scholarly journals Crassoascoma gen. nov. (Lentitheciaceae, Pleosporales): Unrevealing Microfungi from the Qinghai-Tibet Plateau in China

Diversity ◽  
2021 ◽  
Vol 14 (1) ◽  
pp. 15
Author(s):  
Zuo-Peng Liu ◽  
Sheng-Nan Zhang ◽  
Ratchadawan Cheewangkoon ◽  
Qi Zhao ◽  
Jian-Kui Liu
Keyword(s):  
Woody Plants ◽  
New Genus ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Tibet Plateau ◽  
Monophyletic Clade ◽  
Mucilaginous Sheath ◽  
Sister Clade ◽  
Distinct Lineage ◽  
Qinghai Tibet Plateau

Microfungi associated with woody plants on the Qinghai–Tibet Plateau (QTP) were investigated, and four collections associated with Potentilla fruticosa were obtained from Gansu and Qinghai provinces in China. Morphologically, they line well with Lentitheciaceae in having subglobose to globose ascomata with brown setae on the papilla but can be distinguished from other genera by its superficial, globose, black, thick-walled ascomata, and fusiform, hyaline (rarely pale brown), one-septate ascospores, surrounded by an entire mucilaginous sheath. The phylogenetic analyses based on a combined SSU, ITS, LSU and TEF1-α sequence data showed that four isolates formed a monophyletic clade among the genera of Lentitheciaceae, and present as a distinct lineage (sister clade to Darksidea). Therefore, we introduce a new genus Crassoascoma, with C. potentillae as the type to accommodate these taxa. Detailed description and illustration are provided, and the establishment of new taxa is justified with morphology and phylogenetic evidence.

scholarly journals Ligninsphaeria jonesii gen. et. sp. nov., a remarkable bamboo inhabiting ascomycete

Phytotaxa ◽  
2016 ◽  
Vol 247 (2) ◽  
pp. 109 ◽  
Author(s):  
JIN-FENG ZHANG ◽  
JIAN-KUI LIU ◽  
KEVIN D. HYDE ◽  
YONG-XIANG LIU ◽  
ALI H. BAHKALI ◽  
...  
Keyword(s):  
New Genus ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Morphological Characters ◽  
Molecular Evidence ◽  
New Taxon ◽  
Monophyletic Clade ◽  
Incertae Sedis ◽  
Distinct Lineage

A new ascomycete species, inhabiting decaying bamboo culms, is introduced in this paper based on morphology and molecular evidence. Analyses of partial LSU sequence data place the taxon in a monophyletic clade within the order Pleosporales. Morphological characters of the taxon are also distinct from other members of Pleosporales. Ligninsphaeria jonesii gen. et sp. nov. is therefore introduced to accommodate the new taxon, which is characterized by its clypeate, scattered, deeply immersed ascomata, with a slit-like opening, long ostioles, cellular pseudoparaphyses, clavate asci containing broad-fusiform and 1-septate ascospores surrounded by a gelatinous cap at both ends. The phylogenetic analyses show that the new taxon is phylogenetically close but distinct from the families Amniculicolaceae and Testudinaceae, and forms a distinct clade from other taxa in Pleosporales. The new taxon is described and compared with similar taxa. A new genus Ligninsphaeria (Pleosporales, incertae sedis) is introduced to accommodate this distinct lineage.

Tremateia murispora sp. nov. (Didymosphaeriaceae, Pleosporales) from Guizhou, China

Phytotaxa ◽  
2019 ◽  
Vol 416 (1) ◽  
pp. 79-87 ◽  
Author(s):  
YAO FENG ◽  
SHENG-NAN ZHANG ◽  
ZUO-YI LIU
Keyword(s):  
New Species ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Monophyletic Clade ◽  
Distinct Lineage ◽  
A New Species

An Ascomycetous species was found from decaying woody stems in Guizhou, China. Morphologically, the fungus can be assigned well in Tremateia in having immersed ascomata, cellular pseudoparaphyses and muriform ascospores, but it differs from other species in having the 3–7 transverse septa ascospores surrounded by a gelatinous sheath. Phylogenetic analyses based on a concatenated dataset of ITS, LSU, SSUand TEF1-α sequence data indicated that the fungus belongs to the genus Tremateia, Didymosphaeriaceae, four taxa formed a monophyletic clade and represent the genus Tremateia with well supported. The new collection formed a distinct lineage and can be recognized as a new species. Therefore, a new species Tremateia murispora is introduced with detailed description and illustration, the notes on its morphologically and phylogenetically related taxa is provided.

