scholarly journals The joint contributions of environmental filtering and spatial processes to macroinvertebrate metacommunity dynamics in the alpine stream environment of Baima Snow Mountain, Southwest China

2021 ◽  
Author(s):  
Muhammad Farooq ◽  
Xianfu Li ◽  
Zhengfei Li ◽  
Ronglong Yang ◽  
Zhen Tian ◽  
...  
Keyword(s):  
Community Ecology ◽  
Community Composition ◽  
Community Assembly ◽  
Environmental Filtering ◽  
Mountain Stream ◽  
High Mountain ◽  
Spatial Processes ◽  
Relative Significance ◽  
Alpine Stream ◽  
Over Time

As a rapidly growing field of community ecology, the study of meta-communities provides an effective framework to unravel community assembly mechanisms by focusing on the relative contributions of environmental screening and spatial processes. While macroinvertebrates have been extensively investigated in many river ecosystems, meta-community ecology perspectives in high mountain stream networks are very limited. In this study, we assessed the role of ecological determinants and temporal dynamics in the macroinvertebrate meta-community assembly of an alpine stream situated in a dry-hot valley of Baima Snow Mountain, Northwest Yunnan. Our results show significant differences in the macroinvertebrate community composition across time periods. Spatial structuring and environmental filtering jointly drive the configuration of macroinvertebrate meta-community, with relative contributions to the variance in community composition varying over time. Redundancy Analysis (RDA) and variation partitioning indicate that environmental variables are the most important predictors of community organization in most scenarios, whereas spatial determinants also play a significant role. Moreover, the explanatory power, identity, and the relative significance of ecological indicators change over time. Particularly, in the years 2018 and 2019, stronger environmental filtering was found shaping community assembly, suggesting that deterministic mechanisms predominated in driving community dynamics in such a specific environment of the stream. However, spatial factors had a stronger predictive power on meta-community structures in 2017, implying conspicuous dispersal mechanisms which may be owing to increased connectivity amongst locations. Thereby, we inferred that the stream macroinvertebrate metacommunity composition can be regulated by the interaction of both spatial processes and environmental filtering, with relative contributions varying over time. Based on these findings, we suggest that community ecology studies in aquatic systems should be designed beyond single snapshot investigations.

scholarly journals The Joint Contributions of Environmental Filtering and Spatial Processes to Macroinvertebrate Metacommunity Dynamics in the Alpine Stream Environment of Baima Snow Mountain, Southwest China

Diversity ◽  
2022 ◽  
Vol 14 (1) ◽  
pp. 28
Author(s):  
Muhammad Farooq ◽  
Xianfu Li ◽  
Zhengfei Li ◽  
Ronglong Yang ◽  
Zhen Tian ◽  
...  
Keyword(s):  
Community Ecology ◽  
Community Assembly ◽  
Temporal Dynamics ◽  
Explanatory Power ◽  
Environmental Filtering ◽  
Ecological Factors ◽  
Spatial Processes ◽  
Relative Significance ◽  
Alpine Stream ◽  
Over Time

While macroinvertebrates are extensively investigated in many river ecosystems, meta-community ecology perspectives in alpine streams are very limited. We assessed the role of ecological factors and temporal dynamics in the macroinvertebrate meta-community assembly of an alpine stream situated in a dry-hot valley of Baima Snow Mountain, China. We found that spatial structuring and environmental filtering jointly drive the structure of macroinvertebrate meta-community, with relative contributions to the variance in community composition changing over time. RDA ordination and variation partitioning indicate that environmental variables are the most important predictors of community organization in most scenarios, whereas spatial determinants also play a significant role. Moreover, the explanatory power, identity, and the relative significance of ecological factors change over time. Particularly, in the years 2018 and 2019, stronger environmental filtering was found shaping community assembly, suggesting that deterministic mechanisms predominated in driving community dynamics. However, spatial factors had a stronger predictive power on meta-community structures in 2017, implying conspicuous dispersal mechanisms which may be owing to increased connectivity amongst sites. Thereby, we inferred that the alpine stream macroinvertebrate metacommunity composition can be regulated by the interaction of both spatial processes and environmental filtering, with relative contributions varying over time. Based on these findings, we suggest that community ecology studies in aquatic systems should be designed beyond single snapshot investigations.

scholarly journals Assembly processes of gastropod community change with horizontal and vertical zonation in ancient Lake Ohrid: a metacommunity speciation perspective

2016 ◽  
Vol 13 (10) ◽  
pp. 2901-2911 ◽  
Author(s):  
Torsten Hauffe ◽  
Christian Albrecht ◽  
Thomas Wilke
Keyword(s):  
Community Composition ◽  
Community Assembly ◽  
Environmental Filtering ◽  
Dispersal Limitation ◽  
Species Interaction ◽  
Relative Importance ◽  
Lake Depth ◽  
Ancient Lake ◽  
Lake Ohrid ◽  
Speciation Model

