scholarly journals Instant diagnosis of gastroscopic biopsy via deep-learned single-shot femtosecond stimulated Raman histology

Author(s):  
Zhijie Liu ◽  
Wei Su ◽  
Jianpeng Ao ◽  
Min Wang ◽  
Qiuli Jiang ◽  
...  

Abstract Gastroscopic biopsy provides the only effective way for gastric cancer diagnosis, but the gold standard histopathology is time-consuming and incompatible with gastroscopy. Conventional stimulated Raman scattering (SRS) microscopy has shown promise in label-free diagnosis on human tissues, yet it requires the tuning of picosecond lasers to achieve chemical specificity at the cost of time and complexity. Here, we demonstrated single-shot femtosecond SRS (femto-SRS) could reach the maximum speed and sensitivity with preserved chemical resolution by integrating with U-Net. Fresh gastroscopic biopsy was imaged in < 60 seconds, revealing essential histoarchitectural hallmarks perfectly agreed with standard histopathology. Moreover, a diagnostic neural network (CNN) was constructed based on images from 279 patients that predicts gastric cancer with accuracy > 96%. We further demonstrated semantic segmentation of intratumor heterogeneity and evaluation of resection margins of endoscopic submucosal dissection (ESD) tissues to simulate rapid and automated intraoperative diagnosis. Our method holds potential for synchronizing gastroscopy and histopathological diagnosis.

PLoS ONE ◽  
2021 ◽  
Vol 16 (7) ◽  
pp. e0254586
Author(s):  
Qianqian Zhang ◽  
Kyung Keun Yun ◽  
Hao Wang ◽  
Sang Won Yoon ◽  
Fake Lu ◽  
...  

In this paper, we propose an automatic cell counting framework for stimulated Raman scattering (SRS) images, which can assist tumor tissue characteristic analysis, cancer diagnosis, and surgery planning processes. SRS microscopy has promoted tumor diagnosis and surgery by mapping lipids and proteins from fresh specimens and conducting a fast disclose of fundamental diagnostic hallmarks of tumors with a high resolution. However, cell counting from label-free SRS images has been challenging due to the limited contrast of cells and tissue, along with the heterogeneity of tissue morphology and biochemical compositions. To this end, a deep learning-based cell counting scheme is proposed by modifying and applying U-Net, an effective medical image semantic segmentation model that uses a small number of training samples. The distance transform and watershed segmentation algorithms are also implemented to yield the cell instance segmentation and cell counting results. By performing cell counting on SRS images of real human brain tumor specimens, promising cell counting results are obtained with > 98% of area under the curve (AUC) and R = 0.97 in terms of cell counting correlation between SRS and histological images with hematoxylin and eosin (H&E) staining. The proposed cell counting scheme illustrates the possibility and potential of performing cell counting automatically in near real time and encourages the study of applying deep learning techniques in biomedical and pathological image analyses.


2019 ◽  
Vol 205 ◽  
pp. 03003
Author(s):  
Francesco Saltarelli ◽  
Vikas Kumar ◽  
Daniele Viola ◽  
Francesco Crisafi ◽  
Fabrizio Preda ◽  
...  

Stimulated Raman scattering spectroscopy enables label-free molecular identification, but its broadband implementation is technically challenging. We experimentally demonstrate a novel approach to multiplex stimulated Raman scattering based on photonic time stretch. A telecom fiber stretches the broadband femtosecond Stokes pulse after the sample to ∼15ns, mapping its spectrum in time. The signal is sampled through a fast oscilloscope, providing single-shot spectra at 80-kHz rate. We demonstrate high sensitivity in detecting the Raman vibrational modes of various samples over the entire high-frequency C-H stretching region. Our results pave the way to high-speed broadband vibrational imaging for materials science and biophotonics.


2019 ◽  
Vol 63 (5) ◽  
pp. 2028-2034 ◽  
Author(s):  
Kristel Sepp ◽  
Martin Lee ◽  
Marie T. J. Bluntzer ◽  
G. Vignir Helgason ◽  
Alison N. Hulme ◽  
...  

2019 ◽  
Vol 116 (32) ◽  
pp. 15842-15848 ◽  
Author(s):  
Yuta Suzuki ◽  
Koya Kobayashi ◽  
Yoshifumi Wakisaka ◽  
Dinghuan Deng ◽  
Shunji Tanaka ◽  
...  

Combining the strength of flow cytometry with fluorescence imaging and digital image analysis, imaging flow cytometry is a powerful tool in diverse fields including cancer biology, immunology, drug discovery, microbiology, and metabolic engineering. It enables measurements and statistical analyses of chemical, structural, and morphological phenotypes of numerous living cells to provide systematic insights into biological processes. However, its utility is constrained by its requirement of fluorescent labeling for phenotyping. Here we present label-free chemical imaging flow cytometry to overcome the issue. It builds on a pulse pair-resolved wavelength-switchable Stokes laser for the fastest-to-date multicolor stimulated Raman scattering (SRS) microscopy of fast-flowing cells on a 3D acoustic focusing microfluidic chip, enabling an unprecedented throughput of up to ∼140 cells/s. To show its broad utility, we use the SRS imaging flow cytometry with the aid of deep learning to study the metabolic heterogeneity of microalgal cells and perform marker-free cancer detection in blood.


2013 ◽  
Vol 125 (49) ◽  
pp. 13280-13284 ◽  
Author(s):  
Ping Wang ◽  
Junjie Li ◽  
Pu Wang ◽  
Chun-Rui Hu ◽  
Delong Zhang ◽  
...  

2010 ◽  
Vol 49 (32) ◽  
pp. 5476-5479 ◽  
Author(s):  
Brian G. Saar ◽  
Yining Zeng ◽  
Christian W. Freudiger ◽  
Yu-San Liu ◽  
Michael E. Himmel ◽  
...  

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