scholarly journals Fast virtual histology using X-ray in-line phase tomography: application to the 3D anatomy of maize developing seeds

Plant Methods ◽  
2015 ◽  
Vol 11 (1) ◽  
Author(s):  
David Rousseau ◽  
Thomas Widiez ◽  
Sylvaine Di Tommaso ◽  
Hugo Rositi ◽  
Jerome Adrien ◽  
...  
2018 ◽  
Vol 8 (1) ◽  
Author(s):  
Mark Müller ◽  
Melanie A. Kimm ◽  
Simone Ferstl ◽  
Sebastian Allner ◽  
Klaus Achterhold ◽  
...  
Keyword(s):  

2008 ◽  
Vol 232 (3) ◽  
pp. 476-485 ◽  
Author(s):  
V. CNUDDE ◽  
B. MASSCHAELE ◽  
H.E.V. DE COCK ◽  
K. OLSTAD ◽  
L. VLAMINCK ◽  
...  

2018 ◽  
Vol 8 (1) ◽  
Author(s):  
William Vågberg ◽  
Jonas Persson ◽  
Laszlo Szekely ◽  
Hans M. Hertz

2021 ◽  
Author(s):  
Matthieu Chourrout ◽  
Margaux Roux ◽  
Carlie Boisvert ◽  
Coralie Gislard ◽  
David Legland ◽  
...  

While numerous transgenic mouse strains have been produced to model the formation of amyloid-β (Aβ) plaques in the brain, efficient methods for whole-brain 3D analysis of Aβ deposits are lacking. Moreover, standard immunohistochemistry performed on brain slices precludes any shape analysis of Aβ plaques. The present study shows how in-line (propagation-based) X-ray phase-contrast tomography (XPCT) combined with ethanol-induced brain sample dehydration enables hippocampus-wide detection and morphometric analysis of Aβ plaques. Performed in three distinct Alzheimer mouse strains, the proposed workflow identified differences in signal intensity and 3D shape parameters: 3xTg displayed a different type of Aβ plaques, with a larger volume and area, greater elongation, flatness and mean breadth, and more intense average signal than J20 and APP/PS1. As a label-free non-destructive technique, XPCT can be combined with standard immunohistochemistry. XPCT virtual histology could thus become instrumental in quantifying the 3D spreading and the morphological impact of seeding when studying prion-like properties of Aβ aggregates in animal models of Alzheimer's disease. This is Part II of a series of two articles reporting the value of in-line XPCT for virtual histology of the brain; Part I shows how in-line XPCT enables 3D myelin mapping in the whole rodent brain and in human autopsy brain tissue.


Optica ◽  
2020 ◽  
Vol 7 (9) ◽  
pp. 1221
Author(s):  
Marie-Christine Zdora ◽  
Pierre Thibault ◽  
Willy Kuo ◽  
Vincent Fernandez ◽  
Hans Deyhle ◽  
...  

2020 ◽  
Author(s):  
Pierre Baptiste Thomas Tichit ◽  
Tunhe Zhou ◽  
Hans Martin Kjer ◽  
Vedrana Andersen Dahl ◽  
Anders Bjorholm Dahl ◽  
...  

Understanding the diversity of eyes is crucial to unravel how different animals use vision to interact with their respective environments. To date, comparative studies of eye anatomy are scarce because they often involve time-consuming or inefficient methods. X-ray micro-tomography is a promising high-throughput imaging technique that enables to reconstruct the 3D anatomy of eyes, but powerful tools are needed to perform fast conversions of anatomical reconstructions into functional eye models. We developed a computing method named InSegtCone to automatically segment the crystalline cones in the apposition compound eyes of arthropods. Here, we describe the full auto-segmentation process, showcase its application to three different insect compound eyes and evaluate its performance. The auto-segmentation could successfully label the full individual shapes of 60%-80% of the crystalline cones, and is about as accurate and 250 times faster than manual labelling of the individual cones. We believe that InSegtCone can be an important tool for peer scientists to enable extensive comparisons of the diversity of eyes and vision in arthropods.


Author(s):  
Mariele Romano ◽  
Dr. Alberto Bravin ◽  
Dr. Michael D. Wright ◽  
Laurent Jacques ◽  
Dr. Arttu Miettinen ◽  
...  

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