scholarly journals Comparative Genomics of Multidrug-Resistant Enterococcus spp. isolated from Wastewater Treatment Plants

2019 ◽  
Author(s):  
Haley Sanderson ◽  
Rodrigo Ortega-Polo ◽  
Rahat Zaheer ◽  
Noriko Goji ◽  
Kingsley K. Amoako ◽  
...  
Keyword(s):  
Wastewater Treatment ◽  
Virulence Genes ◽  
Wastewater Treatment Plants ◽  
Multidrug Resistant ◽  
Multi Drug Resistance ◽  
Conventional Activated Sludge ◽  
Enterococcus Spp ◽  
Aerated Filter ◽  
The Impact

Abstract Background Wastewater treatment plants (WWTPs) are considered hotspots for the environmental dissemination of antimicrobial resistance (AMR) determinants. Vancomycin-Resistant Enterococcus (VRE) are candidates for gauging the degree of AMR bacteria in wastewater. E. faecalis and E. faecium are recognized indicators of fecal contamination in water. Genome comparisons of enterococci isolated from a conventional activated sludge (CAS) and biological aerated filter (BAF) WWTPs were conducted. Results VRE isolates, including E. faecalis (n=24), E. faecium (n=11), E. casseliflavus (n=2) and E. gallinarum (n=2), were selected for sequencing based on source, species and AMR phenotype. The pangenomes of E. faecium and E. faecalis were both open. The genomic fraction related to mobilome had a positive correlation with genome size in E. faecium (p < 0.001) and E. faecalis (p < 0.001) and with the number of AMR genes in E. faecium (p = 0.005). The AMR phenotype generally aligned with genotype. Genes conferring vancomycin resistance, including vanA and vanM (E. faecium), vanG (E. faecalis), and vanC (E. casseliflavus/E. gallinarum), were detected in 20 genomes. The most prominent groups of functional AMR genes were efflux pumps and transporters. A minimum of 16, 6, 5 and 3 virulence genes were detected in E. faecium, E. faecalis, E. casseliflavus and E. gallinarum genomes, respectively. Virulence genes were more common in E. faecalis and E. faecium, than E. casseliflavus and E. gallinarum. A number of mobile genetic elements were shared among species. Functional CRISPR/Cas arrays were detected in 13 E. faecalis genomes, with all but one also containing a prophage. The lack of a functional CRISPR/Cas arrays was associated with multi-drug resistance in E. faecium. Phylogenetic analysis demonstrated differential clustering of isolates based on source but not based on WWTP. Genes related to phage and CRISPR/Cas arrays could potentially serve as environmental biomarkers. Conclusions There was no discernable difference between enterococcal genomes from the CAS and BAF WWTPs either before or after treatment. Understanding the impact of WWTPs on the dissemination of AMR in the environment will require knowledge of the mobility and upregulation of genes and the characterization of mobilomes within WWTPs and surrounding environments.

scholarly journals Comparative Genomics of Multidrug-Resistant Enterococcus spp. isolated from Wastewater Treatment Plants

2019 ◽  
Author(s):  
Haley Sanderson ◽  
Rodrigo Ortega-Polo ◽  
Rahat Zaheer ◽  
Noriko Goji ◽  
Kingsley K. Amoako ◽  
...  
Keyword(s):  
Wastewater Treatment ◽  
Comparative Genomics ◽  
Virulence Genes ◽  
Wastewater Treatment Plants ◽  
Mobile Genetic Elements ◽  
Multidrug Resistant ◽  
Multi Drug Resistance ◽  
Genetic Elements ◽  
Conventional Activated Sludge ◽  
Enterococcus Spp

