scholarly journals Multi-Locus Phylogenetic Analyses of the Almadablennius Clade Reveals Inconsistencies with the Present Taxonomy of Blenniid Fishes

Diversity ◽  
2022 ◽  
Vol 14 (1) ◽  
pp. 53
Author(s):  
Luca Vecchioni ◽  
Andrew C. Ching ◽  
Federico Marrone ◽  
Marco Arculeo ◽  
Peter J. Hundt ◽  
...  
Keyword(s):  
Genetic Differentiation ◽  
Phylogenetic Relationship ◽  
Phylogenetic Trees ◽  
New Genus ◽  
Nuclear Dna ◽  
Phylogenetic Analyses ◽  
Dna Fragments

We used a multi-locus phylogenetic approach (i.e., combining both mitochondrial and nuclear DNA fragments) to address some long-standing taxonomic inconsistencies within the diverse fish clade of Combtooth Blennies (Blenniidae—unranked clade Almadablennius). The obtained phylogenetic trees revealed some major inconsistencies in the current taxonomy of Parablennini, such as the paraphyletic status of the Salaria and Parablennius genera, casting some doubt regarding their actual phylogenetic relationship. Furthermore, a scarce-to-absent genetic differentiation was observed among the three species belonging to the genus Chasmodes. This study provides an updated taxonomy and phylogeny of the former genus Salaria, ascribing some species to the new genus Salariopsis gen. nov., and emphasizes the need for a revision of the genus Parablennius.

scholarly journals Pseudodidymosphaeria gen. nov. in Massarinaceae

Phytotaxa ◽  
2015 ◽  
Vol 231 (3) ◽  
pp. 271 ◽  
Author(s):  
Kasun Madhusanka Thambugala ◽  
YU CHUNFANG ◽  
ERIO CAMPORESI ◽  
ALI H. BAHKALI ◽  
ZUO YI LIU ◽  
...  
Keyword(s):  
Maximum Likelihood ◽  
Molecular Phylogeny ◽  
Bayesian Analysis ◽  
Phylogenetic Trees ◽  
New Genus ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
New Taxon ◽  
Asexual Morph ◽  
Spartium Junceum

Didymosphaeria spartii was collected from dead branches of Spartium junceum in Italy. Multi-gene phylogenetic analyses of ITS, 18S and 28S nrDNA sequence data were carried out using maximum likelihood and Bayesian analysis. The resulting phylogenetic trees showed this to be a new genus in a well-supported clade in Massarinaceae. A new genus Pseudodidymosphaeria is therefore introduced to accommodate this species based on molecular phylogeny and morphology. A illustrated account is provided for the new genus with its asexual morph and the new taxon is compared with Massarina and Didymosphaeria.

Tziminema unachin. gen., n. sp. (Nematoda: Strongylidae: Strongylinae) parasite of Baird's tapirTapirus bairdiifrom Mexico

2017 ◽  
Vol 92 (6) ◽  
pp. 752-759 ◽  
Author(s):  
D.M. Güiris-Andrade ◽  
A. Oceguera-Figueroa ◽  
D. Osorio-Sarabia ◽  
M.E. Pérez-Escobar ◽  
M.G. Nieto-López ◽  
...  
Keyword(s):  
Dna Sequences ◽  
Internal Transcribed Spacer ◽  
New Genus ◽  
Nuclear Dna ◽  
External Surface ◽  
Phylogenetic Analyses ◽  
Buccal Capsule ◽  
Partial Sequence ◽  
New Taxon ◽  
New Genus And Species

AbstractA new genus and species of nematode,Tziminema unachin. gen., n. sp. is described from the caecum and colon of Baird's tapirTapirus bairdii(Gill, 1865), found dead in the Reserva de la Biósfera El Triunfo, Chiapas State, in the Neotropical realm of Mexico.Tzimineman. gen. differs from the other nine genera included in the Strongylinae by two main characteristics: having 7–9 posteriorly directed tooth-like structures at the anterior end of the buccal capsule, and the external surface of the buccal capsule being heavily striated. Phylogenetic analyses of the DNA sequences of the mitochondrial cytochromecoxidase and nuclear DNA, including a partial sequence of the internal transcribed spacer 1, 5.8S and a partial sequence of the internal transcribed spacer 2 of the new taxon, confirmed its inclusion in Strongylinae and its rank as a new genus.

