scholarly journals Stacked survival models for residual lifetime data

2022 ◽  
Vol 22 (1) ◽  
Author(s):  
James H. McVittie ◽  
David B. Wolfson ◽  
Vittorio Addona ◽  
Zhaoheng Li

AbstractWhen modelling the survival distribution of a disease for which the symptomatic progression of the associated condition is insidious, it is not always clear how to measure the failure/censoring times from some true date of disease onset. In a prevalent cohort study with follow-up, one approach for removing any potential influence from the uncertainty in the measurement of the true onset dates is through the utilization of only the residual lifetimes. As the residual lifetimes are measured from a well-defined screening date (prevalence day) to failure/censoring, these observed time durations are essentially error free. Using residual lifetime data, the nonparametric maximum likelihood estimator (NPMLE) may be used to estimate the underlying survival function. However, the resulting estimator can yield exceptionally wide confidence intervals. Alternatively, while parametric maximum likelihood estimation can yield narrower confidence intervals, it may not be robust to model misspecification. Using only right-censored residual lifetime data, we propose a stacking procedure to overcome the non-robustness of model misspecification; our proposed estimator comprises a linear combination of individual nonparametric/parametric survival function estimators, with optimal stacking weights obtained by minimizing a Brier Score loss function.

2020 ◽  
Vol 22 (Supplement_2) ◽  
pp. ii74-ii74
Author(s):  
Annette Molinaro ◽  
John Wiencke ◽  
Gayathri Warrier ◽  
JiYoon Lee ◽  
Devin Koestler ◽  
...  

Abstract Lineage-specific DNA methylation marks differentiate leukocyte cell types while individual biological aging mechanisms impact other methylation alterations. Human glioma incidence and survival times have been shown to be associated with aberrant immune profiles and have a strong dependency on age. Here we developed a single epigenetic analysis framework to evaluate both immune cell fractions and epigenetic age in peripheral blood. We examined these measures in archived blood from 197 triple-negative glioma patients (TNG; IDH wildtype, 1p19q intact and TERT wildtype) and 312 frequency-matched controls from the SF Bay Area Adult Glioma Study (AGS). Significant differences were observed with TNG cases having lower CD4 and CD8 T cell, natural killer, and B cell fractions, and higher neutrophil fractions than controls. TNG cases were significantly older than controls in two of three epigenetic age estimates; however, there was no difference in epigenetic age acceleration once immune cell proportions were considered. For the TNG cases, we augmented results from several machine learning methods to delineate risk groups of TNG patients with significantly different overall survival. We compared survival models built by recursive partitioning, random forest, and elastic net methods. The final model was chosen by repeated bootstrap sampling via the Brier score loss function and validated in an independent set of 72 IDH-mutant only or TERT-mutant only glioma patients also from the AGS. The final model indicated important interactions between immune cell fractions (including CD4 and CD8 T cells and neutrophils) and treatment, age, and dexamethasone status when adjusted for the main effects of epigenetic age, glioblastoma status, and the neutrophil-to-lymphocyte ratio. The capacity of immunomethylomics to capture diverse, clinically relevant information and the simplicity of its implementation make this a powerful tool for personalized patient evaluation in the neuro-oncology clinic.


Author(s):  
Duha Hamed ◽  
Ahmad Alzaghal

AbstractA new generalized class of Lindley distribution is introduced in this paper. This new class is called the T-Lindley{Y} class of distributions, and it is generated by using the quantile functions of uniform, exponential, Weibull, log-logistic, logistic and Cauchy distributions. The statistical properties including the modes, moments and Shannon’s entropy are discussed. Three new generalized Lindley distributions are investigated in more details. For estimating the unknown parameters, the maximum likelihood estimation has been used and a simulation study was carried out. Lastly, the usefulness of this new proposed class in fitting lifetime data is illustrated using four different data sets. In the application section, the strength of members of the T-Lindley{Y} class in modeling both unimodal as well as bimodal data sets is presented. A member of the T-Lindley{Y} class of distributions outperformed other known distributions in modeling unimodal and bimodal lifetime data sets.


2020 ◽  
Vol 117 (29) ◽  
pp. 16880-16890 ◽  
Author(s):  
Larry Wasserman ◽  
Aaditya Ramdas ◽  
Sivaraman Balakrishnan

We propose a general method for constructing confidence sets and hypothesis tests that have finite-sample guarantees without regularity conditions. We refer to such procedures as “universal.” The method is very simple and is based on a modified version of the usual likelihood-ratio statistic that we call “the split likelihood-ratio test” (split LRT) statistic. The (limiting) null distribution of the classical likelihood-ratio statistic is often intractable when used to test composite null hypotheses in irregular statistical models. Our method is especially appealing for statistical inference in these complex setups. The method we suggest works for any parametric model and also for some nonparametric models, as long as computing a maximum-likelihood estimator (MLE) is feasible under the null. Canonical examples arise in mixture modeling and shape-constrained inference, for which constructing tests and confidence sets has been notoriously difficult. We also develop various extensions of our basic methods. We show that in settings when computing the MLE is hard, for the purpose of constructing valid tests and intervals, it is sufficient to upper bound the maximum likelihood. We investigate some conditions under which our methods yield valid inferences under model misspecification. Further, the split LRT can be used with profile likelihoods to deal with nuisance parameters, and it can also be run sequentially to yield anytime-valid P values and confidence sequences. Finally, when combined with the method of sieves, it can be used to perform model selection with nested model classes.


2018 ◽  
Vol 108 (8) ◽  
pp. 2277-2304 ◽  
Author(s):  
Michal Kolesár ◽  
Christoph Rothe

We consider inference in regression discontinuity designs when the running variable only takes a moderate number of distinct values. In particular, we study the common practice of using confidence intervals (CIs) based on standard errors that are clustered by the running variable as a means to make inference robust to model misspecification (Lee and Card 2008). We derive theoretical results and present simulation and empirical evidence showing that these CIs do not guard against model misspecification, and that they have poor coverage properties. We therefore recommend against using these CIs in practice. We instead propose two alternative CIs with guaranteed coverage properties under easily interpretable restrictions on the conditional expectation function. (JEL C13, C51, J13, J31, J64, J65)


Author(s):  
Muhammad Mansoor ◽  
M. H. Tahir ◽  
Aymaan Alzaatreh ◽  
Gauss M. Cordeiro

A new three-parameter compounded extended-exponential distribution “Poisson Nadarajah–Haghighi” is introduced and studied, which is quite flexible and can be used effectively in modeling survival data. It can have increasing, decreasing, upside-down bathtub and bathtub-shaped failure rate. A comprehensive account of the mathematical properties of the model is presented. We discuss maximum likelihood estimation for complete and censored data. The suitability of the maximum likelihood method to estimate its parameters is assessed by a Monte Carlo simulation study. Four empirical illustrations of the new model are presented to real data and the results are quite satisfactory.


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