scholarly journals Translation Initiation Regulated by RNA-Binding Protein in Mammals: The Modulation of Translation Initiation Complex by Trans-Acting Factors

Cells ◽  
2021 ◽  
Vol 10 (7) ◽  
pp. 1711
Author(s):  
Akira Fukao ◽  
Takumi Tomohiro ◽  
Toshinobu Fujiwara
Keyword(s):  
Translation Initiation ◽  
Rna Binding ◽  
Initiation Factor ◽  
Cis Elements ◽  
Translation Rate ◽  
Cis Element ◽  
Rate Limiting Step ◽  
Eif4f Complex ◽  
Cap Binding Complex ◽  
Rate Limiting

Protein synthesis is tightly regulated at each step of translation. In particular, the formation of the basic cap-binding complex, eukaryotic initiation factor 4F (eIF4F) complex, on the 5′ cap structure of mRNA is positioned as the rate-limiting step, and various cis-elements on mRNA contribute to fine-tune spatiotemporal protein expression. The cis-element on mRNAs is recognized and bound to the trans-acting factors, which enable the regulation of the translation rate or mRNA stability. In this review, we focus on the molecular mechanism of how the assembly of the eIF4F complex is regulated on the cap structure of mRNAs. We also summarize the fine-tuned regulation of translation initiation by various trans-acting factors through cis-elements on mRNAs.

scholarly journals Translation Initiation Machinery as a Tumor Selective Target for Radiosensitization

2021 ◽  
Vol 22 (19) ◽  
pp. 10664
Author(s):  
Stacey L. Lehman ◽  
Evan D. Wilson ◽  
Kevin Camphausen ◽  
Philip J. Tofilon
Keyword(s):  
Tumor Cells ◽  
Translation Initiation ◽  
Translational Control ◽  
Ribosome Biogenesis ◽  
Control Of Gene Expression ◽  
Translational Machinery ◽  
Rate Limiting Step ◽  
Limiting Step ◽  
Cap Binding Complex ◽  
Rate Limiting

Towards improving the efficacy of radiotherapy, one approach is to target the molecules and processes mediating cellular radioresponse. Along these lines, translational control of gene expression has been established as a fundamental component of cellular radioresponse, which suggests that the molecules participating in this process (i.e., the translational machinery) can serve as determinants of radiosensitivity. Moreover, the proteins comprising the translational machinery are often overexpressed in tumor cells suggesting the potential for tumor specific radiosensitization. Studies to date have shown that inhibiting proteins involved in translation initiation, the rate-limiting step in translation, specifically the three members of the eIF4F cap binding complex eIF4E, eIF4G, and eIF4A as well as the cap binding regulatory kinases mTOR and Mnk1/2, results in the radiosensitization of tumor cells. Because ribosomes are required for translation initiation, inhibiting ribosome biogenesis also appears to be a strategy for radiosensitization. In general, the radiosensitization induced by targeting the translation initiation machinery involves inhibition of DNA repair, which appears to be the consequence of a reduced expression of proteins critical to radioresponse. The availability of clinically relevant inhibitors of this component of the translational machinery suggests opportunities to extend this approach to radiosensitization to patient care.

scholarly journals The translation initiation factor eIF-4B contains an RNA-binding region that is distinct and independent from its ribonucleoprotein consensus sequence.

1994 ◽  
Vol 14 (4) ◽  
pp. 2307-2316 ◽  
Author(s):  
N Méthot ◽  
A Pause ◽  
J W Hershey ◽  
N Sonenberg
Keyword(s):  
Translation Initiation ◽  
Rna Binding ◽  
Consensus Sequence ◽  
Point Mutations ◽  
Translation Initiation Factor ◽  
Initiation Factor ◽  
Rna Recognition Motif ◽  
Helicase Activity ◽  
Binding Region ◽  
Stimulation Of