Abstract Background Wastewater treatment plants (WWTPs) are considered hotspots for the environmental dissemination of antimicrobial resistance (AMR) determinants. Vancomycin-Resistant Enterococcus (VRE) are candidates for gauging the degree of AMR bacteria in wastewater. Enterococcus faecalis and Entercoccus faecium are recognized indicators of fecal contamination in water. Comparative genomics of enterococci isolated from conventional activated sludge (CAS) and biological aerated filter (BAF) WWTPs was conducted. Results VRE isolates, including E. faecalis (n=24), E. faecium (n=11), E. casseliflavus (n=2) and E. gallinarum (n=2), were selected for sequencing based on WWTP source, species and AMR phenotype. The pangenomes of E. faecium and E. faecalis were both open. The genomic fraction related to the mobilome was positively correlated with genome size in E. faecium ( p < 0.001) and E. faecalis ( p < 0.001) and with the number of AMR genes in E. faecium ( p = 0.005). Genes conferring vancomycin resistance, including van A and van M ( E. faecium ), van G ( E. faecalis ), and van C ( E. casseliflavus / E. gallinarum ), were detected in 20 genomes. The most prominent functional AMR genes were efflux pumps and transporters. A minimum of 16, 6, 5 and 3 virulence genes were detected in E. faecium , E. faecalis , E. casseliflavus and E. gallinarum, respectively. Virulence genes were more common in E. faecalis and E. faecium , than E. casseliflavus and E. gallinarum . A number of mobile genetic elements were shared among species. Functional CRISPR/Cas arrays were detected in 13 E. faecalis genomes, with all but one also containing a prophage. The lack of a functional CRISPR/Cas arrays was associated with multi-drug resistance in E. faecium . Phylogenetic analysis demonstrated differential clustering of isolates based on source but not based on WWTP. Genes related to phage and CRISPR/Cas arrays could potentially serve as environmental biomarkers. Conclusions There was no discernible difference between enterococcal genomes from the CAS and BAF WWTPs. E. faecalis and E. faecium have smaller genomes and harbor more virulence, AMR, and mobile genetic elements than other Enterococcus spp .

scholarly journals Comparative Genomics of Multidrug-Resistant Enterococcus spp. isolated from Wastewater Treatment Plants

2019 ◽  
Author(s):  
Haley Sanderson ◽  
Rodrigo Ortega-Polo ◽  
Rahat Zaheer ◽  
Noriko Goji ◽  
Kingsley K. Amoako ◽  
...  
Keyword(s):  
Wastewater Treatment ◽  
Comparative Genomics ◽  
Virulence Genes ◽  
Wastewater Treatment Plants ◽  
Mobile Genetic Elements ◽  
Multidrug Resistant ◽  
Multi Drug Resistance ◽  
Genetic Elements ◽  
Conventional Activated Sludge ◽  
Enterococcus Spp

Abstract Background Wastewater treatment plants (WWTPs) are considered hotspots for the environmental dissemination of antimicrobial resistance (AMR) determinants. Vancomycin-Resistant Enterococcus (VRE) are candidates for gauging the degree of AMR bacteria in wastewater. Enterococcus faecalis and Entercoccus faecium are recognized indicators of fecal contamination in water. Comparative genomics of enterococci isolated from conventional activated sludge (CAS) and biological aerated filter (BAF) WWTPs was conducted. Results VRE isolates, including E. faecalis (n=24), E. faecium (n=11), E. casseliflavus (n=2) and E. gallinarum (n=2), were selected for sequencing based on WWTP source, species and AMR phenotype. The pangenomes of E. faecium and E. faecalis were both open. The genomic fraction related to the mobilome was positively correlated with genome size in E. faecium ( p < 0.001) and E. faecalis ( p < 0.001) and with the number of AMR genes in E. faecium ( p = 0.005). Genes conferring vancomycin resistance, including van A and van M ( E. faecium ), van G ( E. faecalis ), and van C ( E. casseliflavus / E. gallinarum ), were detected in 20 genomes. The most prominent functional AMR genes were efflux pumps and transporters. A minimum of 16, 6, 5 and 3 virulence genes were detected in E. faecium , E. faecalis , E. casseliflavus and E. gallinarum, respectively. Virulence genes were more common in E. faecalis and E. faecium , than E. casseliflavus and E. gallinarum . A number of mobile genetic elements were shared among species. Functional CRISPR/Cas arrays were detected in 13 E. faecalis genomes, with all but one also containing a prophage. The lack of a functional CRISPR/Cas arrays was associated with multi-drug resistance in E. faecium . Phylogenetic analysis demonstrated differential clustering of isolates based on source but not based on WWTP. Genes related to phage and CRISPR/Cas arrays could potentially serve as environmental biomarkers. Conclusions There was no discernible difference between enterococcal genomes from the CAS and BAF WWTPs. E. faecalis and E. faecium have smaller genomes and harbor more virulence, AMR, and mobile genetic elements than other Enterococcus spp .

