scholarly journals Substrate Pre-loading Influences Initial Colonization of GAC Biofilter Biofilms

2021 ◽  
Vol 11 ◽  
Author(s):  
Wen Qin ◽  
Frederik Hammes
Keyword(s):  
Microbial Community ◽  
Community Composition ◽  
Continuous Flow ◽  
Temporal Dynamics ◽  
Microbial Community Composition ◽  
Pollutant Removal ◽  
Column Experiments ◽  
High Coverage ◽  
Term Operation

Microbial community composition and stability affect pollutant removal for biological/granular activated carbon (BAC/GAC) processes. Here, we pre-loaded the organic carbon substrates sucrose, lactose, and Lysogeny Broth (LB) medium onto new GAC prior to use and then tested whether this substrate pre-loading promoted development of biofilms with high coverage that remained stable for prolonged operational periods. Temporal dynamics of the biomass and microbial community on the GAC were monitored via flow cytometry (FCM) and sequencing, respectively, in both batch and continuous-flow experiments. In comparison with the non-loaded GAC (control), the initial biofilm biomass on substrate-loaded GAC was 3–114 times higher, but the initial richness was considerably lower (only accounting for 13–28% of the control). The initial community compositions were significantly different between batch and continuous-flow column experiments, even when loaded with the same substrates. In the continuous-flow column experiments, both biomass and microbial community composition became remarkably similar to the control filters after 64 days of operation. From these findings, we conclude that substrate-loaded GAC could enhance initial colonization, affecting both biomass and microbial community composition. However, the biomass and composition did not remain stable during long-term operation due to continuous dispersal and competition from influent bacteria.

scholarly journals Temporal Dynamics of Cloacal Microbiota in Adult Laying Chickens With and Without Access to an Outdoor Range

2021 ◽  
Vol 11 ◽  
Author(s):  
Janneke Schreuder ◽  
Francisca C. Velkers ◽  
Alex Bossers ◽  
Ruth J. Bouwstra ◽  
Willem F. de Boer ◽  
...  
Keyword(s):  
Microbial Community ◽  
Community Composition ◽  
Intestinal Microbiota ◽  
Environmental Changes ◽  
Temporal Dynamics ◽  
Microbial Community Composition ◽  
Sudden Change ◽  
Rrna Gene ◽  
Poultry House ◽  
Over Time

Associations between animal health and performance, and the host’s microbiota have been recently established. In poultry, changes in the intestinal microbiota have been linked to housing conditions and host development, but how the intestinal microbiota respond to environmental changes under farm conditions is less well understood. To gain insight into the microbial responses following a change in the host’s immediate environment, we monitored four indoor flocks of adult laying chickens three times over 16 weeks, during which two flocks were given access to an outdoor range, and two were kept indoors. To assess changes in the chickens’ microbiota over time, we collected cloacal swabs of 10 hens per flock and performed 16S rRNA gene amplicon sequencing. The poultry house (i.e., the stable in which flocks were housed) and sampling time explained 9.2 and 4.4% of the variation in the microbial community composition of the flocks, respectively. Remarkably, access to an outdoor range had no detectable effect on microbial community composition, the variability of microbiota among chickens of the same flock, or microbiota richness, but the microbiota of outdoor flocks became more even over time. Fluctuations in the composition of the microbiota over time within each poultry house were mainly driven by turnover in rare, rather than dominant, taxa and were unique for each flock. We identified 16 amplicon sequence variants that were differentially abundant over time between indoor and outdoor housed chickens, however none were consistently higher or lower across all chickens of one housing type over time. Our study shows that cloacal microbiota community composition in adult layers is stable following a sudden change in environment, and that temporal fluctuations are unique to each flock. By exploring microbiota of adult poultry flocks within commercial settings, our study sheds light on how the chickens’ immediate environment affects the microbiota composition.

Organic matter additions to soil and effects on microbially mediated carbon cycling

2020 ◽  
Author(s):  
Rachel hasler ◽  
Mark pawlett ◽  
Jim harris ◽  
Helen bostock ◽  
Marc redmile-gordon
Keyword(s):  
Organic Matter ◽  
Microbial Community ◽  
Carbon Cycling ◽  
Community Composition ◽  
Soil Microbial Community ◽  
Microbial Community Composition ◽  
Soil Microbial ◽  
Horse Manure ◽  
Soil Microbial Community Composition

