A New Phylogenetic Hypothesis for Cereinae (Cactaceae) Points to a Monophyletic Subtribe

2021 ◽  
Author(s):  
Mariana R. Fantinati ◽  
Patricia Soffiatti ◽  
Alice Calvente
Keyword(s):  
Dry Forest ◽  
Northeastern Brazil ◽  
Southeastern Brazil ◽  
Phylogenetic Hypothesis ◽  
The North ◽  
Phylogenetic Studies ◽  
Molecular Phylogenetic ◽  
Neotropical Dry Forest ◽  
High Support ◽  
Generic Relationships

Cereinae comprises 14 genera distributed in Neotropical dry forest formations such as in the Caatingas of northeastern Brazil or in rocky outcrops in the north of southeastern Brazil. Historically, the taxonomy of the group has been very controversial, especially regarding generic circumscriptions, and phylogenetic relationships within the group are still poorly understood. To investigate the delimitation of thesubtribe and infra-subtribal relationships, we performed a phylogenetic analysis including 50 taxa representing 13 genera using one nuclear (PhyC) and four cpDNA (petL-psbE, trnL-trnT, trnS-trnG, and rpl16) regions. Our results show a monophyletic Cereinae with high support in Bayesian, maximum parsimony, and maximum likelihood analyses based on combined matrices. Although our results expand the knowledge of generic relationships, we emphasize the need for further molecular phylogenetic studies combined with ecological evidence to clarify relationshipsat the more inclusive nodes of the subtribe.

scholarly journals Notes on Some Interesting Sporocarp-Inhabiting Fungi Isolated from Xylarialean Fungi in Japan

Diversity ◽  
2021 ◽  
Vol 13 (11) ◽  
pp. 574
Author(s):  
Wasiatus Sa’diyah ◽  
Akira Hashimoto ◽  
Gen Okada ◽  
Moriya Ohkuma
Keyword(s):  
Dry Forest ◽  
Trichoderma Spp ◽  
Factors Affecting ◽  
Phylogenetic Studies ◽  
Moist Forest ◽  
Mycoparasitic Fungi ◽  
Molecular Phylogenetic ◽  
Ibaraki Prefecture ◽  
Soil Borne Fungi ◽  
Isolated Species

The diversity of sporocarp-inhabiting fungi (SCIF) was examined using six samples of xylarialean fungi from two different forests in Ibaraki Prefecture, Japan: a moist forest in the Sakuragawa area and an urban dry forest in the Tsukuba area. These fungi were enumerated using direct observation and dilution plate methods. We obtained 44 isolates, and careful morphological and molecular phylogenetic studies of these isolates revealed that approximately 30% of the operating taxonomic units were undescribed or cryptic species related to known fungi. Although typical mycoparasitic fungi, such as helotialean fungi and Trichoderma spp., were not isolated, the genera Acremonium, Acrodontium, and Simplicillium were detected. Comparisons of SCIF communities between the two forests suggested that the number of isolated species in the Sakuragawa area was lower than that in the Tsukuba area. Soil-borne fungi, such as Aspergillus, Beauveria, Penicillium, and Talaromyces, or polypores/corticioid mushrooms, are frequently detected in the Tsukuba area. Factors affecting SCIF communities in the two forests are discussed. Some noteworthy fungi are briefly described with notes on taxonomy, ecology, and molecular phylogeny.

Wood anatomy of Cupressus and its relation to geographical distribution

IAWA Journal ◽  
2016 ◽  
Vol 37 (1) ◽  
pp. 48-68 ◽  
Author(s):  
Elena Román-Jordán ◽  
Luis G. Esteban ◽  
Paloma de Palacios ◽  
Francisco G. Fernández
Keyword(s):  
Wood Anatomy ◽  
Central American ◽  
Western Region ◽  
Eastern Region ◽  
Axial Parenchyma ◽  
Chamaecyparis Nootkatensis ◽  
The North ◽  
Phylogenetic Studies ◽  
Molecular Phylogenetic ◽  
Ray Parenchyma Cells

The wood anatomy of 14 species of Cupressus was studied to determine whether there is a pattern of wood anatomical diversity between the species from the North and Central American (western) region and the Eurasian (eastern) region. Xanthocyparis vietnamensis and Chamaecyparis nootkatensis (syn. Xanthocyparis nootkatensis) were also studied to compare their wood anatomy, given their recent inclusion by some authors in Cupressus. The arrangement of the axial parenchyma, morphology of the transverse end walls of the axial parenchyma, presence of ray tracheids, typology of the end walls of the ray parenchyma cells and ray height support to some extent the division of Cupressus into two large groups: the American group (western region) and the Eurasian group (eastern region), as proposed in molecular phylogenetic studies. The wood anatomy of Chamaecyparis nootkatensis shares the presence of ray tracheids and the same ray typology with American Cupressus, and has the same ray height as Eurasian Cupressus. In contrast, Xanthocyparis vietnamensis shares the absence of ray tracheids and the same ray typology with Eurasian Cupressus, and has the same ray height as American Cupressus.

