scholarly journals Visualizing species richness and site similarity from presence-absence matrices

2021 ◽  
Vol 16 (1) ◽  
pp. 20-27
Author(s):  
Jorge Soberón ◽  
Marlon Cobos ◽  
Claudia Nuñez-Penichet
Keyword(s):  
Species Richness ◽  
Species Composition ◽  
Statistical Significance ◽  
Similar Species ◽  
Equivalent Formulation ◽  
Promising Tool ◽  
Special Cases ◽  
A Cell

Species richness and similarity of biotas among distinct sites are important quantities in biogeography. Indices derived from presence-absence matrices are used to represent these quantities in so-called diversity-range plots.  The most commonly used diversity-range plot, however, has multiple special cases and its interpretation is cumbersome. Here we present an equivalent formulation that is geometrically simpler and has no special cases. In addition, we introduce a method to identify the statistical significance of the dispersion field, an index that represents how similar species composition is in a cell with respect to the whole area. The new diversity-range plot is a promising tool to explore biodiversity and endemism in a region as the values shown in this plot and whether they are statistically significant or not can also be represented in geography.

Influence of the environmental heterogeneity of breeding ponds on anuran assemblages from southeastern Brazil

2009 ◽  
Vol 87 (8) ◽  
pp. 699-707 ◽  
Author(s):  
T. S. Vasconcelos ◽  
T. G. Santos ◽  
D. C. Rossa-Feres ◽  
C.F.B Haddad
Keyword(s):  
Species Richness ◽  
Species Composition ◽  
Beta Diversity ◽  
Environmental Heterogeneity ◽  
Null Model ◽  
Distinct Species ◽  
Southeastern Brazil ◽  
Similar Species ◽  
Anuran Species ◽  
High Beta

We hypothesized that the environmental heterogeneity of breeding ponds influences the species composition and species richness of anuran assemblages from southeastern Brazil, because it provides humidity, shelter, and breeding microhabitats for anuran species, which can result in an increasing number of species in a given habitat. To begin, we tested whether the occurrence of anuran species in each breeding pond is different from a null model of random placement of species in those ponds. We then performed two tests to evaluate which of the five environmental descriptors of breeding ponds influence (1) the species composition and (2) species richness. Species composition of the 38 breeding ponds was correlated with number of edge types, number of plant types along the edges of the breeding ponds, and the hydroperiod. Neither the percentage of vegetation cover on the water’s surface nor the size of the breeding ponds were correlated with species composition. Only the number of edge types was correlated with species richness of breeding ponds. The correlation of three environmental descriptors with species composition and one environmental descriptor with species richness, as well as the high beta diversity among breeding ponds, suggest that the analyses of environmental heterogeneity on species composition was more informative than was the analysis for species richness, because breeding ponds with similar species richness can have distinct species composition among them (high beta diversity).

scholarly journals Floristic composition, structure and soil-vegetation relations in three white-sand soil patches in central Amazonia

2018 ◽  
Vol 48 (1) ◽  
pp. 46-56 ◽  
Author(s):  
Layon Oreste DEMARCHI ◽  
Veridiana Vizoni SCUDELLER ◽  
Livia Carvalho MOURA ◽  
Randolpho Gonçalves DIAS-TERCEIRO ◽  
Aline LOPES ◽  
...  
Keyword(s):  
Species Richness ◽  
Species Composition ◽  
Forest Structure ◽  
Vegetation Type ◽  
Structural Parameters ◽  
Floristic Composition ◽  
Soil Parameters ◽  
Similar Species ◽  
White Sand ◽  
Composition Structure

ABSTRACT The Amazonian white-sand vegetation presents a set of unique features, such as the dominance of a few species, high endemism and low species richness, which differentiate it from other Amazonian forests. Soil parameters have long been recognized as the main drivers of white-sand vegetation (WSV) characteristics. However, how they influence the composition, richness and structure of this vegetation type is still poorly understood. In this study we investigated the variation in floristic composition between patches and the soil-vegetation relations in three central Amazonian WSV patches. We tested whether slight differences in soil properties are linked with differences in floristic composition, species richness and forest structure in adjacent patches. In each patch three plots of 50 x 50 m were sampled (a total of 2.25 ha). Soil samples were collected for each plot. The sampling cutoff for arboreal individuals was DBH ≥ 5 cm. We sampled a total of 3956 individuals belonging to 40 families and 140 species. In each patch only a few species were dominant, but the dominant species varied among patches. Differences among patches were significant, but plots in the same patch tended to have similar species composition. The variable sum of bases (SB) was directly related to species composition, however, species richness and forest structure were not related to soil parameters. Even small variations in soil parameters can change species composition in WSV, although these variations do not necessarily influence the richness and other structural parameters.

scholarly journals Getting the Most From Surveys: How Method Selection and Method Modification Impact Butterfly Survey Data

