scholarly journals Standard descriptors and EURISCO development

2010 ◽  
Vol 46 (Special Issue) ◽  
pp. S106-S109
Author(s):  
I. Faberová
Keyword(s):  
Information System ◽  
Genetic Resources ◽  
World Wide ◽  
Plant Genetic Resources ◽  
Ex Situ ◽  
Global Level ◽  
Main Crop ◽  
Level Information ◽  
Standard Set ◽  
International Plant

The paper gives information about both the genesis, and a survey of, the descriptors used for the documentation of plant genetic resources held in <I>ex situ </I>crop collections. The first international documentation standards were developed by the FAO in the 1950s. In 1974, a specific body for plant genetic resources, the IBPGR (International Board for Plant Genetic Resources), was established within the FAO. Since the 1970s, the descriptor lists for main crop collections have been developed, including passport descriptor sets. For the most part, the passport descriptors were common to all crops, with only slight differences. In 1997, the first attempt to create a standard set of descriptors resulted in 24 passport descriptors developed by FAO and IPGRI (International Plant Genetic Resources Institute) working in cooperation. In 2001, the official Multi-Crop Passport Descriptor list (MCPD) was published, including a revised standard set of 28 descriptors. The European <I>ex situ </I>crop catalogue (EURISCO) enlarged the standard set of passport descriptors by adding 6 additional fields in 2002; and another 2 new descriptors were added in November of 2008. A global level of data compatibility is preferred; therefore projects aimed at world-wide utilization and standardization of systems, such as GRINGlobal, and Accession-Level Information System (ALIS), are supported.

Ex-situ conservation of medicinal plant genetic resources managed by national agrobiodiversity center of Korea

Planta Medica ◽  
2012 ◽  
Vol 78 (11) ◽  
Author(s):  
JS Sung ◽  
CW Jeong ◽  
YY Lee ◽  
HS Lee ◽  
YA Jeon ◽  
...  
Keyword(s):  
Medicinal Plant ◽  
Genetic Resources ◽  
Ex Situ Conservation ◽  
Plant Genetic Resources ◽  
Ex Situ

scholarly journals THE PORTUGUESE NATIONAL INVENTORY ON PLANT GENETIC RESOURCES 2018 - DEVELOPMENT AND STATUS

2018 ◽  
Vol 6 (11) ◽  
pp. 109-120
Author(s):  
Filomena Rocha
Keyword(s):  
Genetic Resources ◽  
Plant Genetic Resources ◽  
National Level ◽  
Fruit Trees ◽  
Grain Legumes ◽  
Ex Situ ◽  
Seed Collection ◽  
National Inventory ◽  
Cultivated Species ◽  
Global Platform

Since the 1970s, Portugal has been endeavouring systematic and coordinated efforts for ex situ conservation of plant genetic resources. Portugal maintains in ex situ a large seed collection of cultivated species (cereals, fibres, grain legumes, vegetables), wild species (forages, MAP species), also national clone collections of olive, fruit trees and grapes. In 2011 the Portuguese National Genebank (BPGV) and ISOPLEXIS implemented the GRIN-Global platform, as provides the opportunity to increase data quality, to have long term sustainability for data curation, integrates all collections in one management system optimizing the costs and staff resources. Now, the main objective in Portugal is to implement the Grin Global Platform at the national level to consolidate its National Programme of Plant Genetic Resources (NPPGR) with all national partners directly involved in the conservation of PGR. The main objectives of this communication are: to demonstrate the valuable contribution of the Grin-Global platform to the NPPGR; discuss the development and status of the Portugal’s National Inventory 2018 in EURISCO, analyse the evolution of the amount of passport information in EURISCO from 2015 to 2018; to address the steps that are being taken in Portugal for the Implementation of the Grin-Global Platform at the national level.

Drawing up queries, forms and reports of the information system on plant genetic resources

2020 ◽  
pp. 93-100
Author(s):  
F.Kh. Abdullaev
Keyword(s):  
Information System ◽  
Genetic Resources ◽  
Gene Pool ◽  
Plant Genetic Resources ◽  
Plant Gene ◽  
Exchange Of Information ◽  
The Republic ◽  
Main Component ◽  
National Information ◽  
Research Institute