scholarly journals Striatiguttulaceae, a new pleosporalean family to accommodate Longicorpus and Striatiguttula gen. nov. from palms

MycoKeys ◽  
2019 ◽  
Vol 49 ◽  
pp. 99-129 ◽  
Author(s):  
Sheng-Nan Zhang ◽  
Kevin D. Hyde ◽  
E.B. Gareth Jones ◽  
Rajesh Jeewon ◽  
Ratchadawan Cheewangkoon ◽  
...  
Keyword(s):  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Divergence Time ◽  
New Combination ◽  
Monophyletic Clade ◽  
Vast Array ◽  
Dna Sequence Data ◽  
Divergence Time Estimates ◽  
Mucilaginous Sheath ◽  
Time Estimates

Palms represent the most morphological diverse monocotyledonous plants and support a vast array of fungi. Recent examinations of palmicolous fungi in Thailand led to the discovery of a group of morphologically similar and interesting taxa. A polyphasic approach based on morphology, multi-gene phylogenetic analyses and divergence time estimates supports the establishment of a novel pleosporalean family Striatiguttulaceae, which diversified approximately 39 (20–63) MYA (crown age) and 60 (35–91) MYA (stem age). Striatiguttulaceae is characterized by stromata or ascomata with a short to long neck, trabeculate pseudoparaphyses and fusiform to ellipsoidal, 1–3-septate ascospores, with longitudinal striations and paler end cells, surrounded by a mucilaginous sheath. Multi-gene phylogenetic analysis showed that taxa of Striatiguttulaceae form a well-supported and distinct monophyletic clade in Pleosporales, and related to Ligninsphaeriaceae and Pseudoastrosphaeriellaceae. However, these families can be morphologically demarcated by the slit-like ascomata and extremely large ascospores in Ligninsphaeriaceae and the rather narrow fusiform ascospores in Pseudoastrosphaeriellaceae. Eight strains of Striatiguttulaceae formed two monophyletic sub-clades, which can be recognized as Longicorpusgen. nov. and Striatiguttulagen. nov. Morphologically, the genus Longicorpus can be differentiated from Striatiguttula by its elongated immersed ascomata and fusiform ascospores with relatively larger middle cells and paler end cells. Two new species Striatiguttulanypae and S.phoenicis, and one new combination, Longicorpusstriataspora are introduced with morphological details, and phylogenetic relationships are discussed based on DNA sequence data.

Hyaloterminalis, a novel genus of Coryneaceae in order Diaporthales 

Phytotaxa ◽  
2020 ◽  
Vol 474 (2) ◽  
pp. 132-144
Author(s):  
ACHALA R. RATHNAYAKA ◽  
DHANUSHKA N. WANASINGHE ◽  
MONIKA C. DAYARATHNE ◽  
K.W. THILINI CHETHANA ◽  
D. JAYARAMA BHAT ◽  
...  
Keyword(s):  
Type Strain ◽  
New Genus ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Apical Cell ◽  
New Taxon ◽  
Basal Cells ◽  
Morphological Similarity ◽  
Distinct Genus ◽  
Distinct Lineage

The dematiaceous coelomycete Hyaloterminalis alishanensis gen. et sp. nov. (Coryneaceae, Diaporthales, Sordariomycetes) is introduced in this paper. It was isolated from dead branches of Cerasus sp. from the Ali Mountain, Taiwan. Coryneum was previously the only genus in Coryneaceae, and morphological similarity of Hyaloterminalis with the type genus is limited to broadly fusiform, brown conidia. Hyaloterminalis differs from Coryneum in having pycnidial conidiomata, persistent paraphyses and conidiophore morphology, with a long narrow hyaline tip to the apical cell and hyaline basal cells. Multigene phylogenetic analyses, using a combined LSU, ITS and TEF1-α sequence data generated from maximum likelihood, maximum parsimony and MrBayes analyses, confirmed that Hyaloterminalis forms a distinct lineage within Coryneaceae and its establishment as a new genus is well-supported. The new taxon is described, illustrated and compared with Coryneum. The ITS (MH861215) and LSU (MH872982) sequences obtained from the ex-type strain of Talekpea foeticia, confirm its status as a member in Coryneaceae. Therefore, Talekpea is accepted as a distinct genus in Coryneaceae.