2021 ◽  
Author(s):  
Katherine C Kral-O’Brien ◽  
Adrienne K Antonsen ◽  
Torre J Hovick ◽  
Ryan F Limb ◽  
Jason P Harmon
Keyword(s):  
Species Richness ◽  
New Species ◽  
Count Data ◽  
Distance Sampling ◽  
Line Transect ◽  
Similar Species ◽  
Method Selection ◽  
M 10 ◽  
Sampling Procedures

Abstract Many methods are used to survey butterfly populations, with line transect and area surveys being prominent. Observers are typically limited to search within 5 or 10 m from the line, while observers are unrestricted in larger specified search regions in area surveys. Although methods differ slightly, the selection is often based on producing defendable data for conservation, maximizing data quality, and minimizing effort. To guide method selection, we compared butterfly surveys using 1) line versus area methods and 2) varying width transects (5 m, 10 m, or unrestricted) using count data from surveys in North Dakota from 2015 to 2018. Between line and area surveys, we detected more individuals with area surveys, even when accounting for effort. However, both methods accumulated new species at similar rates. When comparing transect methodology, we detected nearly 60% more individuals and nine more species when transect width increased from 5 m to unrestricted, despite similar effort across methodology. Overall, we found line surveys slightly less efficient at detecting individuals, but they collected similar species richness to area surveys when accounting for effort. Additionally, line surveys allow the use of unrestricted-width transects with distance sampling procedures, which were more effective at detecting species and individuals while providing a means to correct count data over the same transect length. Methods that reduce effort and accurately depict communities are especially important for conservation when long-term datasets are unavailable.

scholarly journals Disentangling the Ecological Determinants of Species and Functional Trait Diversity in Herb-Layer Plant Communities in European Temperate Forests

Forests ◽  
2021 ◽  
Vol 12 (5) ◽  
pp. 552
Author(s):  
Janez Kermavnar ◽  
Lado Kutnar ◽  
Aleksander Marinšek
Keyword(s):  
Species Richness ◽  
Species Composition ◽  
Plant Communities ◽  
Functional Trait ◽  
Forest Stand ◽  
Relative Importance ◽  
Herb Layer ◽  
Bud Bank ◽  
Tree Species Composition ◽  
Stand Characteristics

Forest herb-layer vegetation responds sensitively to environmental conditions. This paper compares drivers of both taxonomic, i.e., species richness, cover and evenness, and functional herb-layer diversity, i.e., the diversity of clonal, bud bank and leaf-height-seed plant traits. We investigated the dependence of herb-layer diversity on ecological determinants related to soil properties, climatic parameters, forest stand characteristics, and topographic and abiotic and biotic factors associated with forest floor structure. The study was conducted in different forest types in Slovenia, using vegetation and environmental data from 50 monitoring plots (400 m2 each) belonging to the ICP Forests Level I and II network. The main objective was to first identify significant ecological predictors and then quantify their relative importance. Species richness was strongly determined by forest stand characteristics, such as richness of the shrub layer, tree layer shade-casting ability as a proxy for light availability and tree species composition. It showed a clear positive relation to soil pH. Variation in herb-layer cover was also best explained by forest stand characteristics and, to a lesser extent, by structural factors such as moss cover. Species evenness was associated with tree species composition, shrub layer cover and soil pH. Various ecological determinants were decisive for the diversity of below-ground traits, i.e., clonal and bud bank traits. For these two trait groups we observed a substantial climatic signal that was completely absent for taxonomy-based measures of diversity. In contrast, above-ground leaf-height-seed (LHS) traits were driven exclusively by soil reaction and nitrogen availability. In synthesis, local stand characteristics and soil properties acted as the main controlling factors for both species and trait diversity in herb-layer communities across Slovenia, confirming many previous studies. Our findings suggest that the taxonomic and functional facets of herb-layer vegetation are mainly influenced by a similar set of ecological determinants. However, their relative importance varies among individual taxonomy- and functional trait-based diversity measures. Integrating multi-faceted approaches can provide complementary information on patterns of herb-layer diversity in European forest plant communities.

scholarly journals Some Proximal Methods for Solving Mixed Variational Inequalities

2012 ◽  
Vol 2012 ◽  
pp. 1-9
Author(s):  
Muhammad Aslam Noor ◽  
Zhenyu Huang
Keyword(s):  
Variational Inequalities ◽  
Extragradient Method ◽  
Fixed Point Problem ◽  
Point Problem ◽  
Proximal Methods ◽  
Proximal Point ◽  
Equivalent Formulation ◽  
New Methods ◽  
Special Cases ◽  
Mixed Variational Inequalities

It is well known that the mixed variational inequalities are equivalent to the fixed point problem. We use this alternative equivalent formulation to suggest some new proximal point methods for solving the mixed variational inequalities. These new methods include the explicit, the implicit, and the extragradient method as special cases. The convergence analysis of these new methods is considered under some suitable conditions. Our method of constructing these iterative methods is very simple. Results proved in this paper may stimulate further research in this direction.