scholarly journals Molecular Phylogeny, Character Evolution, and Biogeography of Hydrangea Section Cornidia, Hydrangeaceae

2021 ◽  
Vol 12 ◽  
Author(s):  
Carolina Granados Mendoza ◽  
Esteban Manuel Martínez Salas ◽  
Paul Goetghebeur ◽  
Stefan Wanke ◽  
Marie-Stéphanie Samain
Keyword(s):  
Flower Color ◽  
Character State ◽  
Ancestral State ◽  
Phylogenetic Hypothesis ◽  
Long Distance ◽  
Character Reconstruction ◽  
Molecular Phylogenetic ◽  
The Usa ◽  
Phylogenetic Framework ◽  
High Support

Background:Hydrangea section Cornidia consists of 26 currently accepted species and a yet undefined number of new species and erroneously synonymized taxa. This clade consists of (sub)tropical lianas occurring from northern Mexico to southern Chile and Argentina, and one species from Southeast Asia. Currently, no molecular phylogenetic hypothesis is available that includes more than a few species of this section. Hence, a resolved and well-sampled molecular phylogenetic hypothesis may help to enforce taxonomic decisions. In this study, we present a phylogenetic framework based on sequences from two low copy nuclear genes from a comprehensive taxon sampling of H. section Cornidia and a selection of outgroups. Our phylogenetic reconstructions prove the non-monophyly of the traditionally recognized subsections Monosegia and Polysegia and their corresponding series, Speciosae and Aphananthae, and Synstyleae and Chorystyleae, respectively. Three morphologically defined species were recovered with high support as monophyletic, namely, Hydrangea panamensis, Hydrangea serratifolia, and Hydrangea tarapotensis. However, statistical support for some shallow nodes did not allow to refute, with high support, the monophyly of several of the herein recognized species for which more than one individual could be analyzed. Based on the obtained phylogenetic framework, we reconstructed the evolution of selected reproductive characters. Hydrangea section Cornidia is the only genus section for which dioecism has been extensively documented. Our character reconstruction of sexual dimorphism shows that dioecism is the ancestral state in this section and that this was reversed to monoecy in Hydrangea seemannii and Hydrangea integrifolia. Character reconstruction for the enlarged marginal flowers recovered their presence as the ancestral character state in H. section Cornidia, although at least three internal lineages independently lost them; thus, losses were reconstructed to be more likely than gain. With respect to the flower color, more species exhibit white than red flowers, and white is reconstructed as the ancestral state. Cornidia also shows an unusual disjunct geographic distribution between Asia and Central Mesoamerica—South America, as it is not present in the USA and Canada. The origin of Cornidia is reconstructed to be the New World with higher probability, and the presence of one species in Asia is likely due to long-distance dispersal.

Phylogenetic analysis of the subtribe Chloraeinae (Orchidaceae): a preliminary approach based on three chloroplast markers

2010 ◽  
Vol 23 (1) ◽  
pp. 38 ◽  
Author(s):  
M. Amelia Chemisquy ◽  
Osvaldo Morrone
Keyword(s):  
Phylogenetic Analyses ◽  
Systematic Position ◽  
South American ◽  
Chloroplast Markers ◽  
Phylogenetic Studies ◽  
Terrestrial Orchids ◽  
Molecular Phylogenetic ◽  
Trnk Intron ◽  
Internal Relationships ◽  
High Support

The systematic position and relationships between some South American terrestrial orchids, such as Bipinnula Comm. ex Juss., Chloraea Lindl., Gavilea Poepp. and Geoblasta Barb. Rodr., is unclear. These four genera have been grouped in the subtribe Chloraeinae by several authors. Previous phylogenetic studies of the group have included only a few species of Chloraea and Gavilea and not of Bipinnula or Geoblasta. Relationships among these four genera were explored and the monophyly of the subtribe Chloraeinae and the genera Chloraea and Gavilea were tested in this contribution. Molecular phylogenetic analyses were conducted, using the following three chloroplast markers: the matK–trnK intron, the atpB–rbcL spacer and the rpoC1 gene. Sequences were analysed under maximum parsimony and Bayesian inference. In all the analyses, Bipinnula, Chloraea, Gavilea and Geoblasta were grouped in a clade with high support, where Bipinnula, Geoblasta and Gavilea were nested inside Chloraea. Consequently, Chloraea was paraphyletic, whereas Gavilea turned out to be monophyletic with high values of support. The other species of tribe Cranichideae appeared as sister groups of the Chloraeinae. A more exhaustive taxonomic sampling is needed to resolve the systematic placement of the subtribe Chloraeinae and the internal relationships between the genera and species that form it.

