scholarly journals Sequence Analysis of 5.8S rDNA and the Internal Transcribed Spacer Region in Dinoflagellate Heterocapsa Species (Dinophyceae) and Development of Selective PCR Primers for the Bivalve Killer Heterocapsa circularisquama

2003 ◽  
Vol 18 (4) ◽  
pp. 216-222 ◽  
Author(s):  
Takashi Yoshida ◽  
Ryuichi Nakai ◽  
Hisatake Seto ◽  
Ming-Kui Wang ◽  
Mitsunori Iwataki ◽  
...  
Plant Disease ◽  
2012 ◽  
Vol 96 (1) ◽  
pp. 143-143 ◽  
Author(s):  
M. Cadavid ◽  
J. C. Ángel ◽  
J. I. Victoria

Symptoms of sugarcane orange rust were first observed in July 2010 on sugarcane (interspecific hybrid of Saccharum L. species) cv. CC 01-1884 planted in the La Cabaña Sugar Mill, Puerto Tejada, Colombia. Morphological features of uredinial lesions and urediniospores inspected with an optical microscope and scanning electron microscopy were distinct from common rust of sugarcane caused by Puccinia melanocephala Syd. & P. Syd., revealing spores identical morphologically to those described for the fungus P. kuehnii (Kruger) E. Butler, causal agent of sugarcane orange rust (1,3). Uredinial lesions were orange and distinctly lighter in color than pustules of P. melanocephala. Urediniospores were orange to light cinnamon brown, mostly ovoid to pyriform, variable in size (27.3 to 39.2 × 16.7 to 21.2 μm), with pronounced apical wall and moderately echinulate with spines evenly distributed. Paraphyses, telia, and teliospores were not observed. Species-specific PCR primers designed from the internal transcribed spacer (ITS)1, ITS2, and 5.8S rDNA regions of P. melanocephala and P. kuehnii were used to differentiate the two species (2). The primers Pm1-F and Pm1-R amplified a 480-bp product from P. melanocepahala DNA in leaf samples with symptoms of common rust. By contrast, the primers Pk1-F and Pk1-R generated a 527-bp product from presumed P. kuehnii DNA in leaf samples with signs of orange rust, confirming the identity as P. kuehnii. The Centro de Investigación de la Caña de Azúcar de Colombia (Cenicaña) started a survey of different cultivars in nurseries and experimental and commercial fields in the Cauca River Valley and collected leaf samples for additional analyses. Experimental cvs. CC 01-1884, CC 01-1866, and CC 01-1305 were found to be highly susceptible to orange rust and were eliminated from regional trials, whereas commercial cvs. CC 85-92 and CC 84-75, the most widely grown cultivars, were resistant. With the discovery of orange rust of sugarcane in Colombia, Cenicaña has incorporated orange rust resistance in the selection and development of new cultivars. To our knowledge, this is the first report of P. kuehnii on sugarcane in Colombia. Orange rust has also been reported from the United States, Cuba, Mexico, Guatemala, Nicaragua, El Salvador, Costa Rica, Panama, Ecuador, and Brazil. References: (1) J. C. Comstock et al. Plant Dis. 92:175, 2008. (2) N. C. Glynn et al. Plant Pathol. 59:703, 2010. (3) E. V. Virtudazo et al. Mycoscience 42:167, 2001.


1997 ◽  
Vol 75 (5) ◽  
pp. 693-698 ◽  
Author(s):  
Richard C. Hamelin ◽  
Jimmy Rail

Sequences in the 5.8S rDNA and internal transcribed spacer region were obtained for taxa belonging to Gremmeniella spp., and a phylogenetic analysis was carried out using parsimony and distance methods. A set of hypotheses concerning evolutionary relationships between members of that genus was tested. The hypothesis that all members of Gremmeniella abietina var. abietina are closely related was rejected. It appears that the Asian race is quite divergent from the European and North American races, but could be more closely related to G. abietina var. balsamea. The phylogeny was consistent with host specificity: members of G. abietina var. abietina generally do not infect Abies or Picea spp. but the Asian race occurs on Abies sachalinensis in Japan. The hypothesis that host specialization has created divergence within G. abietina var. balsamea was supported by our analysis because the levels of divergence between isolates originating from Picea spp. and Abies spp. were similar to those found between the North American and European races of G. abietina var. abietina. The hypothesis that greater divergence occurred between Gremmeniella abietina and Gremmeniella laricina than between G. abietina var. abietina and G. abietina var. balsamea was not supported. The level of divergence was as large between the two varieties within G. abietina as between the two species G. abietina and G. laricina. These results indicate that similar taxonomic levels should be applied to these three taxa. Key words: scleroderris canker, internal transcribed spacer (ITS).


Plant Disease ◽  
2009 ◽  
Vol 93 (6) ◽  
pp. 615-624 ◽  
Author(s):  
Mana Ohkura ◽  
George S. Abawi ◽  
Christine D. Smart ◽  
Kathie T. Hodge

Vegetable growers in New York, especially those growing table beets, have recently observed that the corn rotation is no longer effective in suppressing diseases caused by Rhizoctonia solani and Rhizoctonia-like fungi. To investigate this problem, 68 isolates of Rhizoctonia solani and Rhizoctonia-like fungi infecting vegetables in New York were isolated, characterized, and their pathogenicity on corn determined. Sequence analysis of the rDNA internal transcribed spacer region inferred 26 isolates to belong to R. solani anastomosis group (AG) 2-2 and 19 isolates to belong to AG 4. Remaining isolates belonged to AG 1, AG 2-1, AG 5, AG 11, Ceratobasidium AG (CAG) 2, CAG 6, and Waitea circinata var. zeae. This is a first report of AG 11 and W. circinata var. zeae recovered from naturally infected vegetables in New York. Pathogenicity tests on corn showed that the majority of isolates are pathogenic on corn, and isolates belonging to AG 2-2, AG 5, and AG 11 exhibited high aggressiveness. These results suggest that certain strains of R. solani and Rhizoctonia-like fungi infecting vegetables in New York have acquired the ability to infect corn. In addition, snap bean was inoculated with seven isolates exhibiting low to high aggressiveness on corn, and a correlation between aggressiveness on corn and snap bean was observed.


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