Morphometry and Phylogeny of the Different Populations of Selaginella tamariscina (P. Beauv.) Spring and S. pulvinata (Hook. & Grev.) Maxim. in Northern Thailand

Abstract “Dok Hin” is the Thai local name for Selaginella species that form rosettes. They commonly distributes in Siberia, Manchuria, southern China, Japan, the Philippines and Thailand. Morphology of Dok Hin is very resemble leading to misidentification. So, exactly number of species of Dok Hin in Thailand and their differences in morphological characteristics is not well understood. Thus, revision of morphological characters and phylogenetic confirmation of the taxonomic identification are needed. This study aims to examine morphological charateristics and phylogenetic patterns in eight populations of the Dok Hin in Northern Thailand. Morphology of Dok Hin from each populations was quantitatively examined using 15 vegetative and 6 reproductive characters meanwhile phylogenetic analyses was explored by DNA barcode ITS2. The results of the phylogenetic analysis revealed the existence of two species of Dok Hin, S. tamariscina and S. pulvinata. Selaginella tamariscina can be distinguished from S. pulvinata by its presence of a pseudotrunk above ground and ridges of dorsal leaves. On the other hand, the results of phylogenetic analysis indicated the differences among populations of S. pulvinata as well. Chiang Mai populations of S. pulvinata was characterized by peculiar set of characters long leaves and leaf apices look like caudate, while the rest of their populations have shorter leaves and leaf apices look like aristate. It indicates that S. pulvinata has genetic and phenotypic divergence among populations. However, additional studies of Dok Hin populations in other parts of Thailand and studies on different genetic markers are necessary to confirm the taxonomic status of S. pulvinata. Keywords: Dok Hin, Morphometric, Phylogeny, Pseudotrunk, Resurrection plant

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Diaporthe sapindicola sp. nov. Causes Leaf Spots of Sapindus mukorossi in China

Plant Disease ◽

10.1094/pdis-04-21-0777-re ◽

2021 ◽

Author(s):

Yuan-Zhi Si ◽

De-Wei Li ◽

Jing Zhong ◽

Lin Huang ◽

Li-Hua Zhu

Keyword(s):

Phylogenetic Analysis ◽

Sequence Data ◽

Southern China ◽

Phylogenetic Analyses ◽

Morphological Characteristics ◽

Leaf Spot Disease ◽

Leaf Spots ◽

Fungal Isolates ◽

Causal Fungus ◽

A New Species

Sapindus mukorossi Gaertn. (Sapindaceae), soapberry is an important biodiesel tree in southern China. In recent years, leaf spot disease on soapberry has been observed frequently in soapberry germplasm repository, Jianning County, Sanming City, Fujian Province, China. The symptoms initially appeared as irregular small yellow spots, and the center of the lesions became dark brown with time. Three fungal isolates from lesions were collected. Koch's postulates were performed, and their pathogenicity was confirmed. Morphologically, α conidia from diseased tissues were 1-celled, hyaline, smooth, clavate or ellipsoidal, biguttulate, and measured 6.2–7.2 × 2.3–2.7 μm. In addition, the three isolates in this study developed three types (α, β, and γ) of conidia on PDA, and their morphological characteristics matched those of Diaporthe. A phylogenetic analysis based on ITS, TEF, TUB, HIS, and CAL sequence data determined that the three isolates are a new species of Diaporthe. Based on both morphological and phylogenetic analyses, the causal fungus, Diaporthe sapindicola sp. nov. was described and illustrated.

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Affinities of four freshwater putative “Chantransia” stages (Rhodophyta) in Southern China from molecular and morphological data

Phytotaxa ◽

10.11646/phytotaxa.441.1.4 ◽

2020 ◽

Vol 441 (1) ◽

pp. 47-59

Author(s):

JIN-FEN HAN ◽

FANG-RU NAN ◽

JIA FENG ◽

JUN-PING LV ◽

QI LIU ◽

...