Abstract. The Balkan Lake Ohrid is the oldest and most diverse freshwater lacustrine system in Europe. However, it remains unclear whether species community composition, as well as the diversification of its endemic taxa, is mainly driven by dispersal limitation, environmental filtering, or species interaction. This calls for a holistic perspective involving both evolutionary processes and ecological dynamics, as provided by the unifying framework of the “metacommunity speciation model”.The current study used the species-rich model taxon Gastropoda to assess how extant communities in Lake Ohrid are structured by performing process-based metacommunity analyses. Specifically, the study aimed (1) to identifying the relative importance of the three community assembly processes and (2) to test whether the importance of these individual processes changes gradually with lake depth or discontinuously with eco-zone shifts.Based on automated eco-zone detection and process-specific simulation steps, we demonstrated that dispersal limitation had the strongest influence on gastropod community composition. However, it was not the exclusive assembly process, but acted together with the other two processes – environmental filtering and species interaction. The relative importance of the community assembly processes varied both with lake depth and eco-zones, though the processes were better predicted by the latter.This suggests that environmental characteristics have a pronounced effect on shaping gastropod communities via assembly processes. Moreover, the study corroborated the high importance of dispersal limitation for both maintaining species richness in Lake Ohrid (through its impact on community composition) and generating endemic biodiversity (via its influence on diversification processes). However, according to the metacommunity speciation model, the inferred importance of environmental filtering and biotic interaction also suggests a small but significant influence of ecological speciation. These findings contribute to the main goal of the Scientific Collaboration on Past Speciation Conditions in Lake Ohrid (SCOPSCO) deep drilling initiative – inferring the drivers of biotic evolution – and might provide an integrative perspective on biological and limnological dynamics in ancient Lake Ohrid.

scholarly journals Disturbance and recovery: a synthesis of microbial community reassembly following disturbance across realms

2021 ◽  
Author(s):  
Stephanie Jurburg ◽  
Shane Blowes ◽  
Ashley Shade ◽  
Nico Eisenhauer ◽  
Jonathan Chase
Keyword(s):  
Time Series ◽  
Microbial Community ◽  
Microbial Communities ◽  
Community Composition ◽  
Community Assembly ◽  
Disturbance And Recovery ◽  
Microbial Community Assembly ◽  
Community Reassembly ◽  
Over Time

Disturbances alter the diversity and composition of microbial communities, but whether microbiomes from different environments exhibit similar degrees of resistance or rates of recovery has not been evaluated. Here, we synthesized 86 time series of disturbed mammalian, aquatic, and soil microbiomes to examine how the recovery of microbial richness and community composition differed after disturbance. We found no general patterns in compositional variance (i.e., dispersion) in any microbiomes over time. Only mammalian microbiomes consistently exhibited decreases in richness following disturbance. Importantly, they tended to recover this richness, but not their composition, over time. In contrast, aquatic microbiomes tended to diverge from their pre-disturbance composition following disturbance. By synthesizing microbiome responses across environments, our study aids in the reconciliation of disparate microbial community assembly frameworks, and highlights the role of the environment in microbial community reassembly following disturbance.

scholarly journals Longitudinal assessment of the bovine ocular bacterial community dynamics in calves

2021 ◽  
Vol 3 (1) ◽  
Author(s):  
Alison C. Bartenslager ◽  
Nirosh D. Althuge ◽  
John Dustin Loy ◽  
Matthew M. Hille ◽  
Matthew L. Spangler ◽  
...  
Keyword(s):  
Bacterial Community ◽  
Community Composition ◽  
Community Dynamics ◽  
Bacterial Community Composition ◽  
Clinical Signs ◽  
Sampling Time ◽  
Experimental Population ◽  
Opportunistic Pathogens ◽  
Time Periods ◽  
Over Time