scholarly journals Beginning the quest: phylogenetic hypothesis and identification of evolutionary lineages in bats of the genus Micronycteris (Chiroptera, Phyllostomidae)

ZooKeys ◽  
2021 ◽  
Vol 1028 ◽  
pp. 135-159
Author(s):  
Darwin M. Morales-Martínez ◽  
Hugo F. López-Arévalo ◽  
Mario Vargas-Ramírez
Keyword(s):  
Nuclear Dna ◽  
Phylogenetic Analyses ◽  
Sister Taxon ◽  
Dna Fragments ◽  
Phylogenetic Hypothesis ◽  
Evolutionary Processes ◽  
Candidate Species ◽  
Neotropical Bats ◽  
Genetic Sequences ◽  
Evolutionary Lineages

Thirteen species of Neotropical bats of the genus Micronycteris are currently recognized and are allocated to four subgenera Leuconycteris, Micronycteris, Schizonycteris, and Xenonectes. Despite that, the presence of polyphyletic clades in molecular phylogenies suggests that its diversity is underestimated. Additionally, the incorrect identification of some genetic sequences, the incorrect assignation of available valid names, and restricted geographic sampling have biased the identification of independently evolutionary lineages within Micronycteris. In this study, several unknown genealogical lineages in the genus are identified and an updated phylogenetic hypothesis is proposed using mitochondrial and nuclear DNA fragments. The phylogenetic analyses congruently showed all individuals in four well-supported subgenera, but M. schmidtorum was revealed as the sister taxon of M. brosseti in the subgenus Leuconycteris. Twenty-seven different genealogical lineages were identified. These included eight confirmed species: M. brosseti, M. buriri, M. giovanniae, M. matses, M. schmidtorum, M. simmonsae, M. tresamici, and M. yatesi. Nineteen either allopatric or parapatric candidate species were also confirmed, two within the M. hirsuta complex, nine within the M. megalotis complex, seven within the M. minuta complex, and one corresponding to “M. sp.”. These results revealed an extensive undescribed diversity within each subgenus of Micronycteris. Nevertheless, the evolutionary processes associated with the specific radiations are poorly understood. This is just the beginning of the assessment of the taxonomy and systematics of Micronycteris, which requires additional integrative taxonomical approaches for its advance.

scholarly journals Ontogeny and Phylogeny of a New Hypotrichous Ciliate (Protista, Ciliophora), Metaurostylopsis alrasheidi n. sp., With Establishment of a New Genus Monourostylopsis n. gen.

2020 ◽  
Vol 7 ◽  
Author(s):  
Wenya Song ◽  
Yu Qiao ◽  
Jingyi Dong ◽  
William A. Bourland ◽  
Tengteng Zhang ◽  
...  
Keyword(s):  
New Species ◽  
Phylogenetic Trees ◽  
New Genus ◽  
De Novo ◽  
Phylogenetic Analyses ◽  
New Combination ◽  
Cortical Granules ◽  
Full Support ◽  
Left And Right ◽  
A New Species

In the present study, based on both morphologic and phylogenetic analyses, a new genus, Monourostylopsis n. gen., and new species, Metaurostylopsis alrasheidi n. sp. as well as a new combination, Monourostylopsis antarctica (Jung et al., 2011) n. comb. (original combination: Metaurostylopsis antarcticaJung et al., 2011), are suggested. The new genus is diagnosed mainly by having three or more frontoterminal cirri, a midventral complex with midventral pairs and a single midventral row, one right marginal row and two or more left marginal rows. The new genus can be easily separated from the morphologically similar genera mainly by having single right marginal row (vs. two or more right marginal rows). Based on live observation and protargol staining, the morphology and morphogenesis of a new species, M. alrasheidi n. sp. isolated from China, were investigated. The new species can be characterized by: two types of cortical granules; about 22 adoral membranelles; three or four frontoterminal, four or five transverse cirri; about eight midventral pairs and a midventral row of three or four unpaired midventral cirri; three or four left and right marginal rows. The main morphogenetic features of Metaurostylopsis alrasheidi n. sp. can be summarized as: (1) the entire parental ciliature, including the oral apparatus, is renewed; (2) the oral primordium of the proter probably originates within a pouch; (3) the oral primordium of the opisthe forms de novo on the cell surface; (4) the anlagen of marginal rows and dorsal kineties are formed intrakinetally, and (5) the fusion of macronuclear nodules results in an irregular branched mass prior to karyokinesis. In the phylogenetic trees, all the available Metaurostylopsis sequences cluster together in a clade with full support (ML/BI: 100/1.00) revealing that the genus is monophyletic within the large group of core urostylids.

