Class I peroxisomal membrane protein import

2019 ◽  
Vol 68 ◽  
Author(s):  
Marc Fransen
Keyword(s):  
Membrane Protein ◽  
Protein Import ◽  
Class I ◽  
Peroxisomal Membrane ◽  
Peroxisomal Membrane Protein

scholarly journals The SH3 domain of the Saccharomyces cerevisiae peroxisomal membrane protein Pex13p functions as a docking site for Pex5p, a mobile receptor for the import PTS1-containing proteins.

1996 ◽  
Vol 135 (1) ◽  
pp. 97-109 ◽  
Author(s):  
Y Elgersma ◽  
L Kwast ◽  
A Klein ◽  
T Voorn-Brouwer ◽  
M van den Berg ◽  
...  
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Membrane Protein ◽  
Protein Import ◽  
Sh3 Domain ◽  
Type I ◽  
Peroxisomal Membrane ◽  
Peroxisomal Membrane Protein ◽  
Peroxisomal Targeting ◽  
Src Homology

We identified a Saccharomyces cerevisiae peroxisomal membrane protein, Pex13p, that is essential for protein import. A point mutation in the COOH-terminal Src homology 3 (SH3) domain of Pex13p inactivated the protein but did not affect its membrane targeting. A two-hybrid screen with the SH3 domain of Pex13p identified Pex5p, a receptor for proteins with a type I peroxisomal targeting signal (PTS1), as its ligand. Pex13p SH3 interacted specifically with Pex5p in vitro. We determined, furthermore, that Pex5p was mainly present in the cytosol and only a small fraction was associated with peroxisomes. We therefore propose that Pex13p is a component of the peroxisomal protein import machinery onto which the mobile Pex5p receptor docks for the delivery of the selected PTS1 protein.

scholarly journals Peroxisomal Membrane Protein Import Does Not Require Pex17p

2002 ◽  
Vol 277 (19) ◽  
pp. 16498-16504 ◽  
Author(s):  
Courtney C. Harper ◽  
Sarah T. South ◽  
J. Michael McCaffery ◽  
Stephen J. Gould
Keyword(s):  
Membrane Protein ◽  
Protein Import ◽  
Peroxisomal Membrane ◽  
Peroxisomal Membrane Protein

scholarly journals The importomer is a peroxisomal membrane protein translocase

2020 ◽  
Author(s):  
James S Martenson ◽  
Hanson Tam ◽  
Alexander J McQuown ◽  
Dvir Reif ◽  
Jing Zhou ◽  
...  
Keyword(s):  
Membrane Protein ◽  
Matrix Protein ◽  
Protein Import ◽  
Protein Targeting ◽  
Fundamental Principle ◽  
Specific Protein ◽  
En Bloc ◽  
Peroxisomal Membrane ◽  
Peroxisomal Membrane Protein ◽  
Protein Biogenesis

ABSTRACTThree sites of membrane protein biogenesis (the endoplasmic reticulum, mitochondria and chloroplasts) receive unfolded substrates from organelle-specific protein targeting factors, then integrate them using separate translocation channels. Peroxisomes also receive membrane proteins from known targeting factors, but whether a separate translocase is needed for integration remains unknown. Here, using a novel genetic screening strategy, we reveal that the importomer–known for matrix protein import–integrates the peroxisomal membrane protein Pex14. In importomer mutants, Pex14 is arrested in a pre-integrated state on the peroxisome surface. To undergo integration, a Pex14 translocation signal binds the importomer’s substrate receptor Pex5 at a distinct site from matrix proteins. En bloc translocation of an engineered protein complex with Pex14’s luminal region argues that integration occurs without substrate unfolding. Our work shows that the handling of membrane protein targeting and integration by discrete machineries is a fundamental principle shared by diverse membrane protein biogenesis pathways.

scholarly journals PER3, a Gene Required for Peroxisome Biogenesis inPichia pastoris, Encodes a Peroxisomal Membrane Protein Involved in Protein Import

1995 ◽  
Vol 270 (18) ◽  
pp. 10940-10951 ◽  
Author(s):  
Henry Liu ◽  
Xuqiu Tan ◽  
Kimberly A. Russell ◽  
Marten Veenhuis ◽  
James M. Cregg
Keyword(s):  
Membrane Protein ◽  
Protein Import ◽  
Peroxisome Biogenesis ◽  
Peroxisomal Membrane ◽  
Peroxisomal Membrane Protein

scholarly journals Pex12 Interacts with Pex5 and Pex10 and Acts Downstream of Receptor Docking in Peroxisomal Matrix Protein Import

1999 ◽  
Vol 147 (4) ◽  
pp. 761-774 ◽  
Author(s):  
Chia-Che Chang ◽  
Daniel S. Warren ◽  
Katherine A. Sacksteder ◽  
Stephen J. Gould
Keyword(s):  
Membrane Protein ◽  
Matrix Protein ◽  
Protein Import ◽  
Zellweger Syndrome ◽  
Binding Domain ◽  
Ring Domain ◽  
Zinc Binding ◽  
Peroxisomal Membrane ◽  
Peroxisomal Membrane Protein ◽  
Zinc Binding Domain