Phylogeographic structure and gene flow of Himalayan snowcock (Tetraogallus himalayensis)

2010 ◽  
Vol 60 (4) ◽  
pp. 449-465
Author(s):  
Wen Longying ◽  
Zhang Lixun ◽  
An Bei ◽  
Luo Huaxing ◽  
Liu Naifa ◽  
...  
Keyword(s):  
Demographic History ◽  
Phylogenetic Analyses ◽  
Divergence Time ◽  
Population Expansion ◽  
Population History ◽  
Tibet Plateau ◽  
Phylogeographic Structure ◽  
Mitochondrial Cytochrome B ◽  
History Of ◽  
Qinghai Tibet Plateau

AbstractWe have used phylogeographic methods to investigate the genetic structure and population history of the endangered Himalayan snowcock (Tetraogallus himalayensis) in northwestern China. The mitochondrial cytochrome b gene was sequenced of 102 individuals sampled throughout the distribution range. In total, we found 26 different haplotypes defined by 28 polymorphic sites. Phylogenetic analyses indicated that the samples were divided into two major haplogroups corresponding to one western and one eastern clade. The divergence time between these major clades was estimated to be approximately one million years. An analysis of molecular variance showed that 40% of the total genetic variability was found within local populations, 12% among populations within regional groups and 48% among groups. An analysis of the demographic history of the populations suggested that major expansions have occurred in the Himalayan snowcock populations and these correlate mainly with the first and the second largest glaciations during the Pleistocene. In addition, the data indicate that there was a population expansion of the Tianshan population during the uplift of the Qinghai-Tibet Plateau, approximately 2 million years ago.

Apertochrysa (Neuroptera: Chrysopidae): A heterogeneric phantom? 

Zootaxa ◽  
2017 ◽  
Vol 4238 (1) ◽  
pp. 58 ◽  
Author(s):  
ATSUSHI MOCHIZUKI ◽  
CHARLES S. HENRY ◽  
PETER DUELLI
Keyword(s):  
Type Species ◽  
Morphological Traits ◽  
New Genus ◽  
Sequence Data ◽  
New Combination ◽  
Wing Venation ◽  
Monophyletic Clade ◽  
Molecular Sequence Data ◽  
Molecular Sequence ◽  
Group Relationships

The small lacewing genus Apertochrysa comprises species from Africa, Asia and Australia. All lack a tignum, but otherwise resemble distantly related genera. We show that Apertochrysa does not form a monophyletic clade, based on analyses of molecular sequence data and morphological traits such as the presence and shape of the male gonapsis, wing venation, and larval setae. Apertochrysa kichijoi forms a clade with Eremochrysa, Suarius and Chrysemosa, whereas A. albolineatoides belongs to a clade that includes Cunctochrysa. Apertochrysa albolineatoides should become a new combination as Cunctochrysa albolineatoides, while A. kichijoi will have to be transferred to a new genus. The Australian A. edwardsi, the African A. eurydera and the type species of the genus Apertochrysa, A. umbrosa, join the large Pseudomallada group. Relationships of A. umbrosa are less certain, because for it we could amplify only one of the three nuclear genes used in the overall analysis. However, in all morphological traits tested, that species strongly resembles A. edwardsi and A. eurydera and thus is very likely just another exceptional Pseudomallada lacking a tignum. The fate of the genus name Apertochrysa depends on additional molecular and morphological analyses of A. umbrosa. 

