis. This work will facilitate better understanding of the epidemiology and improve the effectiveness of control and prevention of brucellosis in this region.

scholarly journals Molecular characteristics of Brucella melitensis isolates from humans in Qinghai Province, China

2021 ◽  
Vol 10 (1) ◽  
Author(s):  
Zhi-Jun Zhao ◽  
Ji-Quan Li ◽  
Li Ma ◽  
Hong-Mei Xue ◽  
Xu-Xin Yang ◽  
...  
Keyword(s):  
Tandem Repeats ◽  
Brucella Melitensis ◽  
Draft Genome ◽  
Geographic Origin ◽  
Variable Number ◽  
Human Brucellosis ◽  
Molecular Characteristics ◽  
Whole Genome ◽  
Qinghai Province ◽  
Variable Number Tandem Repeats

Abstract Background The prevalence of human brucellosis in Qinghai Province of China has been increasing rapidly, with confirmed cases distributed across 31 counties. However, the epidemiology of brucellosis transmission has not been fully elucidated. To characterize the infecting strains isolated from humans, multiple-locus variable-number tandem repeats analysis (MLVA) and whole-genome single-nucleotide polymorphism (SNP)-based approaches were employed. Methods Strains were isolated from two males blood cultures that were confirmed Brucella melitensis positive following biotyping and MLVA. Genomic DNA was extracted from these two strains, and whole-genome sequencing was performed. Next, SNP-based phylogenetic analysis was performed to compare the two strains to 94 B. melitensis strains (complete genome and draft genome) retrieved from online databases. Results The two Brucella isolates were identified as B. melitensis biovar 3 (QH2019001 and QH2019005) following conventional biotyping and were found to have differences in their variable number tandem repeats (VNTRs) using MLVA-16. Phylogenetic examination assigned the 96 strains to five genotype groups, with QH2019001 and QH2019005 assigned to the same group, but different subgroups. Moreover, the QH2019005 strain was assigned to a new subgenotype, IIj, within genotype II. These findings were then combined to determine the geographic origin of the two Brucella strains. Conclusions Utilizing a whole-genome SNP-based approach enabled differences between the two B. melitensis strains to be more clearly resolved, and facilitated the elucidation of their different evolutionary histories. This approach also revealed that QH2019005 is a member of a new subgenotype (IIj) with an ancient origin in the eastern Mediterranean Sea.

scholarly journals Molecular characteristics of Brucella melitensis isolates from humans in Qinghai Province, China

2020 ◽  
Author(s):  
Zhijun Zhao ◽  
Jiquan Li ◽  
Li Ma ◽  
Hongmei Xue ◽  
Xuxin Yang ◽  
...  
Keyword(s):  
Tandem Repeats ◽  
Brucella Melitensis ◽  
Draft Genome ◽  
Geographic Origin ◽  
Variable Number ◽  
Human Brucellosis ◽  
Molecular Characteristics ◽  
Whole Genome ◽  
Qinghai Province ◽  
Variable Number Tandem Repeats

Abstract Background The prevalence of human brucellosis in Qinghai Province has been increasing rapidly, with confirmed cases distributed across 31 counties. However, the epidemiology of brucellosis transmission has not been fully elucidated. To characterize the two isolated strains, multiple locus variable-number tandem repeats analysis (MLVA) and whole-genome single-nucleotide polymorphism (SNP)-based approaches were employed. Methods Blood samples were isolated from two males that were confirmed B. melitensis positive following MLVA. Genomic DNA was extracted from these samples, and whole-genome sequencing (WGS) was performed. Next, SNP-based phylogenetic analysis was performed to compare the two strains to 94 B. melitensis strains (complete genome and draft genome) retrieved from online databases. Results The two Brucella isolates were identified as B. melitensis biovar 3 (QH2019001 and QH2019005) following conventional biotyping and were found to have differences in their variable number tandem repeats (VNTRs) using MLVA-16. Phylogenetic examination assigned the 96 strains to five genotype groups, with QH2019001 and QH2019005 assigned to the same group, but different subgroups. Moreover, the QH2019005 strain was assigned to a new subgenotype, IIj, within genotype II. These findings were then combined to determine the geographic origin of the two Brucella strains. Conclusions Utilizing a whole-genome SNP-based approach enabled differences between the two B. melitensis strains to be more clearly resolved, and facilitated the elucidation of their different evolutionary histories. This approach also revealed that QH2019005 is a member of a new subgenotype (IIj) with an ancient origin in the eastern Mediterranean Sea.

Using molecular tools to identify the geographical origin of a case of human brucellosis

2015 ◽  
Vol 143 (14) ◽  
pp. 3110-3113
Author(s):  
J. K. MUCHOWSKI ◽  
M. S. KOYLASS ◽  
A. C. DAINTY ◽  
J. A. STACK ◽  
L. PERRETT ◽  
...  
Keyword(s):  
Brucella Melitensis ◽  
Variable Number Tandem Repeat ◽  
Human Case ◽  
Variable Number ◽  
Human Brucellosis ◽  
Horn Of Africa ◽  
Trace Back ◽  
Distinct Cluster ◽  
Control Schemes ◽  
The Individual

