scholarly journals The first steps toward a global pandemic: Reconstructing the demographic history of parasite host switches in its native range

2021 ◽  
Author(s):  
Maéva Techer ◽  
John Roberts ◽  
Reed Cartwright ◽  
Alexander Mikheyev
Keyword(s):  
Gene Flow ◽  
Honey Bee ◽  
Varroa Destructor ◽  
Temporal Dynamics ◽  
Demographic History ◽  
Apis Cerana ◽  
Host Switching ◽  
New Host ◽  
Novel Host ◽  
History Of

Host switching allows parasites to expand their niches. However, successful switching may require suites of adaptations and also may decrease performance on the old host. As a result, reductions in gene flow accompany many host switches, driving speciation. Because host switches tend to be rapid, it is difficult to study their demographic parameters in real-time. Fundamental factors that control subsequent parasite evolution, such as the size of the switching population or the extent of immigration from the original host, remain largely unknown. To shed light on the host switching process, we explored the history of independent switches by two ectoparasitic honey bee mites (Varroa destructor and V. jacobsoni). Both switched to the western honey bee (Apis mellifera) after it was brought into contact with their ancestral host (Apis cerana), ~70 and ~12 years ago, respectively. Varroa destructor subsequently caused worldwide collapses of honey bee populations. Using whole-genome sequencing on 63 mites collected in their native ranges from both the ancestral and novel hosts, we were able to reconstruct the known temporal dynamics of the switch. We further found multiple previously undiscovered mitochondrial lineages on the novel host, along with the genetic equivalent of tens of individuals that were involved in the initial host switch. Despite being greatly reduced, some gene flow remains between mites adapted to different hosts. Our findings suggest that while reproductive isolation may facilitate the fixation of traits beneficial for exploitation of the new host, ongoing genetic exchange may allow genetic amelioration of inbreeding effects.

scholarly journals The first steps toward a global pandemic: Reconstructing the demographic history of parasite host switches in its native range

2021 ◽  
Author(s):  
Maeva Techer ◽  
John Roberts ◽  
Reed Cartwright ◽  
Alexander Mikheyev
Keyword(s):  
Gene Flow ◽  
Honey Bee ◽  
Varroa Destructor ◽  
Temporal Dynamics ◽  
Demographic History ◽  
Apis Cerana ◽  
Host Switching ◽  
New Host ◽  
Global Pandemic ◽  
Novel Host

Abstract Host switching allows parasites to expand their niches. However, successful switching may require suites of adaptations and may decrease performance on the old host. As a result, reductions in gene flow accompany many host switches, driving speciation. Because host switches tend to be rapid, it is difficult to study them in real time and their demographic parameters remain poorly understood. As a result, fundamental factors that control subsequent parasite evolution, such as the size of the switching population or the extent of immigration from the original host, remain largely unknown. To shed light on the host switching process, we explored how host switches occur in independent host shifts by two ectoparasitic honey bee mites (Varroa destructor and V. jacobsoni). Both switched to the western honey bee (Apis mellifera) after it was brought into contact with their ancestral host (Apis cerana), ~70 and ~12 years ago, respectively. Varroa destructor subsequently caused worldwide collapses of honey bee populations. Using whole-genome sequencing on 63 mites collected in their native ranges from both the ancestral and novel hosts, we were able to reconstruct the known temporal dynamics of the switch. We further found multiple previously undiscovered mitochondrial lineages on the novel host, along with genetic equivalent of tens of individuals that were involved in the initial host switch. Despite being greatly reduced, some gene flow remains between mites adapted to different hosts. Our findings suggest that while reproductive isolation may facilitate fixation of traits beneficial for exploitation of the new host, ongoing genetic exchange may allow genetic amelioration of inbreeding effects.

scholarly journals The first steps toward a global pandemic: Reconstructing the demographic history of parasite host switches in its native range

2020 ◽  
Author(s):  
Maeva A. Techer ◽  
John M. K. Roberts ◽  
Reed A. Cartwright ◽  
Alexander S. Mikheyev
Keyword(s):  
Gene Flow ◽  
Honey Bee ◽  
Varroa Destructor ◽  
Temporal Dynamics ◽  
Demographic History ◽  
Apis Cerana ◽  
Host Switching ◽  
New Host ◽  
Global Pandemic ◽  
History Of