Aim. To develop the National Plant Gene Pool Information System for the effective exchange of information and targeted use of this information in different research programs as well as for cooperation with regional and international organizations on the basis of intellectual property rights. Results and Discussion. This study was aimed at solving a set of interrelated objectives to compile a computer database of characteristics of the Global Collection of Agricultural Genetic Resources. The platform for this database was harmonized and systematized crop descriptors, which are the main component of the National Information System. As a part of these studies, the PGR Documentation Unit at the National Genebank of the Research Institute of Plant Genetic Resources worked at constructing data queries for presentation in the Information System forms. The tool part of the CAC-DB information system, where one can generate any query at one’s discretion by selecting data using the Query tools, served as a basis for this work. Seventeen types of queries for general use and 4 types of report templates were designed. The National Information System on Plant Genetic Resources, which is being developed at the Research Institute of Plant Genetic Resources, will make it possible to increase the efficiency of its storage, documentation, management and use through the exchange of information and germplasm, and will ensure the transition of genetic and breeding studies to a new technological level, increasing its effectiveness. Conclusions. The developed National Information System is unique and selective. It will concentrate comprehensive information on the plant gene pool of the Republic, as it is specific for Central Asia and the Southern Caucasus, having no analogues in the world.

Key issues facing genebanks in preserving crop genetic diversity ex situ: overview of the range of challenges

2021 ◽  
pp. 139-154
Author(s):  
Paula Bramel ◽  
Keyword(s):  
Genetic Diversity ◽  
Genetic Resources ◽  
Plant Genetic Resources ◽  
Cost Effective ◽  
Ex Situ ◽  
Crop Genetic Diversity ◽  
Ex Situ Collections ◽  
Key Issues ◽  
Market Preference ◽  
The Impact

This chapter reviews the key issues and challenges facing genebanks in preserving crop genetic diversity ex situ. Local crop genetic diversity is challenged with changes in land use, urbanization, land degradation, changes in agricultural practises, availability of improved varieties, changes in market preference, and the impact of climate change. Efforts have been made to secure plant genetic resources ex situ for future use but there are significant issues related to cost effective, efficient, secure, rational, and sustainable long-term ex situ conservation. It begins by addressing issues for the composition of ex situ collections and moves on to discuss issues for routine operations for conservation. The chapter also highlights issues for the use of conserved genetic resources, before concluding with a summary of why the development of sustainable genebank systems is so important.

scholarly journals Safeguarding and using global banana diversity: a holistic approach

2020 ◽  
Vol 1 (1) ◽  
Author(s):  
Ines Van den houwe ◽  
Rachel Chase ◽  
Julie Sardos ◽  
Max Ruas ◽  
Els Kempenaers ◽  
...  
Keyword(s):  
Genetic Resources ◽  
Agronomic Traits ◽  
Plant Genetic Resources ◽  
Holistic Approach ◽  
Global Strategy ◽  
Ex Situ ◽  
Phenotypic Traits ◽  
Research Activities ◽  
Genebank Management

AbstractThe CGIAR genebank International Musa Germplasm Transit Centre (ITC) currently holds 1617 banana accessions from 38 countries as an in vitro collection, backed-up by a cryopreserved collection to safeguard global Musa diversity in perpetuity. The ITC also serves as a vital safety backup and transit centre for national banana genebanks and ensures that germplasm is clean of pests and diseases and freely available under the International Treaty on Plant Genetic Resources for Food and Agriculture. In more than 35 years of activity, the ITC has distributed over 18,000 banana accession samples to researchers and farmers in 113 countries. Ex situ conservation of vegetatively-propagated crops such as banana poses very particular challenges. Maintaining the ITC genebank is labor intense and costly. Efficiencies are sought through research and development of techniques on detecting viruses, the genetic integrity of accessions, and on innovative means of safeguarding banana diversity, such as conserving populations of wild species by seed banking. Although the conservation of global banana diversity is the main objective of the ITC, significant value comes from its holistic approach to better understand and promote its germplasm through numerous research activities and resources. Techniques for morphological and molecular characterization serve to identify and describe the collection, while also determining what gaps should be filled by collecting missions with national partners. The evaluation of desirable agronomic traits inherent in Musa spp. are investigated by a high-throughput phenotyping platform, which helps breeding programs to select cultivars resistant or tolerant to biotic and abiotic stresses. Genomic and bioinformatic studies of several banana wild relatives greatly enhance our understanding of Musa genetic diversity, links to important phenotypic traits and bring new methods for management of the collection. Collectively, these research activities produce enormous amounts of data that require curation and dissemination to the public. The two information systems at the ITC, Musa Genebank Management System and the Musa Germplasm Information System, serve to manage the genebank activities and to make public germplasm-related data for over 30 banana collections worldwide, respectively. By implementing the 10-year workplan set out in the Global Strategy for the Conservation and Use of Musa Genetic Resources, the network MusaNet supports Musa researchers and stakeholders, including the ITC, and most importantly, links to the world’s banana-producing countries via three regional banana networks.

