scholarly journals Dynamic relationships between microbial biomass, respiration, inorganic nutrients and enzyme activities: informing enzyme-based decomposition models

2013 ◽  
Vol 4 ◽  
Author(s):  
D. L. Moorhead ◽  
Z. L. Rinkes ◽  
R. L. Sinsabaugh ◽  
M. N. Weintraub
2003 ◽  
Vol 94 (2) ◽  
pp. 179-192 ◽  
Author(s):  
Cristiano Casucci ◽  
Benedict C. Okeke ◽  
William T. Frankenberger

2018 ◽  
Author(s):  
Ye Huang ◽  
Bertrand Guenet ◽  
Philippe Ciais ◽  
Ivan A. Janssens ◽  
Jennifer L. Soong ◽  
...  

Abstract. The role of soil microorganisms in regulating soil organic matter (SOM) decomposition is of primary importance in the carbon cycle, and in particular in the context of global change. Modelling soil microbial community dynamics to simulate its impact on soil gaseous carbon (C) emissions and nitrogen (N) mineralization at large spatial scales is a recent research field with the potential to improve predictions of SOM responses to global climate change. We here present a SOM model called ORCHIMIC whose input data that are consistent with those of global vegetation models. The model simulates decomposition of SOM by explicitly accounting for enzyme production and distinguishing three different microbial functional groups: fresh organic matter (FOM) specialists, SOM specialists, and generalists, while implicitly also accounting for microbes that do not produce extracellular enzymes, i.e. cheaters. This ORCHIMIC model and two other organic matter decomposition models, CENTURY (based on first order kinetics and representative for the structure of most current global soil carbon models) and PRIM (with FOM accelerating the decomposition rate of SOM) were calibrated to reproduce the observed respiration fluxes from FOM and SOM and their possible interactions from incubation experiments of Blagodatskaya et al. (2014). Among the three models, ORCHIMIC was the only one that captured well both the temporal dynamics of the respiratory fluxes and the magnitude of the priming effect observed during the incubation experiment. ORCHIMIC also reproduced well the temporal dynamics of microbial biomass. We then applied different idealized changes to the model input data, i.e. a 5 K stepwise increase of temperature and/or a doubling of plant litter inputs. Under 5 K warming, ORCHIMIC predicted a 0.002 K−1 decrease in the C use efficiency (defined as the ratio of C allocated to microbial growth to the sum of C allocated to growth and respiration) and a 3 % loss of SOC. Under the double litter input scenario, ORCHIMIC predicted a doubling of microbial biomass, while SOC stock increased by less than 1 % due to the priming effect. This limited increase in SOC stock contrasted with the proportional increase in SOC stock as modelled by the conventional SOC decomposition model (CENTURY), which cannot reproduce the priming effect. If temperature increased by 5 K and litter input is doubled, the model predicted almost the same loss of SOC as when only temperature was increased. These tests suggest that the responses of SOC stock to warming and increasing input may differ a lot from those simulated by conventional SOC decomposition models, when microbial dynamics is included. The next step is to incorporate the ORCHIMIC model into a global vegetation model to perform simulations for representative sites and future scenarios.


2011 ◽  
Vol 47 (6) ◽  
pp. 655-667 ◽  
Author(s):  
Veronica Acosta-Martínez ◽  
Robert Lascano ◽  
Francisco Calderón ◽  
Jill D. Booker ◽  
Ted M. Zobeck ◽  
...  

2013 ◽  
Vol 798-799 ◽  
pp. 1139-1143
Author(s):  
Chao Wang ◽  
Shuai Cheng ◽  
Pei Fang Wang ◽  
Yan Yan Ma

The relationship between microbial biomass and enzyme activities under heavy metal pollution had attracted much attention in ecology. The experimental sediment samples were supplemented with Pb and Cr and incubated at room temperature for a month. Microbial properties such as microbial biomass, urease, catalase and cellulase activities, together with several chemical properties such as pH, total organic carbon , oxidation-reduction potential, total nitrogen and phosphorus were measured to evaluate changes in sediment qualities. Our results demonstrate that heavy metals would inhibit sediment microbe biomass and enzyme activities. Such decreases in sediments microbial biomass and enzyme activities by Pb and Cr contamination may help to evaluate heavy metals contaminated soil ecologies.


PeerJ ◽  
2020 ◽  
Vol 8 ◽  
pp. e8531 ◽  
Author(s):  
Yulu Zhang ◽  
Dong Cui ◽  
Haijun Yang ◽  
Nijat Kasim

Background A wetland is a special ecosystem formed by the interaction of land and water. The moisture content variation will greatly affect the function and structure of the wetland internal system. Method In this paper, three kinds of wetlands with different flooding levels (Phragmites australis wetland (long-term flooding), Calamagrostis epigeios wetland(seasonal flooding) and Ditch millet wetland (rarely flooded)) in Ili Valley of Xinjiang China were selected as research areas. The changes of microbial biomass carbon, soil physical and chemical properties in wetlands were compared, and redundancy analysis was used to analyze the correlation between soil physical and chemical properties, microbial biomass carbon and enzyme activities (soil sucrase, catalase, amylase and urease). The differences of soil enzyme activities and its influencing factors under different flooding conditions in Ili Valley were studied and discussed. Result The results of this study were the following: (1) The activities of sucrase and amylase in rarely flooded wetlands and seasonally flooded wetlands were significantly higher than those in long-term flooded wetlands; the difference of catalase activity in seasonal flooded wetland was significant and the highest. (2) Redundancy analysis showed that soil organic carbon, dissolved organic carbon, total phosphorus and soil microbial biomass carbon had significant effects on soil enzyme activity (p < 0.05). (3) The correlation between soil organic carbon and the sucrase activity, total phosphorus and the catalase activity was the strongest; while soil organic carbon has a significant positive correlation with invertase, urease and amylase activity, with a slight influence on catalase activity. The results of this study showed that the content of organic carbon, total phosphorus and other soil fertility factors in the soil would be increased and the enzyme activity would be enhanced if the flooding degree was changed properly.


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