1P-020 Mechanism of Interfacial Activation of a Family I.3 Lipase with Two Lid Structures Revealed by X-ray Crystallography and Molecular Dynamics Simulation(Protein:Structure & Function, The 47th Annual Meeting of the Biophysical Society of Japan)

Annual Meeting ◽

Dynamics Simulation ◽

X Ray ◽

Interfacial Activation ◽

X Ray Crystallography ◽

1P-008 Analysis of protein structural change using Small-angle X-ray scattering and molecular dynamics simulation(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s22_1 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S22

Author(s):

Kenichi Kobiki ◽

Yasunobu Sugimoto

Keyword(s):

Molecular Dynamics ◽

Structural Change ◽

Annual Meeting ◽

Small Angle ◽

Dynamics Simulation ◽

X Ray ◽

X Ray Scattering ◽

Biophysical Society ◽

Ray Scattering

3P243 Analysis of the photoresponse mechanism of the LOV-HTH system using accelerated molecular dynamics simulation(Photobiology: Vision & Photoreception,Poster,The 52th Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s289_3 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S289

Author(s):

Kokubu Tetsuo ◽

Furuta Tadaomi ◽

Sakurai Minoru

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Dynamics Simulation ◽

Accelerated Molecular Dynamics ◽

1P204 Structure and orientation of hydrating water molecules at phospholipid/water interface revealed by molecular dynamics simulation(13A. Biological & Artificial membrane: Structure & Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s174_6 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S174

Author(s):

Suyong Re ◽

Wataru Nishima ◽

Tahei Tahara ◽

Yuji Sugita

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Membrane Structure ◽

Dynamics Simulation ◽

Water Molecules ◽

Water Interface ◽

Structure Property ◽

Artificial Membrane ◽

3M1112 Molecular dynamics simulation for the docking process of myosin against an actin filament(Molecular motor4,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s151_5 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S151-S152

Author(s):

Tadashi Masuda

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Actin Filament ◽

Dynamics Simulation ◽

2PT134 Molecular dynamics simulation study of Lys48-linked diubiquitin in compact conformation(The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s127_5 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S127

Author(s):

Sotaro Fuchigami ◽

Mitsunori Ikeguchi ◽

Akinori Kidera

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Simulation Study ◽

Dynamics Simulation ◽

Biophysical Society ◽

Compact Conformation

1SK-01 A class library for developing multi-copy, multi-scale molecular dynamics simulation programs(1SK High Performance Computational Approaches to Biological Functions,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s8_6 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S8-S9

Author(s):

Tohru Terada ◽

Yasuhiro Matsunaga ◽

Kei Moritsugu ◽

Akinori Kidera

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

High Performance ◽

Dynamics Simulation ◽

Biological Functions ◽

Computational Approaches ◽

Multi Scale ◽

Class Library ◽

3P-041 Multicanonical molecular dynamics simulation of an all-β protein with secondary structure restraints(Protein:Property,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s157_6 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S157-S158

Author(s):

Asahiko Nishimura ◽

Tohru Terada ◽

Kentaro Shimizu

Keyword(s):

Molecular Dynamics ◽

Secondary Structure ◽

Annual Meeting ◽

Dynamics Simulation ◽

Β Protein ◽

Temperature dependence of rotational disorder in a non-standard amino acid from X-ray crystallography and molecular dynamics simulation

Physical Chemistry Chemical Physics ◽

10.1039/b819157c ◽

2009 ◽

Vol 11 (15) ◽

pp. 2601 ◽

Cited By ~ 12

Author(s):

Birger Dittrich ◽

John E. Warren ◽

Francesca P. A. Fabbiani ◽

Wolfgang Morgenroth ◽

Ben Corry

Keyword(s):

Molecular Dynamics ◽

Amino Acid ◽

Temperature Dependence ◽

Dynamics Simulation ◽

X Ray ◽

X Ray Crystallography ◽

Standard Amino Acid

2P152 Molecular dynamics simulation for the neck domain swinging motion of a myosin subfragmnet-1(11. Molecular motor,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s220_2 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S220

Author(s):

Tadashi Masuda

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Molecular Motor ◽

Dynamics Simulation ◽

Biophysical Society ◽

Neck Domain

3P-094 Molecular dynamics simulation of cluster damaged DNA and hOGG1(Nucleic acid binding proteins,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s167_1 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S167

Author(s):

Mariko Higuchi ◽

Miroslav Pinak

Keyword(s):

Molecular Dynamics ◽

Nucleic Acid ◽

Annual Meeting ◽

Binding Proteins ◽

Dynamics Simulation ◽

Nucleic Acid Binding ◽

Biophysical Society ◽

Nucleic Acid Binding Proteins ◽

Damaged Dna