scholarly journals Comparative Genomics of Multidrug-Resistant Enterococcus spp. isolated from Wastewater Treatment Plants

2019 ◽  
Author(s):  
Haley Sanderson ◽  
Rodrigo Ortega-Polo ◽  
Rahat Zaheer ◽  
Noriko Goji ◽  
Kingsley K. Amoako ◽  
...  
Keyword(s):  
Wastewater Treatment ◽  
Comparative Genomics ◽  
Virulence Genes ◽  
Wastewater Treatment Plants ◽  
Mobile Genetic Elements ◽  
Multidrug Resistant ◽  
Multi Drug Resistance ◽  
Genetic Elements ◽  
Conventional Activated Sludge ◽  
Enterococcus Spp

Abstract Background Wastewater treatment plants (WWTPs) are considered hotspots for the environmental dissemination of antimicrobial resistance (AMR) determinants. Vancomycin-Resistant Enterococcus (VRE) are candidates for gauging the degree of AMR bacteria in wastewater. Enterococcus faecalis and Entercoccus faecium are recognized indicators of fecal contamination in water. Comparative genomics of enterococci isolated from conventional activated sludge (CAS) and biological aerated filter (BAF) WWTPs was conducted. Results VRE isolates, including E. faecalis (n=24), E. faecium (n=11), E. casseliflavus (n=2) and E. gallinarum (n=2), were selected for sequencing based on WWTP source, species and AMR phenotype. The pangenomes of E. faecium and E. faecalis were both open. The genomic fraction related to the mobilome was positively correlated with genome size in E. faecium ( p < 0.001) and E. faecalis ( p < 0.001) and with the number of AMR genes in E. faecium ( p = 0.005). Genes conferring vancomycin resistance, including van A and van M ( E. faecium ), van G ( E. faecalis ), and van C ( E. casseliflavus / E. gallinarum ), were detected in 20 genomes. The most prominent functional AMR genes were efflux pumps and transporters. A minimum of 16, 6, 5 and 3 virulence genes were detected in E. faecium , E. faecalis , E. casseliflavus and E. gallinarum, respectively. Virulence genes were more common in E. faecalis and E. faecium , than E. casseliflavus and E. gallinarum . A number of mobile genetic elements were shared among species. Functional CRISPR/Cas arrays were detected in 13 E. faecalis genomes, with all but one also containing a prophage. The lack of a functional CRISPR/Cas arrays was associated with multi-drug resistance in E. faecium . Phylogenetic analysis demonstrated differential clustering of isolates based on source but not based on WWTP. Genes related to phage and CRISPR/Cas arrays could potentially serve as environmental biomarkers. Conclusions There was no discernible difference between enterococcal genomes from the CAS and BAF WWTPs. E. faecalis and E. faecium have smaller genomes and harbor more virulence, AMR, and mobile genetic elements than other Enterococcus spp .

scholarly journals Comparative Genomics of Multidrug-Resistant Enterococcus spp. isolated from Wastewater Treatment Plants

2019 ◽  
Author(s):  
Haley Sanderson ◽  
Rodrigo Ortega-Polo ◽  
Rahat Zaheer ◽  
Noriko Goji ◽  
Kingsley K. Amoako ◽  
...  
Keyword(s):  
Wastewater Treatment ◽  
Comparative Genomics ◽  
Virulence Genes ◽  
Wastewater Treatment Plants ◽  
Mobile Genetic Elements ◽  
Multidrug Resistant ◽  
Multi Drug Resistance ◽  
Genetic Elements ◽  
Conventional Activated Sludge ◽  
Enterococcus Spp