A Synopsis of Dicliptera (Acanthaceae) in Brazil, with the Description of Two New Species

2020 ◽  
Vol 45 (2) ◽  
pp. 340-348
Author(s):  
James Lucas da Costa-Lima ◽  
Earl Celestino de Oliveira Chagas
Keyword(s):  
New Species ◽  
South America ◽  
The State ◽  
Northeastern Brazil ◽  
Mato Grosso ◽  
The North ◽  
New Synonyms ◽  
Two New Species ◽  
Mato Grosso Do Sul ◽  
A New Species

Abstract—A synopsis of Dicliptera (Acanthaceae) for Brazil is presented. Six species are recognized: Dicliptera ciliaris, D. sexangularis, and D. squarrosa, widely distributed in South America; D. purpurascens, which ranges from the North Region of Brazil (in the state of Acre) to eastern Bolivia; D. gracilirama, a new species from the Atlantic Forest of northeastern Brazil; and D. granchaquenha, a new species recorded in dry and semideciduous forests in Bolivia and western Brazil, in the state of Mato Grosso do Sul. Furthermore, we propose new synonyms and designate lectotypes for eleven names. An identification key to the six accepted Dicliptera species in Brazil is provided.

Transfer of the Kobresia taxa of the flora of Russia and adjacent countries to the genus Carex (Cyperaceae)

2020 ◽  
pp. 125-129
Author(s):  
D. G. Melnikov ◽  
L. I. Krupkina
Keyword(s):  
International Collaboration ◽  
Morphological Characters ◽  
Published Data ◽  
Phylogenetic Studies ◽  
Molecular Phylogenetic ◽  
New Nomenclatural Combinations

Based on the published data of molecular phylogenetic studies of the tribe Cariceae Dumort. genera (Cyperaceae), obtained by an international collaboration (The Global Carex Group, 2016; et al.), and morphological characters of the genera (Kukkonen, 1990; and others), new nomenclatural combinations and replacement names in the genus Carex L. are published for 11 species, one subspecies and two sections previously included in the genus Kobresia Willd.

Systematics and evolution of Lentibulariaceae: III. Utricularia

2018 ◽  
Author(s):  
Richard W. Jobson ◽  
Paulo C. Baleeiro ◽  
Cástor Guisande
Keyword(s):  
Gene Flow ◽  
Species Diversity ◽  
Population Level ◽  
Oceanic Islands ◽  
Vulnerable Species ◽  
Phylogenetic Studies ◽  
Molecular Phylogenetic

Utricularia is a morphologically and ecologically diverse genus currently comprising more than 230 species divided into three subgenera—Polypompholyx, Utricularia, and Bivalvaria—and 35 sections. The genus is distributed worldwide except on the poles and most oceanic islands. The Neotropics has the highest species diversity, followed by Australia. Compared to its sister genera, Utricularia has undergone greater rates of speciation, which are linked to its extreme morphological flexibility that has resulted in the evolution of habitat-specific forms: terrestrial, rheophytic, aquatic, lithophytic, and epiphytic. Molecular phylogenetic studies have resolved relationships for 44% of the species across 80% of the sections. Scant data are available for phylogeography or population-level processes such as gene flow, hybridization, or pollination. Because nearly 90% of the species are endemics, data are urgently needed to determine how to protect vulnerable species and their habitats.

scholarly journals Description and distribution of the larvae of two species of Fistulariidae (Teleostei, Syngnathiformes) in the southeastern Brazil

2007 ◽  
Vol 7 (1) ◽  
pp. 101-104 ◽  
Author(s):  
Fernanda Bernardo Anacreto Gomes de Barros ◽  
Márcia Salustiano de Castro ◽  
Ana Cristina Teixeira Bonecker
Keyword(s):  
Maximum Depth ◽  
Southeastern Brazil ◽  
Brazilian Coast ◽  
The South ◽  
The North ◽  
Single Genus

Fistulariidae contains the single genus, Fistularia, with four species. Two of these species are recorded from Brazil: Fistularia petimba and F. tabacaria. This study describes larvae of these two species of Fistularia, recording their distribution along the southeastern Brazilian coast, which is limited in the north by Real River (12° S) and in the south by São Tomé Cape (22° S). Samples were collected using a bongo net with mesh apertures of 330 and 500 µm during three oceanographic cruises conducted on spring/98 (Central III), winter/99 (Bahia 1) and autumn/00 (Central IV). The net was towed obliquely and the maximum depth was 200 m. Larvae of F. petimba were the most abundant and most widely distributed within the study area, including the seamounts of the Vitória-Trindade Ridge. Larvae of F. tabacaria were recorded only between 14° S and 21° S.

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