Abstract Background Infectious Bovine Keratoconjunctivitis (IBK), commonly known as pinkeye, is one of the most significant diseases of beef cattle. As such, IBK costs the US beef industry at least 150 million annually. However, strategies to prevent IBK are limited, with most cases resulting in treatment with antibiotics once the disease has developed. Longitudinal studies evaluating establishment of the ocular microbiota may identify critical risk periods for IBK outbreaks or changes in the microbiota that may predispose animals to IBK. Results In an attempt to characterize the establishment and colonization patterns of the bovine ocular microbiota, we conducted a longitudinal study consisting of 227 calves and evaluated the microbiota composition over time using amplicon sequence variants (ASVs) based on 16S rRNA sequencing data and culture-based approaches. Beef calves on trial consisted of both male (intact) and females. Breeds were composed of purebred Angus and composites with varying percentages of Simmental, Angus, and Red Angus breeds. Average age at the start of the trial was 65 days ±15.02 and all calves remained nursing on their dam until weaning (day 139 of the study). The trial consisted of 139 days with four sampling time points on day 0, 21, 41, and 139. The experimental population received three different vaccination treatments (autogenous, commercial (both inactivated bacteria), and adjuvant placebo), to assess the effectiveness of different vaccines for IBK prevention. A significant change in bacterial community composition was observed across time periods sampled compared to the baseline (p < 0.001). However, no treatment effect of vaccine was detected within the ocular bacterial community. The bacterial community composition with the greatest time span between sampling time periods (98d span) was most similar to the baseline sample collected, suggesting re-establishment of the ocular microbiota to baseline levels over time after perturbation. The effect of IgA levels on the microbial community was investigated in a subset of cattle within the study. However, no significant effect of IgA was observed. Significant changes in the ocular microbiota were identified when comparing communities pre- and post-clinical signs of IBK. Additionally, dynamic changes in opportunistic pathogens Moraxella spp. were observed and confirmed using culture based methods. Conclusions Our results indicate that the bovine ocular microbiota is well represented by opportunistic pathogens such as Moraxella and Mycoplasma. Furthermore, this study characterizes the diversity of the ocular microbiota in calves and demonstrates the plasticity of the ocular microbiota to change. Additionally, we demonstrate the ocular microbiome in calves is similar between the eyes and the perturbation of one eye results in similar changes in the other eye. We also demonstrate the bovine ocular microbiota is slow to recover post perturbation and as a result provide opportunistic pathogens a chance to establish within the eye leading to IBK and other diseases. Characterizing the dynamic nature of the ocular microbiota provides novel opportunities to develop potential probiotic intervention to reduce IBK outbreaks in cattle.

scholarly journals Environmental filtering and spatial processes in urban riparian forests

2016 ◽  
Vol 27 (5) ◽  
pp. 1023-1035 ◽  
Author(s):  
Marie-Hélène Brice ◽  
Stéphanie Pellerin ◽  
Monique Poulin
Keyword(s):  
Environmental Filtering ◽  
Riparian Forests ◽  
Spatial Processes

scholarly journals The community ecology of pathogens: coinfection, coexistence and community composition

2015 ◽  
Vol 18 (4) ◽  
pp. 401-415 ◽  
Author(s):  
Eric W. Seabloom ◽  
Elizabeth T. Borer ◽  
Kevin Gross ◽  
Amy E. Kendig ◽  
Christelle Lacroix ◽  
...  
Keyword(s):  
Community Ecology ◽  
Community Composition

scholarly journals Temporal Dynamics of Cloacal Microbiota in Adult Laying Chickens With and Without Access to an Outdoor Range

2021 ◽  
Vol 11 ◽  
Author(s):  
Janneke Schreuder ◽  
Francisca C. Velkers ◽  
Alex Bossers ◽  
Ruth J. Bouwstra ◽  
Willem F. de Boer ◽  
...  
Keyword(s):  
Microbial Community ◽  
Community Composition ◽  
Intestinal Microbiota ◽  
Environmental Changes ◽  
Temporal Dynamics ◽  
Microbial Community Composition ◽  
Sudden Change ◽  
Rrna Gene ◽  
Poultry House ◽  
Over Time

Associations between animal health and performance, and the host’s microbiota have been recently established. In poultry, changes in the intestinal microbiota have been linked to housing conditions and host development, but how the intestinal microbiota respond to environmental changes under farm conditions is less well understood. To gain insight into the microbial responses following a change in the host’s immediate environment, we monitored four indoor flocks of adult laying chickens three times over 16 weeks, during which two flocks were given access to an outdoor range, and two were kept indoors. To assess changes in the chickens’ microbiota over time, we collected cloacal swabs of 10 hens per flock and performed 16S rRNA gene amplicon sequencing. The poultry house (i.e., the stable in which flocks were housed) and sampling time explained 9.2 and 4.4% of the variation in the microbial community composition of the flocks, respectively. Remarkably, access to an outdoor range had no detectable effect on microbial community composition, the variability of microbiota among chickens of the same flock, or microbiota richness, but the microbiota of outdoor flocks became more even over time. Fluctuations in the composition of the microbiota over time within each poultry house were mainly driven by turnover in rare, rather than dominant, taxa and were unique for each flock. We identified 16 amplicon sequence variants that were differentially abundant over time between indoor and outdoor housed chickens, however none were consistently higher or lower across all chickens of one housing type over time. Our study shows that cloacal microbiota community composition in adult layers is stable following a sudden change in environment, and that temporal fluctuations are unique to each flock. By exploring microbiota of adult poultry flocks within commercial settings, our study sheds light on how the chickens’ immediate environment affects the microbiota composition.

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