scholarly journals Long-term conservation of potato genetic resources: Methods and status of conservation

2019 ◽  
pp. 717-725
Author(s):  
Jane Muthoni ◽  
Hussein Shimelis ◽  
Rob Melis
Keyword(s):  
Genetic Resources ◽  
Slow Growth ◽  
Plant Genetic Resources ◽  
Ex Situ ◽  
Growth Media ◽  
Medium Term ◽  
Natural Habitats

Plant genetic resources (PGRs) play an important role in agriculture, environment protection, cultural property and trade; they need to be conserved. There are two fundamental approaches for the conservation of PGRs: in situ and ex situ. In situ conservation is the conservation of ecosystems and natural habitats and the maintenance and recovery of viable populations of species in their natural surroundings. Ex situ preservation is the storage of seeds or plant materials under artificial conditions to maintain their long term viability and availability for use. Genebanks employ seed storage, field collections of living plants and in vitro storage (tissue culture or cryopreservation) for ex situ preservation of PGR. Storage of orthodox seeds, which are tolerant to low moisture content and low temperatures at appropriate temperature and humidity, is the most convenient ex situ conservation method. Plants that produce recalcitrant seeds or non-viable seeds are conserved in field genebanks as well as in-vitro in slow growth media for short-to-medium term and cryopreservation in liquid nitrogen at -1960C for long-term periods. Cryopreservation is very expensive and needs trained personnel; this could explain why this method is rarely used for conservation of plant genetic resources in most developing countries. Potato tubers are bulky and highly perishable; the crop is generally conserved as clones either in field genebanks (with annual replanting), in-vitro conservation in slow growth media for short-to-medium term and cryopreservation for long term. Field genebanks are expensive to maintain and the crop is exposed to many dangers; hence, cryopreservation is the only feasible method for long term conservation. However, given the high cost of cryopreservation, long-term conservation of potato genetic resources is poorly developed in most resource-poor countries leading to high rates of genetic erosion. This paper looks into the various methods that that can be applied to conserve potato genetic resources and the status of conservation of potatoes in major genebanks and some countries.

scholarly journals Diversidade genética em acessos de tomateiro heirloom

2015 ◽  
Vol 33 (2) ◽  
pp. 174-180 ◽  
Author(s):  
Thiago O Vargas ◽  
Elisabete P Alves ◽  
Antonio CS Abboud ◽  
Marco AA Leal ◽  
Margarida GF Carmo
Keyword(s):  
Genetic Resources ◽  
Plant Genetic Resources ◽  
Minimum Variance ◽  
International Plant

O objetivo deste trabalho foi avaliar a diversidade genética de acessos de tomates heirloom da coleção do Departamento de Fitotecnia da UFRRJ. A similaridade entre acessos foi determinada por meio de análise de componentes principais seguida de análise de agrupamento, utilizando como variáveis os descritores do IPGRI (International Plant Genetic Resources Institute). No período de maio a setembro de 2004 foram cultivados 22 acessos de tomate, sendo 10 acessos de tomateiro de frutos tipo cereja e 12 de frutos grandes, onde em cada grupo havia acessos heirloom assim como cultivares locais. Os dados oriundos de caracteres quantitativos foram submetidos à análise de componentes principais e seguidos de análise de agrupamento, pelo método 'Ward's minimum variance'. Os dados oriundos de caracteres qualitativos foram transformados em matriz binária, a partir da qual foram calculados os índices de similaridade de Jaccard e submetidos à análise de agrupamento usando o método UPGMA (método da média aritmética não ponderada), que deu origem aos dendogramas de similaridade. Mediante análise dos resultados foi observada a formação de agrupamentos onde os acessos locais se separavam dos genótipos heirloom, indicando variabilidade genética. As análises com os dois tipos de descritores, quantitativos e qualitativos, agruparam os acessos de forma que aqueles de origem local possuíam baixas similaridades com os heirloom importados. Embora os agrupamentos formados pelos dois métodos não sejam idênticos, os dois tipos de análises, em conjunto, são adequados para caracterizações exploratórias em coleções de tomateiro, devido a sua rapidez e praticidade.

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