Host switching allows parasites to expand their niches. However, successful switching may require suites of adaptations and may decrease performance on the old host. As a result, reductions in gene flow accompany many host switches, driving speciation. Because host switches tend to be rapid, it is difficult to study them in real time and their demographic parameters remain poorly understood. As a result, fundamental factors that control subsequent parasite evolution, such as the size of the switching population or the extent of immigration from the original host, remain largely unknown. To shed light on the host switching process, we explored how host switches occur in independent host shifts by two ectoparasitic honey bee mites (Varroa destructor and V. jacobsoni). Both switched to the western honey bee (Apis mellifera) after it was brought into contact with their ancestral host (Apis cerana), ~70 and ~12 years ago, respectively. Varroa destructor subsequently caused worldwide collapses of honey bee populations. Using whole-genome sequencing on 44 mites collected in their native ranges from both the ancestral and novel hosts, we were able to reconstruct the known temporal dynamics of the switch. We further found that hundreds of haploid genomes were involved in the initial host switch, and, despite being greatly reduced, some gene flow remains between mites adapted to different hosts remains. Our findings suggest that while reproductive isolation may facilitate fixation of traits beneficial for exploitation of the new host, ongoing genetic exchange may allow genetic amelioration of inbreeding effects.

scholarly journals Varroa destructor changes its cuticular hydrocarbons to mimic new hosts

2015 ◽  
Vol 11 (6) ◽  
pp. 20150233 ◽  
Author(s):  
Y. Le Conte ◽  
Z. Y. Huang ◽  
M. Roux ◽  
Z. J. Zeng ◽  
J.-P. Christidès ◽  
...  
Keyword(s):  
Cuticular Hydrocarbons ◽  
Varroa Destructor ◽  
Apis Cerana ◽  
Host Shift ◽  
New Host ◽  
Hygienic Behaviour ◽  
Novel Host ◽  
New Hosts ◽  
Global Threat ◽  
Asian Honeybee

Varroa destructor ( Vd ) is a honeybee ectoparasite. Its original host is the Asian honeybee, Apis cerana , but it has also become a severe, global threat to the European honeybee, Apis mellifera . Previous studies have shown that Varroa can mimic a host's cuticular hydrocarbons (HC), enabling the parasite to escape the hygienic behaviour of the host honeybees. By transferring mites between the two honeybee species, we further demonstrate that Vd is able to mimic the cuticular HC of a novel host species when artificially transferred to this new host. Mites originally from A. cerana are more efficient than mites from A. mellifera in mimicking HC of both A. cerana and A. mellifera . This remarkable adaptability may explain their relatively recent host-shift from A. cerana to A. mellifera .

scholarly journals Analysis of whole-genome re-sequencing data of ducks reveals a diverse demographic history and extensive gene flow between Southeast/South Asian and Chinese populations

2021 ◽  
Vol 53 (1) ◽  
Author(s):  
Fan Jiang ◽  
Ruiyi Lin ◽  
Changyi Xiao ◽  
Tanghui Xie ◽  
Yaoxin Jiang ◽  
...  
Keyword(s):  
Gene Flow ◽  
South Asia ◽  
South Asian ◽  
Demographic History ◽  
Nervous System Development ◽  
Chromosome 1 ◽  
Whole Genome ◽  
Chinese Populations ◽  
Asian Populations ◽  
History Of

Abstract Background The most prolific duck genetic resource in the world is located in Southeast/South Asia but little is known about the domestication and complex histories of these duck populations. Results Based on whole-genome resequencing data of 78 ducks (Anas platyrhynchos) and 31 published whole-genome duck sequences, we detected three geographic distinct genetic groups, including local Chinese, wild, and local Southeast/South Asian populations. We inferred the demographic history of these duck populations with different geographical distributions and found that the Chinese and Southeast/South Asian ducks shared similar demographic features. The Chinese domestic ducks experienced the strongest population bottleneck caused by domestication and the last glacial maximum (LGM) period, whereas the Chinese wild ducks experienced a relatively weak bottleneck caused by domestication only. Furthermore, the bottleneck was more severe in the local Southeast/South Asian populations than in the local Chinese populations, which resulted in a smaller effective population size for the former (7100–11,900). We show that extensive gene flow has occurred between the Southeast/South Asian and Chinese populations, and between the Southeast Asian and South Asian populations. Prolonged gene flow was detected between the Guangxi population from China and its neighboring Southeast/South Asian populations. In addition, based on multiple statistical approaches, we identified a genomic region that included three genes (PNPLA8, THAP5, and DNAJB9) on duck chromosome 1 with a high probability of gene flow between the Guangxi and Southeast/South Asian populations. Finally, we detected strong signatures of selection in genes that are involved in signaling pathways of the nervous system development (e.g., ADCYAP1R1 and PDC) and in genes that are associated with morphological traits such as cell growth (e.g., IGF1R). Conclusions Our findings provide valuable information for a better understanding of the domestication and demographic history of the duck, and of the gene flow between local duck populations from Southeast/South Asia and China.