<p>The type of soil organic amendment selected can have profound implications for carbon cycling processes in soils. Understanding the link between this choice and its effect on the soil microbiome will improve our understanding of the capacity of these materials to improve carbon sequestration and cycling dynamics. Understanding and facilitating the lifestyle strategies of microorganisms processing organic matter is essential to improving our understanding of the terrestrial carbon cycle. This research focuses on utilising organic amendments to alter the indigenous soil microbial community composition and function to improve the capacity of the soil to cycle and store carbon in horticultural soils.  The effects of annual application of various organic fertilisers (peat, bracken, bark, horse manure, garden compost) in a long-term (10year) field experiment were explored. Sampling was completed pre and post application of organic matter within one season (following 10 years of applications) to identify which organic amendment was more effective in producing benefits to plants through improved soil organic matter and which amendments provide the greatest legacy effect on carbon cycling. The response of the soil microbial community composition (phospholipid fatty acid analysis) and carbon functional cycling dynamics (respiration using MicroResp™) were determined with a view to improving our understanding of the interaction between the materials applied and microbial processes. PCA of the MicroResp™ data identified that all treatments had a different functional profile compared to the control[PM1]  with peat being significantly different from all other treatments. Horse manure and bark differed significantly within a single growing season; prior and post organic matter addition in spring 2019.  Microbial biomass measurements for garden compost and horse manure were significantly higher following organic matter addition compared to all other treatments and the control[PM2] .  All treatments had a significant effect [PM3] on hot water extractable carbon and total carbon. Peat had a significantly different effect[PM4] , when compared to other treatments, on the soil PLFA profile and bark application significantly increased [PM5] the neutral lipid (NLFA) biomarker 16:1ω5.  Bark and horse manure application both significantly increased PLFA fungal biomarker 18:2ω6,9. No significant differences were found between the fungal/bacterial ratios of the organic matter additions prior to being added to the soil. These findings show that altering the resources available to the soil microbial community has a significant impact on soil microbial community composition and microbially mediated carbon cycling functionality. Increasing our understanding of how soil functions are altered by land management decisions will enable better informed predictions of the long-term benefits of organic matter applications on carbon sequestration and cycling dynamics.</p>

scholarly journals Microbial community composition and abundance after millennia of submarine permafrost warming

2019 ◽  
Author(s):  
Julia Mitzscherling ◽  
Fabian Horn ◽  
Maria Winterfeld ◽  
Linda Mahler ◽  
Jens Kallmeyer ◽  
...  
Keyword(s):  
Microbial Community ◽  
Community Composition ◽  
Pore Water ◽  
Negative Correlation ◽  
Microbial Community Composition ◽  
Microbial Abundance ◽  
Bacterial Gene ◽  
Gene Abundance ◽  
Permafrost Warming

Abstract. Warming of the Arctic led to an increase of permafrost temperatures by about 0.3 °C during the last decade. Permafrost warming is associated with increasing sediment water content, permeability and diffusivity and could on the long-term alter microbial community composition and abundance even before permafrost thaws. We studied the long-term effect (up to 2500 years) of submarine permafrost warming on microbial communities along an onshore-offshore transect on the Siberian Arctic Shelf displaying a natural temperature gradient of more than 10 °C. We analysed the in-situ development of bacterial abundance and community composition through total cell counts (TCC), quantitative PCR of bacterial gene abundance and amplicon sequencing, and correlated the microbial community data with temperature, pore water chemistry and sediment physicochemical parameters. On time-scales of centuries, permafrost warming coincided with an overall decreasing microbial abundance while millennia after warming microbial abundance was similar to cold onshore permafrost and DOC content was least. Based on correlation analysis TCC unlike bacterial gene abundance showed a significant rank-based negative correlation with increasing temperature while both TCC and bacterial gene copy numbers showed a negative correlation with salinity. Bacterial community composition correlated only weakly with temperature but strongly with pore-water stable isotope signatures and depth, while it showed no correlation with salinity. Microbial community composition showed substantial spatial variation and an overall dominance of Actinobacteria, Chloroflexi, Firmicutes, Gemmatimonadetes and Proteobacteria which are amongst the microbial taxa that were found to be active in other frozen permafrost environments as well. We suggest that, millennia after permafrost warming by over 10 °C, microbial community composition and abundance show some indications for proliferation but mainly reflect the sedimentation history and paleo-environment and not a direct effect through warming.

scholarly journals Soil Microbial Community Based on PLFA Profiles in an Age Sequence of Pomegranate Plantation in the Middle Yellow River Floodplain

Diversity ◽  
2021 ◽  
Vol 13 (9) ◽  
pp. 408
Author(s):  
Shilin Wang ◽  
Xinyu Yan ◽  
Dong Wang ◽  
Imran Ahammad Siddique ◽  
Ji Chen ◽  
...  
Keyword(s):  
Microbial Community ◽  
Community Composition ◽  
Soil Microbial Community ◽  
Yellow River ◽  
Microbial Community Composition ◽  
Stand Age ◽  
Soil Microbial ◽  
Age Sequence ◽  
Soil Microbial Community Composition

Pomegranate (Punica granatum L.) is one of the most important fruit trees in semi-arid land. Previous studies were primarily focused on soil microbial community composition under different pomegranate plantation managements. However, soil microbial community composition under long-term pomegranate plantation has rarely been studied. We investigated pomegranate plantation along with an age sequence (i.e., 1, 3, 5, and 10 years after pomegranate plantation; abbreviated by P1, P3, P5, P10, respectively) in the Middle Yellow River floodplain. Our objectives were to address (1) variations of soil physicochemical properties and (2) changes in soil microbial community composition and the influential factors. The results demonstrated that the soil water content of pomegranate plantation decreased with the increase of pomegranate plantation stand age. Specifically, dissolved organic carbon, ammonium, and available phosphorus increased significantly with stand age both at 0–10- and 10–20-cm soil depths. The P10 had the highest microbial phospholipid fatty acid (PLFA) profiles, including fungi, bacteria, Gram-positive bacteria, Gram-negative bacteria, and arbuscular mycorrhizal fungi. The ratio of fungal PLFAs to bacterial PLFAs increased and the ratio of Gram-positive to Gram-negative bacterial PLFAs decreased along the pomegranate plantation stand age. Dissolved organic carbon was the most important influential factor among the studied variables, which explained 42.2% variation of soil microbial community. In summary, the long-term plantation of pomegranate elevated soil microbial biomass and altered microbial community composition.

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