Peroxisomal matrix protein import requires PEX12, an integral peroxisomal membrane protein with a zinc ring domain at its carboxy terminus. Mutations in human PEX12 result in Zellweger syndrome, a lethal neurological disorder, and implicate the zinc ring domain in PEX12 function. Using two-hybrid studies, blot overlay assays, and coimmunoprecipitation experiments, we observed that the zinc-binding domain of PEX12 binds both PEX5, the PTS1 receptor, and PEX10, another integral peroxisomal membrane protein required for peroxisomal matrix protein import. Furthermore, we identified a patient with a missense mutation in the PEX12 zinc-binding domain, S320F, and observed that this mutation reduces the binding of PEX12 to PEX5 and PEX10. Overexpression of either PEX5 or PEX10 can suppress this PEX12 mutation, providing genetic evidence that these interactions are biologically relevant. PEX5 is a predominantly cytoplasmic protein and previous PEX5-binding proteins have been implicated in docking PEX5 to the peroxisome surface. However, we find that loss of PEX12 or PEX10 does not reduce the association of PEX5 with peroxisomes, demonstrating that these peroxins are not required for receptor docking. These and other results lead us to propose that PEX12 and PEX10 play direct roles in peroxisomal matrix protein import downstream of the receptor docking event.

scholarly journals Peroxisome Synthesis in the Absence of Preexisting Peroxisomes

1999 ◽  
Vol 144 (2) ◽  
pp. 255-266 ◽  
Author(s):  
Sarah T. South ◽  
Stephen J. Gould
Keyword(s):  
Membrane Proteins ◽  
Membrane Protein ◽  
Matrix Protein ◽  
Protein Import ◽  
Zellweger Syndrome ◽  
Matrix Proteins ◽  
Peroxisomal Membrane ◽  
Peroxisomal Membrane Protein ◽  
The Matrix ◽  
Inactivating Mutations

Zellweger syndrome and related diseases are caused by defective import of peroxisomal matrix proteins. In all previously reported Zellweger syndrome cell lines the defect could be assigned to the matrix protein import pathway since peroxisome membranes were present, and import of integral peroxisomal membrane proteins was normal. However, we report here a Zellweger syndrome patient (PBD061) with an unusual cellular phenotype, an inability to import peroxisomal membrane proteins. We also identified human PEX16, a novel integral peroxisomal membrane protein, and found that PBD061 had inactivating mutations in the PEX16 gene. Previous studies have suggested that peroxisomes arise from preexisting peroxisomes but we find that expression of PEX16 restores the formation of new peroxisomes in PBD061 cells. Peroxisome synthesis and peroxisomal membrane protein import could be detected within 2–3 h of PEX16 injection and was followed by matrix protein import. These results demonstrate that peroxisomes do not necessarily arise from division of preexisting peroxisomes. We propose that peroxisomes may form by either of two pathways: one that involves PEX11-mediated division of preexisting peroxisomes, and another that involves PEX16-mediated formation of peroxisomes in the absence of preexisting peroxisomes.

scholarly journals Identification of Pex13p a peroxisomal membrane receptor for the PTS1 recognition factor.

1996 ◽  
Vol 135 (1) ◽  
pp. 111-121 ◽  
Author(s):  
R Erdmann ◽  
G Blobel
Keyword(s):  
Membrane Protein ◽  
Protein Import ◽  
Signal Sequence ◽  
Membrane Receptor ◽  
Matrix Proteins ◽  
Signal Recognition ◽  
Peroxisomal Membrane ◽  
Peroxisomal Membrane Protein ◽  
Src Homology 3 ◽  
Src Homology

We have identified an S. cerevisiae integral peroxisomal membrane protein of M of 42,705 (Pex13p) that is a component of the peroxisomal protein import apparatus. Pex13p's most striking feature is an src homology 3 (SH3) domain that interacts directly with yeast Pex5p (former Pas10p), the recognition factor for the COOH-terminal tripeptide signal sequence (PTS1), but not with Pex7p (former Pas7p), the recognition factor for the NH2-terminal nonapeptide signal (PTS2) of peroxisomal matrix proteins. Hence, Pex13p serves as peroxisomal membrane receptor for at least one of the two peroxisomal signal recognition factors. Cells deficient in Pex13p are unable to import peroxisomal matrix proteins containing PTS1 and, surprisingly, also those containing PTS2. Pex13p deficient cells retain membranes containing the peroxisomal membrane protein Pex11p (former Pmp27p), consistent with the existence of independent pathways for the integration of peroxisomal membrane proteins and for the translocation of peroxisomal matrix proteins.