scholarly journals Population structure and demographic history of the chukar partridge Alectoris chukar in China

2013 ◽  
Vol 59 (4) ◽  
pp. 458-474 ◽  
Author(s):  
Sen Song ◽  
Shijie Bao ◽  
Ying Wang ◽  
Xinkang Bao ◽  
Bei An ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Gene Flow ◽  
North America ◽  
Demographic History ◽  
Population Expansion ◽  
Northwest China ◽  
Population History ◽  
Extant Species ◽  
History Of ◽  
Chukar Partridge

Abstract Pleistocene climate fluctuations have shaped the patterns of genetic diversity observed in extant species. Although the effects of recent glacial cycles on genetic diversity have been well studied on species in Europe and North America, genetic legacy of species in the Pleistocene in north and northwest of China where glaciations was not synchronous with the ice sheet development in the Northern Hemisphere or or had little or no ice cover during the glaciations’ period, remains poorly understood. Here we used phylogeographic methods to investigate the genetic structure and population history of the chukar partridge Alec-toris chukar in north and northwest China. A 1,152 – 1,154 bp portion of the mtDNA CR were sequenced for all 279 specimens and a total number of 91 haplotypes were defined by 113 variable sites. High levels of gene flow were found and gene flow estimates were greater than 1 for most population pairs in our study. The AMOVA analysis showed that 81% and 16% of the total genetic variability was found within populations and among populations within groups, respectively. The demographic history of chukar was examined using neutrality tests and mismatch distribution analyses and results indicated Late Pleistocene population expansion. Results revealed that most populations of chukar experienced population expansion during 0.027 ? 0.06 Ma. These results are at odds with the results found in Europe and North America, where population expansions occurred after Last Glacial Maximum (LGM, 0.023 to 0.018 Ma). Our results are not consistent with the results from avian species of Tibetan Plateau, either, where species experienced population expansion following the retreat of the extensive glaciation period (0.5 to 0.175 Ma).

scholarly journals Diabolical survival in Death Valley: recent pupfish colonization, gene flow and genetic assimilation in the smallest species range on earth

2016 ◽  
Vol 283 (1823) ◽  
pp. 20152334 ◽  
Author(s):  
Christopher H. Martin ◽  
Jacob E. Crawford ◽  
Bruce J. Turner ◽  
Lee H. Simons
Keyword(s):  
Gene Flow ◽  
Demographic History ◽  
Genetic Assimilation ◽  
Death Valley ◽  
Court Case ◽  
Devils Hole ◽  
Supreme Court Case ◽  
History Of ◽  
New Perspective ◽  
Outstanding Question

One of the most endangered vertebrates, the Devils Hole pupfish Cyprinodon diabolis , survives in a nearly impossible environment: a narrow subterranean fissure in the hottest desert on earth, Death Valley. This species became a conservation icon after a landmark 1976 US Supreme Court case affirming federal groundwater rights to its unique habitat. However, one outstanding question about this species remains unresolved: how long has diabolis persisted in this hellish environment? We used next-generation sequencing of over 13 000 loci to infer the demographic history of pupfishes in Death Valley. Instead of relicts isolated 2–3 Myr ago throughout repeated flooding of the entire region by inland seas as currently believed, we present evidence for frequent gene flow among Death Valley pupfish species and divergence after the most recent flooding 13 kyr ago. We estimate that Devils Hole was colonized by pupfish between 105 and 830 years ago, followed by genetic assimilation of pelvic fin loss and recent gene flow into neighbouring spring systems. Our results provide a new perspective on an iconic endangered species using the latest population genomic methods and support an emerging consensus that timescales for speciation are overestimated in many groups of rapidly evolving species.

scholarly journals Biology and Management of Varroa destructor (Mesostigmata: Varroidae) in Apis mellifera (Hymenoptera: Apidae) Colonies

2020 ◽  
Vol 11 (1) ◽  
Author(s):  
Morgan A Roth ◽  
James M Wilson ◽  
Keith R Tignor ◽  
Aaron D Gross
Keyword(s):  
Apis Mellifera ◽  
Honey Bee ◽  
Varroa Destructor ◽  
Sampling Methods ◽  
Apis Cerana ◽  
Varroa Mite ◽  
Resistance Development ◽  
Deformed Wing Virus ◽  
The Past ◽  
Asian Honey Bee

