scholarly journals Genomewide Association Analysis in Diverse Inbred Mice: Power and Population Structure

Genetics ◽  
2007 ◽  
Vol 176 (1) ◽  
pp. 675-683 ◽  
Author(s):  
Phillip McClurg ◽  
Jeff Janes ◽  
Chunlei Wu ◽  
David L. Delano ◽  
John R. Walker ◽  
...  
Keyword(s):  
Population Structure ◽  
Association Analysis ◽  
Inbred Mice ◽  
Genomewide Association

Population Structure and Genomewide Association Analysis of Resistance to Disease and Insensitivity to Ptr Toxins in Canadian Spring Wheat Using 90K SNP Array

Crop Science ◽  
2017 ◽  
Vol 57 (3) ◽  
pp. 1522-1539 ◽  
Author(s):  
Enid Perez-Lara ◽  
Kassa Semagn ◽  
Van Anh Tran ◽  
Izabela Ciechanowska ◽  
Hua Chen ◽  
...  
Keyword(s):  
Population Structure ◽  
Association Analysis ◽  
Spring Wheat ◽  
Snp Array ◽  
Genomewide Association ◽  
90K Snp Array

A joint genomewide association analysis of pig leg weakness and its related traits in an F2 population and a Sutai population1

2013 ◽  
Vol 91 (9) ◽  
pp. 4060-4068 ◽  
Author(s):  
Y. M. Guo ◽  
X. F. Zhang ◽  
J. Ren ◽  
H. S. Ai ◽  
J. W. Ma ◽  
...  
Keyword(s):  
Association Analysis ◽  
F2 Population ◽  
Leg Weakness ◽  
Genomewide Association

scholarly journals Population structure and association analysis of yield and grain quality traits in hybrid rice primal parental lines

Euphytica ◽  
2016 ◽  
Vol 212 (2) ◽  
pp. 261-273 ◽  
Author(s):  
Yingheng Wang ◽  
Yanmei Zheng ◽  
Qiuhua Cai ◽  
Changjian Liao ◽  
Xiaohui Mao ◽  
...  
Keyword(s):  
Population Structure ◽  
Association Analysis ◽  
Grain Quality ◽  
Hybrid Rice ◽  
Quality Traits ◽  
Parental Lines

Genetic diversity, population structure and association analysis in coconut (Cocos nucifera L.) germplasm using SSR markers

2017 ◽  
Vol 16 (2) ◽  
pp. 156-168 ◽  
Author(s):  
S. Geethanjali ◽  
J. Anitha Rukmani ◽  
D. Rajakumar ◽  
P. Kadirvel ◽  
P.L. Viswanathan
Keyword(s):  
Genetic Diversity ◽  
Population Structure ◽  
Association Analysis ◽  
Gene Diversity ◽  
Cocos Nucifera ◽  
Germplasm Collection ◽  
Yield Component ◽  
Chromosome 1 ◽  
Genetic Structuring ◽  
Model Based Clustering

AbstractA world-wide coconut germplasm collection (79 genotypes) was analyzed for genetic diversity and population structure based on 48 simple sequence repeat (SSR) loci. The genotypes displayed moderately high amount of genetic diversity, which was strongly structured according to geographical origins. Number of SSR alleles ranged from 2 to 7 with an average of 4.1 per locus. Gene diversity (expected heterozygosity) estimates ranged from 0.162 to 0.811 with a mean of 0.573. Polymorphism information content values ranged from 0.149 to 0.785 with an average of 0.522. Hierarchical clustering analysis grouped the genotypes into two major clusters with two sub-groups in each, which corresponded with the geographic origins. The first cluster comprised of ‘Tall’ genotypes originated from Indo-Atlantic and South Asia regions. The second cluster comprised mostly of ‘Dwarf’ genotypes and some Tall genotypes which originated from Indo-Pacific and South-East Asia regions. Model-based clustering by STRUCTURE analysis also supported the presence of clear genetic structuring in the collection with two major populations (K = 2) and four sub-populations (K = 4). The proportion of SSR locus-pairs in linkage disequilibrium was low (2.4%). Association analysis in a subset of 44 genotypes detected a single SSR locus, CnCir73 (chromosome 1) putatively associated with fruit yield component traits, which corresponded with a previously mapped quantitative trait locus in coconut.

scholarly journals Genomewide Association Analysis of Human Narcolepsy and a New Resistance Gene

2006 ◽  
Vol 79 (2) ◽  
pp. 252-263 ◽  
Author(s):  
Minae Kawashima ◽  
Gen Tamiya ◽  
Akira Oka ◽  
Hirohiko Hohjoh ◽  
Takeo Juji ◽  
...  
Keyword(s):  
Resistance Gene ◽  
Association Analysis ◽  
Genomewide Association

scholarly journals Genomewide Association Analysis of Coronary Artery Disease

2007 ◽  
Vol 357 (5) ◽  
pp. 443-453 ◽  
Author(s):  
Nilesh J. Samani ◽  
Jeanette Erdmann ◽  
Alistair S. Hall ◽  
Christian Hengstenberg ◽  
Massimo Mangino ◽  
...  
Keyword(s):  
Coronary Artery Disease ◽  
Coronary Artery ◽  
Association Analysis ◽  
Genomewide Association ◽  
Artery Disease
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