Abstract Background Wastewater treatment plants (WWTPs) are considered hotspots for the environmental dissemination of antimicrobial resistance (AMR) determinants. Vancomycin-Resistant Enterococcus (VRE) are candidates for gauging the degree of AMR bacteria in wastewater. Enterococcus faecalis and Entercoccus faecium are recognized indicators of fecal contamination in water. Comparative genomics of enterococci isolated from conventional activated sludge (CAS) and biological aerated filter (BAF) WWTPs was conducted. Results VRE isolates, including E. faecalis (n=24), E. faecium (n=11), E. casseliflavus (n=2) and E. gallinarum (n=2), were selected for sequencing based on WWTP source, species and AMR phenotype. The pangenomes of E. faecium and E. faecalis were both open. The genomic fraction related to the mobilome was positively correlated with genome size in E. faecium ( p < 0.001) and E. faecalis ( p < 0.001) and with the number of AMR genes in E. faecium ( p = 0.005). Genes conferring vancomycin resistance, including van A and van M ( E. faecium ), van G ( E. faecalis ), and van C ( E. casseliflavus / E. gallinarum ), were detected in 20 genomes. The most prominent functional AMR genes were efflux pumps and transporters. A minimum of 16, 6, 5 and 3 virulence genes were detected in E. faecium , E. faecalis , E. casseliflavus and E. gallinarum, respectively. Virulence genes were more common in E. faecalis and E. faecium , than E. casseliflavus and E. gallinarum . A number of mobile genetic elements were shared among species. Functional CRISPR/Cas arrays were detected in 13 E. faecalis genomes, with all but one also containing a prophage. The lack of a functional CRISPR/Cas arrays was associated with multi-drug resistance in E. faecium . Phylogenetic analysis demonstrated differential clustering of isolates based on source but not based on WWTP. Genes related to phage and CRISPR/Cas arrays could potentially serve as environmental biomarkers. Conclusions There was no discernible difference between enterococcal genomes from the CAS and BAF WWTPs. E. faecalis and E. faecium have smaller genomes and harbor more virulence, AMR, and mobile genetic elements than other Enterococcus spp .

scholarly journals Comparative Genomics of Multidrug-Resistant Enterococcus spp. isolated from Wastewater Treatment Plants

2019 ◽  
Author(s):  
Haley Sanderson ◽  
Rodrigo Ortega-Polo ◽  
Rahat Zaheer ◽  
Noriko Goji ◽  
Kingsley K. Amoako ◽  
...  
Keyword(s):  
Wastewater Treatment ◽  
Comparative Genomics ◽  
Virulence Genes ◽  
Wastewater Treatment Plants ◽  
Mobile Genetic Elements ◽  
Multidrug Resistant ◽  
Multi Drug Resistance ◽  
Genetic Elements ◽  
Conventional Activated Sludge ◽  
Enterococcus Spp

Abstract Background Wastewater treatment plants (WWTPs) are considered hotspots for the environmental dissemination of antimicrobial resistance (AMR) determinants. Vancomycin-Resistant Enterococcus (VRE) are candidates for gauging the degree of AMR bacteria in wastewater. Enterococcus faecalis and Entercoccus faecium are recognized indicators of fecal contamination in water. Comparative genomics of enterococci isolated from conventional activated sludge (CAS) and biological aerated filter (BAF) WWTPs was conducted. Results VRE isolates, including E. faecalis (n=24), E. faecium (n=11), E. casseliflavus (n=2) and E. gallinarum (n=2), were selected for sequencing based on WWTP source, species and AMR phenotype. The pangenomes of E. faecium and E. faecalis were both open. The genomic fraction related to the mobilome was positively correlated with genome size in E. faecium ( p < 0.001) and E. faecalis ( p < 0.001) and with the number of AMR genes in E. faecium ( p = 0.005). Genes conferring vancomycin resistance, including van A and van M ( E. faecium ), van G ( E. faecalis ), and van C ( E. casseliflavus / E. gallinarum ), were detected in 20 genomes. The most prominent functional AMR genes were efflux pumps and transporters. A minimum of 16, 6, 5 and 3 virulence genes were detected in E. faecium , E. faecalis , E. casseliflavus and E. gallinarum, respectively. Virulence genes were more common in E. faecalis and E. faecium , than E. casseliflavus and E. gallinarum . A number of mobile genetic elements were shared among species. Functional CRISPR/Cas arrays were detected in 13 E. faecalis genomes, with all but one also containing a prophage. The lack of a functional CRISPR/Cas arrays was associated with multi-drug resistance in E. faecium . Phylogenetic analysis demonstrated differential clustering of isolates based on source but not based on WWTP. Genes related to phage and CRISPR/Cas arrays could potentially serve as environmental biomarkers. Conclusions There was no discernible difference between enterococcal genomes from the CAS and BAF WWTPs. E. faecalis and E. faecium have smaller genomes and harbor more virulence, AMR, and mobile genetic elements than other Enterococcus spp .

