scholarly journals Disruption of microbial community composition and identification of plant growth promoting microorganisms after exposure of soil to rapeseed-derived glucosinolates

PLoS ONE ◽  
2018 ◽  
Vol 13 (7) ◽  
pp. e0200160 ◽  
Author(s):  
Meike Siebers ◽  
Thomas Rohr ◽  
Marina Ventura ◽  
Vadim Schütz ◽  
Stephan Thies ◽  
...  
Keyword(s):  
Microbial Community ◽  
Plant Growth ◽  
Community Composition ◽  
Microbial Community Composition ◽  
Plant Growth Promoting ◽  
Growth Promoting

scholarly journals New Soil, Old Plants, and Ubiquitous Microbes: Evaluating the Potential of Incipient Basaltic Soil to Support Native Plant Growth and Influence Belowground Soil Microbial Community Composition

2018 ◽  
Author(s):  
Aditi Sengupta ◽  
Priyanka Kushwaha ◽  
Antonia Jim ◽  
Peter A. Troch ◽  
Raina Maier
Keyword(s):  
Microbial Community ◽  
Plant Growth ◽  
Community Composition ◽  
Plant Species ◽  
Soil Microbial Community ◽  
Soil Loss ◽  
Microbial Community Composition ◽  
Parent Material ◽  
Native Plant ◽  
Soil Microbial

The plant-microbe-soil nexus is critical in maintaining biogeochemical balance of the biosphere. However, soil loss and land degradation are occurring at alarmingly high rates, with soil loss exceeding soil formation rates. This necessitates evaluating marginal soils for their capacity to support and sustain plant growth. In a greenhouse study, we evaluated the capacity of marginal incipient basaltic parent material to support native plant growth, and the associated variation in soil microbial community dynamics. Three plant species, native to the Southwestern Arizona-Sonora region were tested with three soil treatments including basaltic parent material, parent material amended with 20% compost, and potting soil. The parent material with and without compost supported germination and growth of all the plant species, though germination was lower than the potting soil. A 16S rRNA amplicon sequencing approach showed Proteobacteria to be the most abundant phyla in both parent material and potting soil, followed by Actinobacteria. Microbial community composition had strong correlations with soil characteristics but not plant attributes within a given soil material. Predictive functional potential capacity of the communities revealed chemoheterotrophy as the most abundant metabolism within the parent material, while photoheterotrophy and anoxygenic photoautotrophy were prevalent in the potting soil. These results show that marginal incipient basaltic soil has the ability to support native plant species growth, and non-linear associations may exist between plant-marginal soil-microbial interactions.

scholarly journals Effect of Pyroligneous Acid on the Microbial Community Composition and Plant Growth-Promoting Bacteria (PGPB) in Soils

Soil Systems ◽  
2022 ◽  
Vol 6 (1) ◽  
pp. 10
Author(s):  
Anithadevi Kenday Sivaram ◽  
Logeshwaran Panneerselvan ◽  
Kannappar Mukunthan ◽  
Mallavarapu Megharaj
Keyword(s):  
Microbial Community ◽  
Plant Growth ◽  
Microbial Diversity ◽  
Growth And Yield ◽  
Rrna Gene ◽  
Plant Growth Promoting Bacteria ◽  
Microbial Composition ◽  
Pyroligneous Acid ◽  
Plant Growth Promoting ◽  
Growth Promoting

Pyroligneous acid (PA) is often used in agriculture as a plant growth and yield enhancer. However, the influence of PA application on soil microorganisms is not often studied. Therefore, in this study, we investigated the effect of PA (0.01–5% w/w in soil) on the microbial diversity in two different soils. At the end of eight weeks of incubation, soil microbial community dynamics were determined by Illumina-MiSeq sequencing of 16S rRNA gene amplicons. The microbial composition differed between the lower (0.01% and 0.1%) and the higher (1% and 5%) concentration in both PA spiked soils. The lower concentration of PA resulted in higher microbial diversity and dehydrogenase activity (DHA) compared to the un-spiked control and the soil spiked with high PA concentrations. Interestingly, PA-induced plant growth-promoting bacterial (PGPB) genera include Bradyrhizobium, Azospirillum, Pseudomonas, Mesorhizobium, Rhizobium, Herbaspiriluum, Acetobacter, Beijerinckia, and Nitrosomonas at lower concentrations. Additionally, the PICRUSt functional analysis revealed the predominance of metabolism as the functional module’s primary component in both soils spiked with 0.01% and 0.1% PA. Overall, the results elucidated that PA application in soil at lower concentrations promoted soil DHA and microbial enrichment, particularly the PGPB genera, and thus have great implications for improving soil health.

scholarly journals Allium cepa L. Inoculation with a Consortium of Plant Growth-Promoting Bacteria: Effects on Plant Growth and Development and Soil Fertility Status and Microbial Community

Proceedings ◽  
2021 ◽  
Vol 66 (1) ◽  
pp. 20
Author(s):  
Marika Pellegrini ◽  
Daniela M. Spera ◽  
Claudia Ercole ◽  
Maddalena del Gallo
Keyword(s):  
Microbial Community ◽  
Plant Growth ◽  
Soil Fertility ◽  
Allium Cepa ◽  
Bacterial Consortium ◽  
Plant Growth Promoting Bacteria ◽  
Allium Cepa L ◽  
Plant Growth Promoting ◽  
Growth Promoting ◽  
Molecular Profiles