Species Composition and Species Richness in the Hetao Irrigation Region Drainage Ditches, Northern China

2013 ◽  
Vol 27 (2) ◽  
pp. 167-177 ◽  
Author(s):  
Yang Zhao ◽  
Xin-rong Li ◽  
Zhi-shan Zhang ◽  
Yi-gang Hu ◽  
Pan Wu
Keyword(s):  
Species Richness ◽  
Species Composition ◽  
Northern China ◽  
Drainage Ditches

scholarly journals Composition and diversity of anurans in the Restinga of the Conde municipality, northern coast of the state of Bahia, northeastern Brazil

2016 ◽  
Vol 16 (3) ◽  
Author(s):  
Felipe Augusto Trindade Gondim-Silva ◽  
Alessandra Rodrigues Santos Andrade ◽  
Rafael Oliveira Abreu ◽  
Jamile Santos Nascimento ◽  
Geovane Paixão Corrêa ◽  
...  
Keyword(s):  
Species Richness ◽  
Species Diversity ◽  
Species Composition ◽  
Rainy Season ◽  
Dominant Species ◽  
The State ◽  
Northeastern Brazil ◽  
Freshwater Wetland ◽  
Northern Coast ◽  
Anuran Species

Abstract The Conde municipality is located in the northern coast of the state of Bahia (NC), northeastern Brazil, and is part of the Atlantic Tropical domain. The anuran fauna of the northern portion of the NC is still poorly known if compared to the southern portion. The Restinga is one of the predominant environments of the coastal plains of the NC and it is characterized essentially by presenting sandy soil covered by herbaceous and shrubby vegetation. The objective of this study was to determine the anuran species composition and diversity for the Restinga of the Conde municipality. Sampling was carried out at night by active search over four periods of five consecutive days each, two over the 'main rainy season' and two in a 'lesser rainy season', using 14 sample units (SUs) and five extra sample plots (EPs). We calculated dominance and species diversity using the Berger-Parker and Shannon-Wiener H' indices, respectively. We used accumulation curves and the Jackknife 1 estimator to estimate anuran species richness, considering only the data obtained from the SUs. We recorded 713 anuran specimens distributed within 33 species, 13 genera and five families (Bufonidae, Craugastoridae, Hylidae, Leptodactylidae and Microhylidae). The Hylidae and Leptodactylidae families had the highest species richness. Considering only the SUs (Jackknife 1 estimator in brackets), we recorded 28 species in the study area (33.9 ± 2.3), 13 in Shrubby Vegetation Zones - SVZ (20.8 ± 2.9) and 25 in Freshwater Wetland Zones - FWZ (28.9 ± 1.9). The abundance and species diversity of the FWZ (n = 638 specimens; H'= 2.4) were higher than those recorded for the SVZ (n = 52 specimens; H' = 1.9). The SVZ and FWZ showed distinct dominant species, wherein Pristimantis paulodutrai was the dominant species in SVZ and Scinax fuscomarginatus in FWZ. The Restinga of the Conde municipality stands out as the one with the highest anuran species richness already recorded considering only SVZ and FWZ. Moreover, its anuran species composition represented 55% of the anuran species known for the NC and included taxa common to three different morphoclimatic domains (Tropical Atlantic, Cerrado and Caatinga).

A structural gradient in cerrado vegetation of Brazil: changes in woody plant density, species richness, life history and plant composition

2002 ◽  
Vol 18 (5) ◽  
pp. 775-794 ◽  
Author(s):  
Luci Ferreira Ribeiro ◽  
Marcelo Tabarelli
Keyword(s):  
Life History ◽  
Species Richness ◽  
Species Composition ◽  
Woody Plant ◽  
Plant Density ◽  
Lower Layer ◽  
Sensu Stricto ◽  
Life History Strategies ◽  
Cerrado Vegetation ◽  
Structural Types

Four structural types of cerrado vegetation were examined to test the following hypotheses: (1) there are predictable changes in woody plant density, species richness and life-history strategies from one structural type to another; and (2) plant species composition in the less-rich structural types represent particular and impoverished subsets of those found in the richer ones. The study was conducted at Fazenda Palmares (5°33′S, 42°37′W) Piauí State, Brazil. A 47% decrease in woody plant density between cerradão (forest) and the least-dense type of cerrado sensu stricto (scrub) was associated with a 40% decrease in species richness. The percentage of lower-layer species was reduced by 29% in the least dense type of cerrado sensu stricto compared to cerradão. The proportion of species that flower and fruit during the rainy season was also reduced by one third. Species were not distributed as impoverished subsets along the cerradão–cerrado sensu stricto gradient. It is argued that the reduction in woody plant density and richness is partly due to factors limiting the occurrence of species with particular life-history strategies. The species composition of structural types is affected by the ‘mass effect’ and also by surrounding biotas, which provide species that colonize particular types of cerrado vegetation. Both these processes reduce the likelihood that the species composition in the poorer structural types are simple subsets of those present in the richer types.

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