Actinomyces marmotae sp. nov. and Actinomyces procaprae sp. nov. isolated from wild animals and reclassification of Actinomyces liubingyangii and Actinomyces tangfeifanii as Boudabousia liubingyangii comb. nov. and Boudabousia tangfeifanii comb. nov., respectively

2019 ◽  
Vol 71 (3) ◽  
Author(s):  
Caixin Yang ◽  
Yibo Bai ◽  
Kui Dong ◽  
Jing Yang ◽  
Xin-He Lai ◽  
...  
Keyword(s):  
Type Species ◽  
Phylogenetic Analyses ◽  
Brain Heart Infusion ◽  
Tibet Plateau ◽  
Rrna Gene ◽  
Bacterial Strains ◽  
Content Type ◽  
Link Type ◽  
Pr China ◽  
Qinghai Tibet Plateau

Four Gram-stain-positive, catalase-negative, non-spore-forming, rod-shaped bacterial strains (zg-325T, zg329, dk561T and dk752) were isolated from the respiratory tract of marmot (Marmota himalayana) and the faeces of Tibetan gazelle (Procapra picticaudata) from the Qinghai-Tibet Plateau of PR China. The results of 16S rRNA gene sequence-based phylogenetic analyses indicated that strains zg-325T and dk561T represent members of the genus Actinomyces , most similar to Actinomyces denticolens DSM 20671T and Actinomyces ruminicola B71T, respectively. The DNA G+C contents of strains zg-325T and dk561T were 71.6 and 69.3 mol%, respectively. The digital DNA–DNA hybridization values of strains zg-325T and dk561T with their most closely related species were below the 70 % threshold for species demarcation. The four strains grew best at 35 °C in air containing 5 % CO2 on brain heart infusion (BHI) agar with 5 % sheep blood. All four strains had C18:1ω9c and C16:0 as the major cellular fatty acids. MK-8 and MK-9 were the major menaquinones in zg-325T while MK-10 was predominant in dk561T. The major polar lipids included diphosphatidylglycerol and phosphatidylinositol. On the basis of several lines of evidence from phenotypic and phylogenetic analyses, zg-325T and dk561T represent novel species of the genus Actinomyces , for which the name Actinomyces marmotae sp. nov. and Actinomyces procaprae sp. nov. are proposed. The type strains are zg-325T (=GDMCC 1.1724T=JCM 34091T) and dk561T (=CGMCC 4.7566T=JCM 33484T). We also propose, on the basis of the phylogenetic results herein, the reclassification of Actinomyces liubingyangii and Actinomyces tangfeifanii as Boudabousia liubingyangii comb. nov. and Boudabousia tangfeifanii comb. nov., respectively.

A molecular phylogenetic and DNA barcode assessment of the tribe Pterosiphonieae (Ceramiales, Rhodophyta) emphasizing the Northeast Pacific

Botany ◽  
2016 ◽  
Vol 94 (10) ◽  
pp. 917-939 ◽  
Author(s):  
Amanda M. Savoie ◽  
Gary W. Saunders
Keyword(s):  
South African ◽  
North American ◽  
New Genus ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Dna Barcode ◽  
Sensu Stricto ◽  
North American Species ◽  
African Species ◽  
Molecular Phylogenetic

Sequence data (COI-5P and rbcL) for North American members of the tribe Pterosiphonieae were compared with collections from around the world. Phylogenetic analyses resolved Pterosiphonia as polyphyletic and many species required transfer to other genera. In our analyses Pterosiphonia sensu stricto included only the type species P. cloiophylla (C. Agardh) Falkenberg and P. complanata (Clemente) Falkenberg, as well as the South African species P. stegengae sp. nov. A new genus, Xiphosiphonia gen. nov., was described for X. ardreana (Maggs & Hommersand) comb. nov., X. pennata (C. Agardh) comb. nov., and X. pinnulata (Kützing) comb. nov. Some Asian, European and North American species previously attributed to Pterosiphonia were transferred to Symphyocladia including S. baileyi (Harvey) comb. nov., S. dendroidea (Montagne) comb. nov., S. plumosa nom. nov. (for P. gracilis Kylin), and S. tanakae (S. Uwai & M. Masuda) comb. nov. We also described two new North American species, Symphyocladia brevicaulis sp. nov. and S. rosea sp. nov. Other species formed a well-supported clade for which the genus name Polyostea Ruprecht was resurrected. Included in Polyostea were P. arctica (J. Agardh) comb. nov., P. bipinnata (Postels & Ruprecht) Ruprecht, P. hamata (E.S. Sinova) comb. nov., and P. robusta (N.L. Gardner) comb. nov.