scholarly journals Comparative Genomics of Multidrug-Resistant Enterococcus spp. isolated from Wastewater Treatment Plants

2019 ◽  
Author(s):  
Haley Sanderson ◽  
Rodrigo Ortega-Polo ◽  
Rahat Zaheer ◽  
Noriko Goji ◽  
Kingsley K. Amoako ◽  
...  
Keyword(s):  
Wastewater Treatment ◽  
Comparative Genomics ◽  
Virulence Genes ◽  
Wastewater Treatment Plants ◽  
Mobile Genetic Elements ◽  
Multidrug Resistant ◽  
Multi Drug Resistance ◽  
Genetic Elements ◽  
Conventional Activated Sludge ◽  
Enterococcus Spp

Abstract Background Wastewater treatment plants (WWTPs) are considered hotspots for the environmental dissemination of antimicrobial resistance (AMR) determinants. Vancomycin-Resistant Enterococcus (VRE) are candidates for gauging the degree of AMR bacteria in wastewater. Enterococcus faecalis and Entercoccus faecium are recognized indicators of fecal contamination in water. Comparative genomics of enterococci isolated from conventional activated sludge (CAS) and biological aerated filter (BAF) WWTPs was conducted. Results VRE isolates, including E. faecalis (n=24), E. faecium (n=11), E. casseliflavus (n=2) and E. gallinarum (n=2), were selected for sequencing based on WWTP source, species and AMR phenotype. The pangenomes of E. faecium and E. faecalis were both open. The genomic fraction related to the mobilome was positively correlated with genome size in E. faecium ( p < 0.001) and E. faecalis ( p < 0.001) and with the number of AMR genes in E. faecium ( p = 0.005). Genes conferring vancomycin resistance, including van A and van M ( E. faecium ), van G ( E. faecalis ), and van C ( E. casseliflavus / E. gallinarum ), were detected in 20 genomes. The most prominent functional AMR genes were efflux pumps and transporters. A minimum of 16, 6, 5 and 3 virulence genes were detected in E. faecium , E. faecalis , E. casseliflavus and E. gallinarum, respectively. Virulence genes were more common in E. faecalis and E. faecium , than E. casseliflavus and E. gallinarum . A number of mobile genetic elements were shared among species. Functional CRISPR/Cas arrays were detected in 13 E. faecalis genomes, with all but one also containing a prophage. The lack of a functional CRISPR/Cas arrays was associated with multi-drug resistance in E. faecium . Phylogenetic analysis demonstrated differential clustering of isolates based on source but not based on WWTP. Genes related to phage and CRISPR/Cas arrays could potentially serve as environmental biomarkers. Conclusions There was no discernible difference between enterococcal genomes from the CAS and BAF WWTPs. E. faecalis and E. faecium have smaller genomes and harbor more virulence, AMR, and mobile genetic elements than other Enterococcus spp .

scholarly journals Comparative genomics of multidrug-resistant Enterococcus spp. isolated from wastewater treatment plants

2020 ◽  
Vol 20 (1) ◽  
Author(s):  
Haley Sanderson ◽  
Rodrigo Ortega-Polo ◽  
Rahat Zaheer ◽  
Noriko Goji ◽  
Kingsley K. Amoako ◽  
...  
Keyword(s):  
Wastewater Treatment ◽  
Comparative Genomics ◽  
Wastewater Treatment Plants ◽  
Multidrug Resistant ◽  
Enterococcus Spp

scholarly journals Quantification and Multidrug Resistance Profiles of Vancomycin-Resistant Enterococci Isolated from Two Wastewater Treatment Plants in the Same Municipality