SUMMARYAlthough Malta is historically linked with the zoonosis brucellosis, there had not been a case of the disease in either the human or livestock population for several years. However, in July 2013 a case of human brucellosis was identified on the island. To determine whether this recent case originated in Malta, four isolates from this case were subjected to molecular analysis. Molecular profiles generated using multilocus sequence analysis and multilocus variable number tandem repeat for the recent human case isolates and 11 Brucella melitensis strains of known Maltese origin were compared with others held on in-house and global databases. While the 11 isolates of Maltese origin formed a distinct cluster, the recent human isolation was not associated with these strains but instead clustered with isolates originating from the Horn of Africa. These data was congruent with epidemiological trace-back showed that the individual had travelled to Malta from Eritrea. This work highlights the potential of using molecular typing data to aid in epidemiological trace-back of Brucella isolations and assist in monitoring of the effectiveness of brucellosis control schemes.

scholarly journals Whole Genome Sequencing for Tracing Geographical Origin of Imported Cases of Human Brucellosis in Sweden

2019 ◽  
Vol 7 (10) ◽  
pp. 398 ◽  
Author(s):  
Sacchini ◽  
Wahab ◽  
Di Giannatale ◽  
Zilli ◽  
Abass ◽  
...  
Keyword(s):  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Tandem Repeats ◽  
Brucella Melitensis ◽  
Geographic Origin ◽  
Variable Number ◽  
Human Brucellosis ◽  
Whole Genome ◽  
Multiple Loci ◽  
Imported Cases

Human infections with Brucella melitensis are occasionally reported in Sweden, despite the fact that the national flocks of sheep and goats are officially free from brucellosis. The aim of our study was to analyze 103 isolates of B. melitensis collected from patients in Sweden between 1994 and 2016 and determine their putative geographic origin using whole genome sequencing (WGS)-based tools. The majority of the strains were assigned to East Mediterranean and African lineages. Both in silico Multiple Loci VNTR (Variable Number of Tandem Repeats) Analysis (MLVA) and core genome Multilocus Sequence Typing (cgMLST) analyses identified countries of the Middle East as the most probable source of origin of the majority of the strains. Isolates collected from patients with travel history to Iraq or Syria were often associated with genotypes from Turkey, as the cgMLST profiles from these countries clustered together. Sixty strains were located within a distance of 20 core genes to related genotypes from the publicly available database, and for eighteen isolates, the closest genotype was different by more than 50 loci. Our study showed that WGS based tools are effective in tracing back the geographic origin of infection of patients with unknown travel status, provided that public sequences from the location of the source are available.

Assessment of genetic stability of Brucella melitensis Rev 1 vaccine strain by multiple-locus variable-number tandem repeat analysis

Vaccine ◽  
2007 ◽  
Vol 25 (15) ◽  
pp. 2858-2862 ◽  
Author(s):  
David García-Yoldi ◽  
Philippe Le Fleche ◽  
Clara M. Marín ◽  
María J. De Miguel ◽  
Pilar M. Muñoz ◽  
...  
Keyword(s):  
Vaccine Strain ◽  
Tandem Repeat ◽  
Genetic Stability ◽  
Brucella Melitensis ◽  
Variable Number Tandem Repeat ◽  
Variable Number ◽  
Multiple Locus ◽  
Repeat Analysis

scholarly journals Whole-Genome Sequencing of a Brucella melitensis Strain (BMWS93) Isolated from a Bank Clerk and Exhibiting Complete Resistance to Rifampin

2019 ◽  
Vol 8 (33) ◽  
Author(s):  
Zhi-guo Liu ◽  
Xiao-an Cao ◽  
Miao Wang ◽  
Dong-ri Piao ◽  
Hong-yan Zhao ◽  
...  
Keyword(s):  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Inner Mongolia ◽  
Brucella Melitensis ◽  
Public Health Problem ◽  
Human Brucellosis ◽  
Whole Genome ◽  
Zone Of Inhibition ◽  
Content Type

Human brucellosis has become the most severe public health problem in the Ulanqab region of Inner Mongolia, China. Brucella melitensis BMWS93 was obtained from a blood sample taken from a bank clerk in the Ulanqab region of Inner Mongolia, China, and antimicrobial susceptibility testing in vitro showed no zone of inhibition, which confirmed resistance to rifampin. Therefore, whole-genome sequencing of this isolate was performed to better understand the mechanism of this resistance.

scholarly journals Incidental Laboratory Identification of Brucella melitensis in a case with Pancytopenia

2021 ◽  
Vol 10 (10) ◽  
pp. 193-198
Author(s):  
Mahalakshmi Kumaresan Lakshmi Shanmugam ◽  
Ketan Priyadarshi Mahathi Gopalakrishnan ◽  
Tamilarasu Kadhiravan Apurba Sankar Sastry
Keyword(s):  
Bone Marrow ◽  
Brucella Melitensis ◽  
Public Health Problem ◽  
Febrile Illness ◽  
Human Brucellosis ◽  
Automated Identification ◽  
Serological Tests ◽  
Test Culture ◽  
Significant Public Health Problem ◽  
Significant Public Health

Brucellosis is a bacterial zoonosis usually associated with exposure to infected animals or their products. Although a significant public health problem in India, exact prevalence and distribution are unknown owing to the imprecision of diagnosis and inadequacy of reporting and surveillance. Although the febrile illness is common, its manifestations are highly variable. Bone marrow suppression and consequent pancytopenia have been rarely reported. We present a case of 50 years old female diagnosed with human brucellosis associated with pancytopenia and non-specific clinical presentation, that was diagnosed incidentally on blood and bone-marrow culture. This was confirmed by serological tests like the standard agglutination test. Culture isolation using automated blood culture (e.g. BacT/ALERT), followed by identification using automated identification systems (e.g. MALDI-TOF and VITEK-2) help to reach accurate and timely diagnosis aiding in the management of the patient.

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