The present work was aimed at investigating the effects of a four strains consortium—Azospirillum brasilense, Gluconacetobacter diazotrophicus, Herbaspirillum seropedicae, and Burkholderia ambifaria—on crops of Allium cepa L. and its soil health. The bacterial consortium was inoculated on seeds of two different onion varieties; inoculated seeds and control ones (treated with autoclaved inoculum) were sown in open-field and followed until harvest. Plant growth development parameters, as well as soil physico-chemical and molecular profiles (DNA extraction and 16S community sequencing on the Mi-Seq Illumina platform), were investigated. The results showed a positive influence of bacterial application on plant growth, with increased plant height (+18%), total chlorophylls (+42%), crop yields (+13%), and bulbs dry matter (+3%) than the control. The differences between control and treated experimental conditions were also underlined in the bulb extracts in terms of total phenolic contents (+25%) and antioxidant activities (+20%). Soil fertility and microbial community structure and diversity were also positively affected by the bacterial inoculum. At harvest, the soil with the presence of the bacterial consortium showed an increase of total organic carbon, organic matter, and available P and higher concentrations of nutrients than control. The ecological indexes calculated on the molecular profiles showed that community diversity was positively affected by the bacterial treatment. The present work allowed to remark the effective use of plant growth-promoting bacteria as a valid fertilization strategy to improve yield in productive landscapes, whilst safeguarding soil biodiversity.

scholarly journals Innovative Culturomic Approaches and Predictive Functional Metagenomic Analysis: The Isolation of Hydrocarbonoclastic Bacteria with Plant Growth Promoting Capacity

Water ◽  
2022 ◽  
Vol 14 (2) ◽  
pp. 142
Author(s):  
Ilaria Chicca ◽  
Simone Becarelli ◽  
Giacomo Bernabei ◽  
Giovanna Siracusa ◽  
Simona Di Gregorio
Keyword(s):  
Microbial Community ◽  
Plant Growth ◽  
Carbon Sources ◽  
Acc Deaminase ◽  
Diesel Oil ◽  
Metagenomic Analysis ◽  
Total Petroleum Hydrocarbons ◽  
Hydrocarbonoclastic Bacteria ◽  
Plant Growth Promoting ◽  
Growth Promoting

Innovative culturomic approaches were adopted to isolate hydrocarbonoclastic bacteria capable of degrading diesel oil, bitumen and a selection of polycyclic aromatic hydrocarbons (PAH), e.g., pyrene, anthracene, and dibenzothiophene, from a soil historically contaminated by total petroleum hydrocarbons (TPH) (10,347 ± 98 mg TPH/kg). The culturomic approach focussed on the isolation of saprophytic microorganisms and specialist bacteria utilising the contaminants as sole carbon sources. Bacterial isolates belonging to Pseudomonas, Arthrobacter, Achromobacter, Bacillus, Lysinibacillus, Microbacterium sps. were isolated for their capacity to utilise diesel oil, bitumen, pyrene, anthracene, dibenzothiphene, and their mixture as sole carbon sources. Pseudomonas, Arthrobacter, Achromobacter and Microbacterium sps. showed plant growth promoting activity, producing indole-3-acetic acid and expressing 1-aminocyclopropane-1-carboxylic acid (ACC) deaminase activity. In parallel to the culturomic approach, in the microbial community of interest, bacterial community metabarcoding and predictive functional metagenomic analysis were adopted to confirm the potentiality of the isolates in terms of their functional representativeness. The combination of isolation and molecular approaches for the characterisation of a TPH contaminated soil microbial community is proposed as an instrument for the construction of an artificial hydrocarbonoclastic microbiota for environmental restoration.

Long-term effect of organic amendments, mineral fertilizers and combinations thereof,  on plant yield, soil physic-chemical and microbiological properties

2021 ◽  
Author(s):  
Felix Kurzemann ◽  
Ulrich Plieger ◽  
Maraike Probst ◽  
Heide Spiegel ◽  
Taru Sandén ◽  
...  
Keyword(s):  
Microbial Community ◽  
Plant Growth ◽  
Community Composition ◽  
Farmyard Manure ◽  
Microbial Community Composition ◽  
Mineral Fertilizer ◽  
Microbial Biomass C ◽  
Mineral Fertilizers ◽  
Mineral N ◽  
Physico Chemical

<p>The aim of this study was to investigate the influence of mineral fertilizer, different composts and combinations of compost/fertilizer as soil amendments on a loamy silt Cambisol after a 27-year field trial. Four different composts were used: urban organic waste (OWC), green waste (GC), farmyard manure (MC) and sewage sludge compost (SSC). In addition to plant growth, (physico-)chemical and microbiological changes in soil properties following amendment were analysed: total organic carbon (TOC) and nitrogen (N), soil pH, water holding capacity (WHC), basal respiration (BR), microbial biomass (C<sub>mic</sub>) and microbial community composition. Fertilization promoted plant growth, when SSC or GC in addition with mineral fertilizer were applied compared to control. Concerning the (physico-) chemical properties only minor differences among the treatments were found. Phosphorus concentrations were three times higher in plots receiving SSC and SSC + N  than control or mineral N fertilizer alone and magnesium concentrations in plots treated with SSC were lower compared to soils treated with GC and MC, respectively. The bacterial community exceeded the fungal one in terms of both richness and diversity. Further, bacterial richness, diversity and community composition differed significantly among the treatments, whereas differences in fungal richness, diversity and composition seemed negligible. Our conclusion is that composts produced from various source materials serve as a valuable source for plant nutrients and can partially substitute mineral fertilizers, modulate soil microbial community and increase fertility. This way, they contribute to the mitigation of climate change.</p>

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