Abstract Varroa mite (Varroa destructor Anderson and Trueman) infestation of European honey bee (Apis mellifera L.) colonies has been a growing cause of international concern among beekeepers throughout the last 50 yr. Varroa destructor spread from the Asian honey bee (Apis cerana Fabricius [Hymenoptera: Apidae]) to A. mellifera populations in Europe in the 1970s, and subsequently traveled to the Americas. In addition to causing damage through feeding upon lipids of larval and adult bees, V. destructor also facilitates the spread of several viruses, with deformed wing virus being most prevalent. Several sampling methods have been developed for estimating infestation levels of A. mellifera colonies, and acaricide treatments have been implemented. However, overuse of synthetic acaricides in the past has led to widespread acaricide resistant V. destructor populations. The application of Integrated Pest Management (IPM) techniques is a more recent development in V. destructor control and is suggested to be more effective than only using pesticides, thereby posing fewer threats to A. mellifera colonies. When using IPM methods, informed management decisions are made based upon sampling, and cultural and mechanical controls are implemented prior to use of acaricide treatments. If acaricides are deemed necessary, they are rotated based on their mode of action, thus avoiding V. destructor resistance development.

scholarly journals Advances and perspectives in selecting resistance traits against the parasitic mite Varroa destructor in honey bees

2020 ◽  
Vol 52 (1) ◽  
Author(s):  
Matthieu Guichard ◽  
Vincent Dietemann ◽  
Markus Neuditschko ◽  
Benjamin Dainat
Keyword(s):  
Honey Bee ◽  
Environmental Effects ◽  
Honey Bees ◽  
Varroa Destructor ◽  
Selection Strategy ◽  
Pollination Services ◽  
Colony Losses ◽  
New Host ◽  
Parasitic Mite ◽  
Resistance Traits

Abstract Background In spite of the implementation of control strategies in honey bee (Apis mellifera) keeping, the invasive parasitic mite Varroa destructor remains one of the main causes of colony losses in numerous countries. Therefore, this parasite represents a serious threat to beekeeping and agro-ecosystems that benefit from the pollination services provided by honey bees. To maintain their stocks, beekeepers have to treat their colonies with acaricides every year. Selecting lineages that are resistant to infestations is deemed to be a more sustainable approach. Review Over the last three decades, numerous selection programs have been initiated to improve the host–parasite relationship and to support honey bee survival in the presence of the parasite without the need for acaricide treatments. Although resistance traits have been included in the selection strategy of honey bees, it has not been possible to globally solve the V. destructor problem. In this study, we review the literature on the reasons that have potentially limited the success of such selection programs. We compile the available information to assess the relevance of selected traits and the potential environmental effects that distort trait expression and colony survival. Limitations to the implementation of these traits in the field are also discussed. Conclusions Improving our knowledge of the mechanisms underlying resistance to V. destructor to increase trait relevance, optimizing selection programs to reduce environmental effects, and communicating selection outcomes are all crucial to efforts aiming at establishing a balanced relationship between the invasive parasite and its new host.

scholarly journals Diversity and Global Distribution of Viruses of the Western Honey Bee, Apis mellifera

Insects ◽  
2020 ◽  
Vol 11 (4) ◽  
pp. 239 ◽  
Author(s):  
Alexis Beaurepaire ◽  
Niels Piot ◽  
Vincent Doublet ◽  
Karina Antunez ◽  
Ewan Campbell ◽  
...  
Keyword(s):  
Apis Mellifera ◽  
Honey Bee ◽  
High Throughput Sequencing ◽  
Temporal Dynamics ◽  
Pollination Services ◽  
Colony Losses ◽  
New Host ◽  
Deformed Wing Virus ◽  
Bee Colony ◽  
Queen Cell

In the past centuries, viruses have benefited from globalization to spread across the globe, infecting new host species and populations. A growing number of viruses have been documented in the western honey bee, Apis mellifera. Several of these contribute significantly to honey bee colony losses. This review synthetizes the knowledge of the diversity and distribution of honey-bee-infecting viruses, including recent data from high-throughput sequencing (HTS). After presenting the diversity of viruses and their corresponding symptoms, we surveyed the scientific literature for the prevalence of these pathogens across the globe. The geographical distribution shows that the most prevalent viruses (deformed wing virus, sacbrood virus, black queen cell virus and acute paralysis complex) are also the most widely distributed. We discuss the ecological drivers that influence the distribution of these pathogens in worldwide honey bee populations. Besides the natural transmission routes and the resulting temporal dynamics, global trade contributes to their dissemination. As recent evidence shows that these viruses are often multihost pathogens, their spread is a risk for both the beekeeping industry and the pollination services provided by managed and wild pollinators.

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