Keyword(s):

Yunnan Province ◽

Sequence Data ◽

Southern China ◽

Phylogenetic Analyses ◽

Morphological Characteristics ◽

Morphological Characters ◽

Molecular Data ◽

Morphological Data ◽

Phylogenetic Position ◽

Morphological Description

Four putative “Chantransia” isolates were collected from four locations in Hubei and Yunnan Provinces, China. Morphological analyses were conducted on all isolates. Two specimens (HB26 and YN2) fit the morphological description of A. pygmaea, while the other two isolates (YN1 and YN3) varied in morphology, but were within the circumscription of Audouinella hermannii. Due to the fact that the morphological characters of the “Chantransia” stages of order Batrachospermales and the species of genus Audouinella are too similar to be distinguished, a molecular analysis was performed to clarify the phylogenetic position of these four isolates based on rbcL and psbA sequences. Two “pygmaea” specimens collected from Jiugong Mountain, Hubei Province (HB26) and Shimen Gorge, Yunnan Province (YN2), such as S. jiugongshanensis and S. shimenxiaensis, are proposed primarily based on the DNA sequence data generated in this study. The description of these two new species provides more molecular data for phylogenetic analysis of the genus Sheathia. In addition to these newly described species, the results strongly support that those “hermannii” isolates (YN1 and YN3) collected from Yunnan Province were the “Chantransia” of S. arcuata. However, their gametophyte stages have not been found, meaning that critical diagnostic morphological features were unavailable and molecular methods were the only means for ascertaining their phylogenetic position. Considering the extensive application of the rbcL and psbA genes in phylogenetic analyses of freshwater red algae, we recommend using these two genes to identify species when no morphological characteristics are available.

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Diversity unearthed by the estimated molecular phylogeny and ecologically quantitative characteristics of uncultured Ehrlichia bacteria in Haemaphysalis ticks, Japan

Scientific Reports ◽

10.1038/s41598-020-80690-7 ◽

2021 ◽

Vol 11 (1) ◽

Author(s):

Hongru Su ◽

Eri Onoda ◽

Hitoshi Tai ◽

Hiromi Fujita ◽

Shigetoshi Sakabe ◽

...

Keyword(s):

Phylogenetic Analysis ◽

16S Rrna ◽

Core Genome ◽

Phylogenetic Analyses ◽

Taxonomic Status ◽

Housekeeping Genes ◽

Pcr Screening ◽

Taxonomic Profiling ◽

Quantitative Characteristics

AbstractEhrlichia species are obligatory intracellular bacteria transmitted by arthropods, and some of these species cause febrile diseases in humans and livestock. Genome sequencing has only been performed with cultured Ehrlichia species, and the taxonomic status of such ehrlichiae has been estimated by core genome-based phylogenetic analysis. However, many uncultured ehrlichiae exist in nature throughout the world, including Japan. This study aimed to conduct a molecular-based taxonomic and ecological characterization of uncultured Ehrlichia species or genotypes from ticks in Japan. We first surveyed 616 Haemaphysalis ticks by p28-PCR screening and analyzed five additional housekeeping genes (16S rRNA, groEL, gltA, ftsZ, and rpoB) from 11 p28-PCR-positive ticks. Phylogenetic analyses of the respective genes showed similar trees but with some differences. Furthermore, we found that V1 in the V1–V9 regions of Ehrlichia 16S rRNA exhibited the greatest variability. From an ecological viewpoint, the amounts of ehrlichiae in a single tick were found to equal approx. 6.3E+3 to 2.0E+6. Subsequently, core-partial-RGGFR-based phylogenetic analysis based on the concatenated sequences of the five housekeeping loci revealed six Ehrlichia genotypes, which included potentially new Ehrlichia species. Thus, our approach contributes to the taxonomic profiling and ecological quantitative analysis of uncultured or unidentified Ehrlichia species or genotypes worldwide.

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Outbreak of Leaf Spot and Fruit Rot in Florida Strawberry Caused by Neopestalotiopsis spp.

Plant Disease ◽

10.1094/pdis-06-20-1290-re ◽

2021 ◽

pp. PDIS-06-20-1290

Author(s):

Juliana S. Baggio ◽

Bruna B. Forcelini ◽

Nan-Yi Wang ◽

Rafaela G. Ruschel ◽

James C. Mertely ◽

...

