scholarly journals A Biased Proportional-Integral-Derivative-Incorporated Latent Factor Analysis Model

2021 ◽  
Vol 11 (12) ◽  
pp. 5724
Author(s):  
Jialu Sui ◽  
Jian Yin

Nowadays, as the number of items is increasing and the number of items that users have access to is limited, user-item preference matrices in recommendation systems are always sparse. This leads to a data sparsity problem. The latent factor analysis (LFA) model has been proposed as the solution to the data sparsity problem. As the basis of the LFA model, the singular value decomposition (SVD) model, especially the biased SVD model, has great recommendation effects in high-dimensional sparse (HiDs) matrices. However, it has the disadvantage of requiring several iterations before convergence. Besides, the model PID-incorporated SGD-based LFA (PSL) introduces the principle of discrete PID controller into the stochastic gradient descent (SGD), the learning algorithm of the SVD model. It could solve the problem of slow convergence speed, but its accuracy of recommendation needs to be improved. In order to make better solution, this paper fuses the PSL model with the biased SVD model, hoping to obtain better recommendation result by combining their advantages and reconciling their disadvantages. The experiments show that this biased PSL model performs better than the traditional matrix factorization algorithms on different sizes of datasets.

1997 ◽  
Vol 24 (1) ◽  
pp. 3-18 ◽  
Author(s):  
Michael W. Browne ◽  
Krishna Tateneni

2018 ◽  
Vol 66 ◽  
pp. S11-S12 ◽  
Author(s):  
A. Coni ◽  
S. Mellone ◽  
M. Colpo ◽  
S. Bandinelli ◽  
L. Chiari

2020 ◽  
Author(s):  
Weiguang Mao ◽  
Maziyar Baran Pouyan ◽  
Dennis Kostka ◽  
Maria Chikina

AbstractMotivationSingle cell RNA sequencing (scRNA-seq) enables transcriptional profiling at the level of individual cells. With the emergence of high-throughput platforms datasets comprising tens of thousands or more cells have become routine, and the technology is having an impact across a wide range of biomedical subject areas. However, scRNA-seq data are high-dimensional and affected by noise, so that scalable and robust computational techniques are needed for meaningful analysis, visualization and interpretation. Specifically, a range of matrix factorization techniques have been employed to aid scRNA-seq data analysis. In this context we note that sources contributing to biological variability between cells can be discrete (or multi-modal, for instance cell-types), or continuous (e.g. pathway activity). However, no current matrix factorization approach is set up to jointly infer such mixed sources of variability.ResultsTo address this shortcoming, we present a new probabilistic single-cell factor analysis model, Non-negative Independent Factor Analysis (NIFA), that combines features of complementary approaches like Independent Component Analysis (ICA), Principal Component Analysis (PCA), and Non-negative Matrix Factorization (NMF). NIFA simultaneously models uni- and multi-modal latent factors and can so isolate discrete cell-type identity and continuous pathway-level variations into separate components. Similar to NMF, NIFA constrains factor loadings to be non-negative in order to increase biological interpretability. We apply our approach to a range of data sets where cell-type identity is known, and we show that NIFA-derived factors outperform results from ICA, PCA and NMF in terms of cell-type identification and biological interpretability. Studying an immunotherapy dataset in detail, we show that NIFA identifies biomedically meaningful sources of variation, derive an improved expression signature for regulatory T-cells, and identify a novel myeloid cell subtype associated with treatment response. Overall, NIFA is a general approach advancing scRNA-seq analysis capabilities and it allows researchers to better take advantage of their data. NIFA is available at https://github.com/wgmao/[email protected]


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