2019 ◽  
Vol 7 (12) ◽  
pp. 626 ◽  
Author(s):  
Haley Sanderson ◽  
Rodrigo Ortega-Polo ◽  
Kevin McDermott ◽  
Geoffrey Hall ◽  
Rahat Zaheer ◽  
...  
Keyword(s):  
Wastewater Treatment ◽  
Antimicrobial Resistance ◽  
Wastewater Treatment Plants ◽  
Resistant Bacteria ◽  
Conventional Activated Sludge ◽  
Treatment Processes ◽  
Surrounding Environment ◽  
Vancomycin Resistant Enterococci ◽  
Vancomycin Resistant ◽  
Aerated Filter

Wastewater treatment plants (WWTPs) are points of control for the environmental dissemination of antimicrobial resistant bacteria. Vancomycin-resistant enterococci (VRE) were used as indicators of antimicrobial resistance (AMR) in two WWTPs (biologically aerated filter (BAF) and conventional activated sludge (CAS)) in the same municipality. The removal and abundance of enterococci and VRE as well as the species and antimicrobial resistance profiles of VRE were assessed. Enterococci and VRE from the primary and final effluents were enumerated. Results were assessed from an ecological context. VRE was not selected for by either WWTP but the BAF system outperformed the CAS system for the removal of enterococci/VRE. Enterococcus faecalis (n = 151), E. faecium (n = 94) and E. casseliflavus/E. gallinarum (n = 59) were the dominant VRE species isolated. A decrease in levofloxacin resistance in enterococci was observed in the BAF WWTP. An increase in nitrofurantoin resistant (p < 0.001) and a decrease in quinupristin/dalfopristin (p = 0.003) and streptomycin (p = 0.022) resistant enterococci were observed in the CAS WWTP, corresponding to a shift of VRE from E. faecalis to E. faecium. Wastewater treatment processes can be managed to limit the dissemination of antimicrobial resistance determinants into the surrounding environment.

Upgrading Wastewater Treatment Plants for Biological Nutrient Removal

1990 ◽  
Vol 22 (7-8) ◽  
pp. 53-60 ◽  
Author(s):  
B. Rabinowitz ◽  
T. D. Vassos ◽  
R. N. Dawson ◽  
W. K. Oldham
Keyword(s):  
Wastewater Treatment ◽  
Nutrient Removal ◽  
Wastewater Treatment Plants ◽  
Design Flow ◽  
Biological Nutrient Removal ◽  
Nitrogen And Phosphorus ◽  
Conventional Activated Sludge ◽  
Recent Developments ◽  
Removal Technology ◽  
Biological Nitrogen

A brief review of recent developments in biological nitrogen and phosphorus removal technology is presented. Guidelines are outlined of how current understanding of these two removal mechanisms can be applied in the upgrading of existing wastewater treatment plants for biological nutrient removal. A case history dealing with the upgrading of the conventional activated sludge process located at Penticton, British Columbia, to a biological nutrient removal facility with a design flow of 18,200 m3/day (4.0 IMGD) is presented as a design example. Process components requiring major modification were the headworks, bioreactors and sludge handling facilities.

Prediction of the O2 Conditions in the Selector

1994 ◽  
Vol 29 (7) ◽  
pp. 229-237 ◽  
Author(s):  
J. Kruit ◽  
F. Boley ◽  
L. J. A. M. Jacobs ◽  
T. W. M. Wouda
Keyword(s):  
Wastewater Treatment ◽  
Pilot Plant ◽  
Wastewater Treatment Plants ◽  
Coarse Filter ◽  
Plant Research ◽  
Influent Characterization

Influent characterization and biosorption experiments were carried out with settled influent of seven wastewater treatment plants to study the influence of O2 in the selector in relation to the success of developing good settling properties of the sludge. In previous years working selectors were installed and/or pilot plant research was carried out at these wastewater treatment plants. Characterization of the influent was done with help of standard COD and BOD measurements with help of a coarse filter. The research has elucidated that the presence of O2 in the selector, at initial sludge loadings of 3.5-6.5 kg BOD/kg MLSS.d, is important for producing good settling properties of the sludge when the sum of readily biodegradable COD and rapidly hydrolysable COD is greater than 40%. When the sum of sludge COD and slow hydrolysable COD is greater than 50% an unaerated selector can be used.

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