scholarly journals Helicobacter pylori plasticity region genes are associated with the gastroduodenal diseases manifestation in India

Gut Pathogens ◽  
2016 ◽  
Vol 8 (1) ◽  
Author(s):  
Mou Ganguly ◽  
Sagartirtha Sarkar ◽  
Prachetash Ghosh ◽  
Avijit Sarkar ◽  
Jawed Alam ◽  
...  
2014 ◽  
Vol 70 (a1) ◽  
pp. C823-C823
Author(s):  
Sang Jae Lee ◽  
Ji Young Yoon ◽  
Bong-Jin Lee ◽  
Se Won Suh

Helicobacter pylori infection is the main cause of chronic gastritis, gastric mucosal atrophy, peptic ulcer, and some forms of gastric cancer. There has been considerable interest in strain-specific genes found outside of the cag pathogenicity island, especially genes in the plasticity regions of H. pylori. In H. pylori strain J99, the plasticity region contains 48 genes ranging from jhp0914 to jhp0961. Because little is known about many of these genes in the plasticity region, further studies are necessary to elucidate their roles in H. pylori-associated pathogenesis. The JHP933 protein, encoded by the jhp0933 gene in the plasticity region of H. pylori J99, is one of the prevalently expressed proteins in some gastritis and peptic ulcer patients. However, its structure and function remain unknown. Here, we have determined the crystal structure of JHP933, revealing the first two-domain architecture of DUF1814 family. The N-terminal domain has the nucleotidyltransferase fold and the C-terminal domain is a helix bundle. Structural similarity of JHP933 to known nucleotidyltransferases is very remote, suggesting that it may function as a novel nucleotidyltransferase. It is expected that this study will facilitate functional characterization of JHP933 to obtain an insight into its role in pathogenesis by the H. pylori plasticity region.


2010 ◽  
Vol 138 (5) ◽  
pp. S-245
Author(s):  
Mitsushige Sugimoto ◽  
Tomoyuki Ohno ◽  
Sung Woo Jung ◽  
David Y. Graham ◽  
Yoshio Yamaoka

2011 ◽  
Vol 50 (2) ◽  
pp. 441-448 ◽  
Author(s):  
M. Sugimoto ◽  
M. Watada ◽  
S. W. Jung ◽  
D. Y. Graham ◽  
Y. Yamaoka

Gut and Liver ◽  
2010 ◽  
Vol 4 (3) ◽  
pp. 345-350 ◽  
Author(s):  
Javed Yakoob ◽  
Zaigham Abbas ◽  
Shagufta Naz ◽  
Muhammad Islam ◽  
Shahab Abid ◽  
...  

2000 ◽  
Vol 68 (11) ◽  
pp. 6240-6249 ◽  
Author(s):  
Alessandra Occhialini ◽  
Armelle Marais ◽  
Richard Alm ◽  
Fernando Garcia ◽  
Rafaela Sierra ◽  
...  

ABSTRACT The plasticity region of Helicobacter pylori strain J99 is a large chromosomal segment containing 33 strain-specific open reading frames (ORFs) with characteristics of a pathogenicity island. To study the diversity of the plasticity region, 22 probes corresponding to 20 ORFs inside the plasticity region and two ORFs on its boundaries were hybridized to genomic DNA isolated from clinical strains of H. pylori from patients with gastritis or gastric adenocarcinoma. Highly variable hybridization patterns were observed. The majority of the clinical strains presented a hybridization profile similar to that of J99; thus, these ORFs are not J99 strain specific. No association was found between a particular hybridization pattern and the clinical origin of the strain. Nevertheless, two single ORFs (JHP940 and JHP947) were more likely to be found in gastric cancer strains. They may be new pathogenicity markers. An in vitro expression study of these ORFs was also performed for the J99 strain, under different conditions. Thirteen ORFs were consistently expressed, six were consistently shut off, and three were expressed differentially. Most of the constitutionally expressed genes were located on the 3′ part of the plasticity region. Our results show that the plasticity region, rather than being considered a pathogenicity island per se, should be considered a genomic island, which represents a large fragment of foreign DNA integrated into the genome and not necessarily implicated in the pathogenic capacity of the strain.


2011 ◽  
Vol 80 (1) ◽  
pp. 381-387 ◽  
Author(s):  
Sung Woo Jung ◽  
Mitsushige Sugimoto ◽  
Seiji Shiota ◽  
David Y. Graham ◽  
Yoshio Yamaoka

ABSTRACTThe duodenal ulcer promoting (dupA) gene, located in the plasticity region ofHelicobacter pylori, is associated with duodenal ulcer development.dupAwas predicted to form a type IV secretory system (T4SS) withvirgenes arounddupA(dupAcluster). We investigated the prevalence ofdupAanddupAclusters and clarified associations between thedupAcluster status and clinical outcomes in the U.S. population. In all, 245H. pyloristrains were examined using PCR to evaluate the status ofdupAand the adjacentvirgenes predicted to form T4SS, in addition to the status ofcagpathogenicity island (PAI). The associations betweendupAcluster status and interleukin-8 (IL-8) and IL-12 production were also examined. The presence ofdupAand all adjacentvirgenes were defined as a completedupAcluster. Many variations related to the status ofdupAanddupAcluster genes were identified. ConcurrentH. pyloriinfection and the presence of a completedupAcluster increases duodenal ulcer risk compared toH. pyloriinfection with incompletedupAcluster or without thedupAgene independent on thecagPAI status (adjusted odds ratio, 2.13; 95% confidence interval, 1.13 to 4.03). Gastric mucosal IL-8 levels were also significantly higher in the completedupAcluster group than in other groups (P= 0.01). In conclusion, although the causal relationship between thedupAcluster and duodenal ulcer development is not proved, the presence of a completedupAcluster but notdupAalone, is associated with duodenal ulcer development.


2007 ◽  
Vol 190 (3) ◽  
pp. 1146-1151 ◽  
Author(s):  
Mohammed Rizwan ◽  
Ayesha Alvi ◽  
Niyaz Ahmed

ABSTRACT The plasticity region of the Helicobacter pylori genome comprises strain-specific gene loci. We performed genotyping and functional biology analysis of one such locus (jhp940) that was previously found to be functionally unknown but present in gastric cancer-associated strains from many different countries. We found its geographic prevalence to be independent of cagA presence and disease status. Cloning, expression, and purification of JHP940 revealed a novel, ∼36-kDa protein in a biologically active form which elicited strong and significant levels of tumor necrosis factor alpha and interleukin-8 in human macrophages. Also, JHP940 was able to induce enhanced translocation of the transcription factor NF-κB complex in cultured macrophages. The induction of the proinflammatory cytokines by JHP940, therefore, points to its putative role in chronic gastric inflammation and, possibly, the various other outcomes of H. pylori infection, including gastric cancer.


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