eIF-4B is a eukaryotic translation initiation factor that is required for the binding of ribosomes to mRNAs and the stimulation of the helicase activity of eIF-4A. It is an RNA-binding protein that contains a ribonucleoprotein consensus sequence (RNP-CS)/RNA recognition motif (RRM). We examined the effects of deletions and point mutations on the ability of eIF-4B to bind a random RNA, to cooperate with eIF-4A in RNA binding, and to enhance the helicase activity of eIF-4A. We report here that the RNP-CS/RRM alone is not sufficient for eIF-4B binding to RNA and that an RNA-binding region, located between amino acids 367 and 423, is the major contributor to RNA binding. Deletions which remove this region abolish the ability of eIF-4B to cooperate with eIF-4A in RNA binding and the ability to stimulate the helicase activity of eIF-4A. Point mutations in the RNP-CS/RRM had no effect on the ability of eIF-4B to cooperate with eIF-4A in RNA binding but significantly reduced the stimulation of eIF-4A helicase activity. Our results indicate that the carboxy-terminal RNA-binding region of eIF-4B is essential for eIF-4B function and is distinct from the RNP-CS/RRM.

scholarly journals Transcriptome maps of general eukaryotic RNA degradation factors

eLife ◽  
2019 ◽  
Vol 8 ◽  
Author(s):  
Salma Sohrabi-Jahromi ◽  
Katharina B Hofmann ◽  
Andrea Boltendahl ◽  
Christian Roth ◽  
Saskia Gressel ◽  
...  
Keyword(s):  
Rna Processing ◽  
Rna Binding ◽  
Global Analysis ◽  
Rna Degradation ◽  
Degradation Pathway ◽  
Yeast Saccharomyces Cerevisiae ◽  
Rate Limiting Step ◽  
Optimal Codons ◽  
Rate Limiting ◽  
Functional Rnas

RNA degradation pathways enable RNA processing, the regulation of RNA levels, and the surveillance of aberrant or poorly functional RNAs in cells. Here we provide transcriptome-wide RNA-binding profiles of 30 general RNA degradation factors in the yeast Saccharomyces cerevisiae. The profiles reveal the distribution of degradation factors between different RNA classes. They are consistent with the canonical degradation pathway for closed-loop forming mRNAs after deadenylation. Modeling based on mRNA half-lives suggests that most degradation factors bind intact mRNAs, whereas decapping factors are recruited only for mRNA degradation, consistent with decapping being a rate-limiting step. Decapping factors preferentially bind mRNAs with non-optimal codons, consistent with rapid degradation of inefficiently translated mRNAs. Global analysis suggests that the nuclear surveillance machinery, including the complexes Nrd1/Nab3 and TRAMP4, targets aberrant nuclear RNAs and processes snoRNAs.

scholarly journals Cancer-associated mRNAs regulated by the Helix-Loop-Helix motif of human EIF3A

2018 ◽  
Author(s):  
Marina Volegova ◽  
Jamie H.D. Cate
Keyword(s):  
Translation Initiation ◽  
Rna Binding ◽  
Translation Initiation Factor ◽  
Initiation Factor ◽  
Binding Motif ◽  
Entry Site ◽  
Internal Ribosome Entry ◽  
Helix Loop Helix ◽  
Small Set

AbstractImproper regulation of translation initiation, a vital check-point of protein synthesis in the cell, has been linked to a number of cancers. Overexpression of protein subunits of eukaryotic translation initiation factor 3 (eIF3) has been associated with increased translation of mRNAs involved in cell proliferation. In addition to playing a major role in general translation initiation by serving as a scaffold for the assembly of translation initiation complexes, eIF3 regulates translation of specific cellular mRNAs and viral RNAs. Mutations in the N-terminal Helix-Loop-Helix (HLH) RNA-binding motif of the EIF3A subunit in eIF3 interfere with Hepatitis C Virus Internal Ribosome Entry Site (IRES) mediated translation initiationin vitro. Here we show that the EIF3A HLH motif controls translation of a small set of cellular transcripts enriched in oncogenic mRNAs, includingMYC. We also demonstrate that the HLH motif of EIF3A acts specifically on the 5’-UTR ofMYCmRNA and modulates the function of EIF4A1 on select transcripts during translation initiation. In Ramos lymphoma cell lines, which are dependent on MYC overexpression, mutations in the HLH motif greatly reduce MYC expression, impede proliferation and sensitize cells to anti-cancer compounds. These results reveal the potential of the EIF3A HLH motif in eIF3 as a promising chemotherapeutic target.SummaryThe Helix Loop Helix motif of EIF3A controls translation of a small set of oncogenic cellular transcripts, includingMYC, and modulates the function of translation initiation factor EIF4A1 during translation initiation on select mRNAs.

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