Keyword(s):

Internal Transcribed Spacer ◽

Phylogenetic Analyses ◽

Morphological Characteristics ◽

Taxonomic Status ◽

Spore Production ◽

Potato Dextrose Agar ◽

Fruit Rot ◽

Low Genetic Diversity ◽

Pathogenicity Tests ◽

A New Species

Pestalotiopsis-like species have been reported affecting strawberry worldwide. Recently, severe and unprecedented outbreaks have been reported in Florida commercial fields where leaf, fruit, petiole, crown, and root symptoms were observed, and yield was severely affected. The taxonomic status of the fungus is confusing because it has gone through multiple reclassifications over the years. Morphological characteristics, phylogenetic analyses, and pathogenicity tests were evaluated for strawberry isolates recovered from diseased plants in Florida. Phylogenetic analyses derived from the combined internal transcribed spacer, β-tub, and tef1 regions demonstrated that although there was low genetic diversity among the strawberry isolates, there was a clear separation of the isolates in two groups. The first group included isolates recovered over a period of several years, which was identified as Neopestalotiopsis rosae. Most isolates recovered during the recent outbreaks were genetically different and may belong to a new species. On potato dextrose agar, both groups produced white, circular, and cottony colonies. From the bottom, colonies were white to pale yellow for Neopestalotiopsis sp. and pale luteous to orange for N. rosae. Spores for both groups were five-celled with three median versicolored cells. Mycelial growth and spore production were higher for the new Neopestalotiopsis sp. isolates. Isolates from both groups were pathogenic to strawberry roots and crowns. However, the new Neopestalotiopsis sp. proved more aggressive in fruit and leaf inoculation tests, confirming observations from the recent outbreaks in commercial strawberry fields in Florida.

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A new species of Sacada Walker, 1862 from Thailand (Lepidoptera, Pyralidae, Pyralinae)

Evolutionary Systematics ◽

10.3897/evolsyst.4.59893 ◽

2020 ◽

Vol 4 (2) ◽

pp. 71-77

Author(s):

Markku J. Pellinen ◽

Reza Zahiri ◽

Pasi Sihvonen

Keyword(s):

New Species ◽

Dna Barcode ◽

Morphological Characters ◽

Valid Species ◽

Morphological Comparison ◽

Northern Thailand ◽

Lepidoptera Pyralidae ◽

A New Species

A new species of Sacada from northern Thailand is described: S. chaehomensissp. nov. Pellinen & Zahiri (Lepidoptera: Pyralidae, Pyralinae). Morphological characters and DNA barcode data are provided for the new species, with a morphological comparison to S. dzonguensis and S. umtasorensis, and a DNA-barcode comparison to S. ragonotalis and S. albioculalis, respectively. After this addition, the current number of valid species in the genus Sacada is 43.

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The Vietnamese population of Megophrys kuatunensis (Amphibia: Megophryidae) represents a new species of Asian horned frog from Vietnam and southern China

Zootaxa ◽

10.11646/zootaxa.4344.3.3 ◽

2017 ◽

Vol 4344 (3) ◽

pp. 465 ◽

Cited By ~ 10

Author(s):

BENJAMIN TAPLEY ◽

TIMOTHY CUTAJAR ◽

STEPHEN MAHONY ◽

CHUNG THANH NGUYEN ◽

VINH QUANG DAU ◽

...

Keyword(s):

New Species ◽

Southern China ◽

Phylogenetic Analyses ◽

Eastern China ◽

Taxonomic Status ◽

Species Group ◽

Type Specimens ◽

Vietnamese Population ◽

Group A ◽

A New Species

The Asian frog genus Megophrys is a diverse group of morphologically conserved, forest-dwelling frogs. The genus harbours highly localised species diversification and new species continue to be described on a regular basis. We examined the taxonomic status of a population of Megophrys frogs from the Hoang Lien Range in northern Vietnam and southern China previously identified as M. kuatunensis (subgenus Panophrys). Preliminary phylogenetic analyses using a fragment of 16S rDNA places the species in question within the Megophrys (subgenus Panophrys) species group, a primarily Chinese radiation within the genus. On the basis of morphological, molecular and bioacoustic data, we conclude that this population does not represent M. kuatunensis, or any known species in the genus. We herein describe this species of Megophrys as new. Known only from Sa Pa District, Lao Cai Province in Vietnam and Jinping County, Yunnan Province in China, the new species is likely to be threatened by ongoing deforestation in the region. We provide an updated species description of M. kuatunensis based on type specimens, and suggest that M. kuatunensis is likely to be restricted to eastern China.