Mimaporia, a new genus of Epicopeiidae (Lepidoptera), with description of a new species from Vietnam

Zootaxa ◽  
2017 ◽  
Vol 4254 (5) ◽  
pp. 537 ◽  
Author(s):  
CHIA-HSUAN WEI ◽  
SHEN-HORN YEN
Keyword(s):  
New Species ◽  
New Genus ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Taxonomic Status ◽  
Sister Group ◽  
Morphological Evidence ◽  
New Taxon ◽  
The Family ◽  
A New Species

The Epicopeiidae is a small geometroid family distributed in the East Palaearctic and Oriental regions. It exhibits high morphological diversity in body size and wing shape, while their wing patterns involve in various complex mimicry rings. In the present study, we attempted to describe a new genus, and a new species from Vietnam, with comments on two assumed congeneric novel species from China and India. To address its phylogenetic affinity, we reconstructed the phylogeny of the family by using sequence data of COI, EF-1α, and 28S gene regions obtained from seven genera of Epicopeiidae with Pseudobiston pinratanai as the outgroup. We also compared the morphology of the new taxon to other epicopeiid genera to affirm its taxonomic status. The results suggest that the undescribed taxon deserve a new genus, namely Mimaporia gen. n. The species from Vietnam, Mimaporia hmong sp. n., is described as new to science. Under different tree building strategies, the new genus is the sister group of either Chatamla Moore, 1881 or Parabraxas Leech, 1897. The morphological evidence, which was not included in phylogenetic analyses, however, suggests its potential affinity with Burmeia Minet, 2003. This study also provides the first, although preliminary, molecular phylogeny of the family on which the revised systematics and interpretation of character evolution can be based. 

scholarly journals Redescription, Morphogenesis, and Molecular Phylogeny of Pseudosincirra longicirrata nov. comb., With Establishment of a New Genus Pseudosincirra nov. gen. (Ciliophora, Hypotrichia)

2021 ◽  
Vol 12 ◽  
Author(s):  
Qi Gao ◽  
Chen Shao ◽  
Qiuyue Tang ◽  
Jingbao Li
Keyword(s):  
Molecular Phylogeny ◽  
New Genus ◽  
Sequence Data ◽  
Southern China ◽  
Phylogenetic Analyses ◽  
Small Subunit ◽  
Ssu Rdna ◽  
Original Population ◽  
The Family ◽  
Rdna Sequence Data

The morphology and morphogenesis of Pseudosincirra longicirrata nov. gen. and nov. comb., isolated from southern China, were investigated with living observation and protargol staining. Our population is similar to the original population in living characteristics and ciliary patterns. The main determinable morphogenetic features of P. longicirrata nov. comb. are the presence of five frontoventral-transverse cirral anlagen (FVT-anlagen) and a dorsomarginal kinety anlage. According to the origin of FVT-anlagen IV and V in proter, it can be determined that P. longicirrata nov. comb. possesses two frontoventral rows and one right marginal row. Hence, a new genus, Pseudosincirra nov. gen., is proposed, and the diagnosis of P. longicirrata nov. comb. is improved. The new genus is diagnosed as follows: adoral zone of membranelles and undulating membranes is in a Gonostomum pattern; there are three enlarged frontal cirri, one buccal cirrus, and one parabuccal cirrus; postperistomial cirrus and transverse cirri are lacking; there are two more or less long frontoventral rows and one right and two or more left marginal rows; cirri within all rows very widely spaced; dorsal kinety pattern is of Urosomoida type, that is, three dorsal kineties and one dorsomarginal kinety; and caudal cirri are present. Phylogenetic analyses based on the small subunit ribosomal (SSU rDNA) sequence data indicate that P. longicirrata nov. comb. clusters with Deviata and Perisincirra. It is considered that Pseudosincirra nov. gen. and Perisincirra paucicirrata should be assigned to the family Deviatidae; fine cirri, and cirri within all rows being relatively widely spaced, should be considered as plesiomorphies of Deviatidae; and Deviatidae is closely related to Dorsomarginalia or Strongylidium–Hemiamphisiella–Pseudouroleptus.

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