scholarly journals Pex22p of Pichia pastoris, Essential for Peroxisomal Matrix Protein Import, Anchors the Ubiquitin-Conjugating Enzyme, Pex4p, on the Peroxisomal Membrane

1999 ◽  
Vol 146 (1) ◽  
pp. 99-112 ◽  
Author(s):  
Antonius Koller ◽  
William B. Snyder ◽  
Klaas Nico Faber ◽  
Thibaut J. Wenzel ◽  
Linda Rangell ◽  
...  
Keyword(s):  
Pichia Pastoris ◽  
Membrane Protein ◽  
Matrix Protein ◽  
Protein Import ◽  
Hypothetical Protein ◽  
Peroxisomal Membrane ◽  
Peroxisomal Membrane Protein ◽  
Ubiquitin Conjugating Enzyme ◽  
Conjugating Enzyme

We isolated a Pichia pastoris mutant that was unable to grow on the peroxisome-requiring media, methanol and oleate. Cloning the gene by complementation revealed that the encoded protein, Pex22p, is a new peroxin. A Δpex22 strain does not grow on methanol or oleate and is unable to import peroxisomal matrix proteins. However, this strain targets peroxisomal membrane proteins to membranes, most likely peroxisomal remnants, detectable by fluorescence and electron microscopy. Pex22p, composed of 187 amino acids, is an integral peroxisomal membrane protein with its NH2 terminus in the matrix and its COOH terminus in the cytosol. It contains a 25–amino acid peroxisome membrane-targeting signal at its NH2 terminus. Pex22p interacts with the ubiquitin-conjugating enzyme Pex4p, a peripheral peroxisomal membrane protein, in vivo, and in a yeast two-hybrid experiment. Pex22p is required for the peroxisomal localization of Pex4p and in strains lacking Pex22p, the Pex4p is cytosolic and unstable. Therefore, Pex22p anchors Pex4p at the peroxisomal membrane. Strains that do not express Pex4p or Pex22p have similar phenotypes and lack Pex5p, suggesting that Pex4p and Pex22p act at the same step in peroxisome biogenesis. The Saccharomyces cerevisiae hypothetical protein, Yaf5p, is the functional homologue of P. pastoris Pex22p.

scholarly journals Hydrophobic Regions Adjacent to Transmembrane Domains 1 and 5 Are Important for the Targeting of the 70-kDa Peroxisomal Membrane Protein

2007 ◽  
Vol 282 (46) ◽  
pp. 33831-33844 ◽  
Author(s):  
Yoshinori Kashiwayama ◽  
Kota Asahina ◽  
Masashi Morita ◽  
Tsuneo Imanaka
Keyword(s):  
Amino Acid ◽  
Membrane Protein ◽  
Protein Targeting ◽  
Fluorescent Protein ◽  
Chinese Hamster Ovary Cells ◽  
Intracellular Localization ◽  
Chinese Hamster ◽  
Transmembrane Domains ◽  
Peroxisomal Membrane ◽  
Peroxisomal Membrane Protein

The 70-kDa peroxisomal membrane protein (PMP70) is a major component of peroxisomal membranes. Human PMP70 consists of 659 amino acid residues and has six putative transmembrane domains (TMDs). PMP70 is synthesized on cytoplasmic ribosomes and targeted posttranslationally to peroxisomes by an unidentified peroxisomal membrane protein targeting signal (mPTS). In this study, to examine the mPTS within PMP70 precisely, we expressed various COOH-terminally or NH2-terminally deleted constructs of PMP70 fused with green fluorescent protein (GFP) in Chinese hamster ovary cells and determined their intracellular localization by immunofluorescence. In the COOH-terminally truncated PMP70, PMP70(AA.1-144)-GFP, including TMD1 and TMD2 of PMP70, was still localized to peroxisomes. However, by further removal of TMD2, PMP70(AA.1-124)-GFP lost the targeting ability, and PMP70(TMD2)-GFP did not target to peroxisomes by itself. The substitution of TMD2 in PMP70(AA.1-144)-GFP for TMD4 or TMD6 did not affect the peroxisomal localization, suggesting that PMP70(AA.1-124) contains the mPTS and an additional TMD is required for the insertion into the peroxisomal membrane. In the NH2-terminal 124-amino acid region, PMP70 possesses hydrophobic segments in the region adjacent to TMD1. By the disruption of these hydrophobic motifs by the mutation of L21Q/L22Q/L23Q or I70N/L71Q, PMP70(AA.1-144)-GFP lost targeting efficiency. The NH2-terminally truncated PMP70, GFP-PMP70(AA.263-375), including TMD5 and TMD6, exhibited the peroxisomal localization. PMP70(AA.263-375) also possesses hydrophobic residues (Ile307/Leu308) in the region adjacent to TMD5, which were important for targeting. These results suggest that PMP70 possesses two distinct targeting signals, and hydrophobic regions adjacent to the first TMD of each region are important for targeting.

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