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The enigmatic groundwater amphipod Awacaris kawasawai revisited: synonymisation of the genus Sternomoera, with molecular phylogenetic analyses of Awacaris and Sternomoera species (Crustacea : Amphipoda : Pontogeneiidae)

Invertebrate Systematics ◽

10.1071/is16037 ◽

2017 ◽

Vol 31 (2) ◽

pp. 125 ◽

Cited By ~ 2

Author(s):

Ko Tomikawa ◽

Masaki Kyono ◽

Keiko Kuribayashi ◽

Takafumi Nakano

Keyword(s):

Phylogenetic Analysis ◽

Phylogenetic Analyses ◽

Taxonomic Status ◽

28S Rrna ◽

Ancestral State ◽

Cryptic Diversity ◽

Japanese Archipelago ◽

Molecular Phylogenetic ◽

The Japanese Archipelago ◽

Kochi Prefecture

Amphipod crustaceans are dominant in subterranean habitats, and members of eight genera are endemic to groundwater environments in the Japanese Archipelago. The taxonomic status of two of these genera remains unclear, because their original descriptions were incomplete. The descriptions of the enigmatic subterranean monotypic genus Awacaris and its type species, A. kawasawai Uéno, 1971, are revisited here. Awacaris kawasawai was originally described based on specimens from a subterranean stream at Himise Cave, Tokushima Prefecture, Shikoku, Japan. Recently, a new population of A. kawasawai was found at Saruta Cave, Kochi Prefecture, Shikoku. Detailed observation of the newly collected specimens reveals the presence of sternal gills, which is the diagnostic character of the pontogeneiid genus Sternomoera, making the validity of Sternomoera open to question. Phylogenetic analyses using nuclear 28S rRNA and mitochondrial cytochrome c oxidase subunit I markers demonstrate that A. kawasawai forms a well-supported clade with the subterranean S. morinoi Tomikawa and Ishimaru, 2014. In addition, phylogenetic analysis reveals cryptic diversity in epigean species of Sternomoera. Ancestral state reconstruction suggests that catadromous Sternomoera species have evolved from freshwater ancestors. Based on our morphological and phylogenetic analysis of Awacaris and Sternomoera species, it is concluded here that Sternomoera should be treated as a subjective junior synonym of Awacaris.

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Amanita submelleialba sp. nov. in section Amanita from northern Thailand

Phytotaxa ◽

10.11646/phytotaxa.513.2.4 ◽

2021 ◽

Vol 513 (2) ◽

pp. 129-140

Author(s):

YUAN S. LIU ◽

JIAN-KUI LIU ◽

PETER E. MORTIMER ◽

SAISAMORN LUMYONG

Keyword(s):

Rna Polymerase Ii ◽

Phylogenetic Analyses ◽

Line Drawing ◽

Elongation Factor ◽

Morphological Characteristics ◽

Nuclear Rdna ◽

Internal Transcribed Spacer Region ◽

Northern Thailand ◽

Extant Species ◽

Distinct Lineage

Amanita submelleialba sp. nov. in section Amanita, is described from northern Thailand based on both multi-gene phylogenetic analysis and morphological evidences. It is characterized by having small to medium-sized basidiomata; a yellow to yellowish pale pileus covering pyramidal to subconical, white to yellow white volval remnants; globose stipe base covered conical, white to yellow white volval remnants; fugacious subapical annulus; and absent clamps. Multi-gene phylogenetic analyses based on partial nuclear rDNA internal transcribed spacer region (ITS), partial nuclear rDNA larger subunit region (nrLSU), RNA polymerase II second largest subunit (RPB2), partial translation elongation factor 1-alpha (TEF1-α) and beta-tubulin gene (TUB) indicated that A. submelleialba clustered together with A. elata and A. mira, but represented as a distinct lineage from other extant species in section Amanita. The detailed morphological characteristics, line-drawing illustration and comparisons with morphologically similar taxa are provided.

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A new cryptic species allied to Plestiodon japonicus (Peters, 1864) (Squamata: Scincidae) from eastern Japan, and diagnoses of the new species and two parapatric congeners based on morphology and DNA barcode

Zootaxa ◽

10.11646/zootaxa.3436.1.1 ◽

2012 ◽

Vol 3436 (1) ◽

pp. 1 ◽

Cited By ~ 8

Author(s):

TAKU OKAMOTO ◽

TSUTOMU HIKIDA

Keyword(s):

New Species ◽

Russian Far East ◽

Far East ◽

Dna Barcode ◽

Morphological Characteristics ◽

Taxonomic Status ◽

The Other ◽

Lizard Species ◽

Diagnostic Features ◽

The Right

A new species of scincid lizard allied to Plestiodon japonicus (Peters, 1864) was described as P. finitimus sp. nov., fromthe eastern part of Honshu and Hokkaido, Japan. A previous DNA study reported the taxonomic status of the easternJapanese populations of Plestiodon as an undescribed species on the basis of their collective genetic distinctness from aparapatric congener P. japonicus sensu strict from the western part of mainland Japan. We present the diagnostic featuresof P. finitimus compared to P. japonicus and P. latiscutatus Hallowell, 1861, the other parapatric species occurring in theIzu Peninsula and Izu Islands of central Japan, on the basis of morphological characteristics and DNA barcode patterns.Both P. finitimus and P. japonicus have a small postnasal and large anterior loreal that contacts the supralabials. In contrast,the Izu Peninsular populations of P. latiscutatus, which had no known diagnostic features relative to the other two species,usually have a large postnasal and small anterior loreal, with the latter separated from the supralabials by the former, ormay otherwise lack a postnasal. In most populations of P. finitimus, the right and left prefrontals are usually isolated fromeach other, whereas they exhibit medial contact in most populations of P. japonicus. Although all the above characters arevariable both within and between populations, 60–90% of the specimens from each locality on mainland Japan werecorrectly identified using a combination of these characters. Based on these characters, the Russian Far East populationof Plestiodon was also identified as P. finitimus. The interspecific sequence differences in the standard DNA barcoderegion (a 658 base pair fragment of the cytochrome c oxidase subunit I gene of mitochondrial DNA) were distinct, andeach of the three species was exclusively clustered in a neighbor-joining tree. The limited hybridization among the threespecies indicated by previous studies suggests that DNA barcodes could provide a reliable key for their correctidentification. The implications for the biogeography and speciation of the three parapatric lizard species are briefly discussed.

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A new species of Heimioporus (Boletaceae) from southern China

Phytotaxa ◽

10.11646/phytotaxa.415.4.2 ◽

2019 ◽

Vol 415 (4) ◽

pp. 179-188

Author(s):

XIANG-NYU CHEN ◽

MING ZHANG ◽

TAI-HUI LI ◽

NIAN-KAI ZENG

Keyword(s):

New Species ◽

Southern China ◽

Phylogenetic Analyses ◽

Elongation Factor ◽

Morphological Characters ◽

Molecular Data ◽

Translation Elongation ◽

Distinct Member ◽

Elongation Factor 1 ◽

A New Species

Heimioporus sinensis, collected from tropical and subtropical areas of China, is introduced as a new species based on both morphological characters and molecular data. The species is characterized by the purplish red to deep magenta pileus, the reticulated stipe, the irregularly reticulate to reticulate-alveolate basidiospores 11.5–13.5 × 8–9.5 μm, and a trichodermal to intricately trichodermal pileipellis. Phylogenetic analyses based on the nuc 28S rDNA D1-D2 domains (28S) and the translation elongation factor 1-α gene (tef1-α) showed that H. sinensis is a distinct member of the genus Heimioporus in the subfamily Xerocomoideae.

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