scholarly journals Integrative taxonomy and molecular phylogeny of three poorly known tintinnine ciliates, with the establishment of a new genus (Protista; Ciliophora; Oligotrichea)

2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Rui Wang ◽  
Yang Bai ◽  
Tao Hu ◽  
Dapeng Xu ◽  
Toshikazu Suzuki ◽  
...  
Keyword(s):  
Phylogenetic Trees ◽  
New Genus ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Molecular Data ◽  
Integrative Taxonomy ◽  
Habitat Characteristics ◽  
Lsu Rdna ◽  
Molecular Phylogenetic ◽  
Ciliary Tuft

Abstract Background The taxonomic classification of the suborder Tintinnina Kofoid & Campbell, 1929, a species-rich group of planktonic ciliated protistans with a characteristic lorica, has long been ambiguous largely due to the lack of cytological and molecular data for most species. Tintinnopsis is the largest, most widespread, and most taxonomically complex genus within this group with about 170 species occurring in nearshore waters. Previous molecular phylogenetic studies have revealed that Tintinnopsis is polyphyletic. Results Here we document the live morphology, infraciliature, gene sequences, and habitat characteristics of three poorly known tintinnine species, viz. Tintinnopsis karajacensis Brandt, 1896, Tintinnopsis gracilis Kofoid & Campbell, 1929, and Tintinnopsis tocantinensis Kofoid & Campbell, 1929, isolated from the coastal waters of China. Based on a unique cytological feature (i.e., an elongated ciliary tuft with densely arranged kinetids) in the former two species, Antetintinnopsis gen. nov. is erected with Antetintinnopsis hemispiralis (Yin, 1956) comb. nov. (original combination: Tintinnopsis hemispiralis Yin, 1956) designated as the type species. Moreover, A. karajacensis (Brandt, 1896) comb. nov. (original combination: Tintinnopsis karajacensis Brandt, 1896) and A. gracilis (Kofoid & Campbell, 1929) comb. nov. (original combination: Tintinnopsis gracilis Kofoid & Campbell, 1929) are placed in a highly supported clade that branches separately from Tintinnopsis clades in phylogenetic trees based on SSU rDNA and LSU rDNA sequence data, thus supporting the establishment of the new genus. One other species is assigned to Antetintinnopsis gen. nov., namely A. subacuta (Jörgensen, 1899) comb. nov. (original combination Tintinnopsis subacuta Jörgensen, 1899). Conclusions The findings of the phylogenetic analyses support the assertion that cytological characters are taxonomically informative for tintinnines. This study also contributes to the broadening of our understanding of the tintinnine biodiversity and evolution.

Neanderthals and modern humans

2017 ◽  
Author(s):  
Francisco J. Ayala ◽  
Camilo J. Cela-Conde
Keyword(s):  
Genetic Differentiation ◽  
Nuclear Dna ◽  
Homo Sapiens ◽  
Whole Genome ◽  
Upper Palaeolithic ◽  
Modern Humans ◽  
Homo Neanderthalensis ◽  
Modern Mind ◽  
Similarities And Differences ◽  
Mode 3

This chapter deals with the similarities and differences between Homo neanderthalensis and Homo sapiens, by considering genetic, brain, and cognitive evidence. The genetic differentiation emerges from fossil genetic evidence obtained first from mtDNA and later from nuclear DNA. With high throughput whole genome sequencing, sequences have been obtained from the Denisova Cave (Siberia) fossils. Nuclear DNA of a third species (“Denisovans”) has been obtained from the same cave and used to define the phylogenetic relationships among the three species during the Upper Palaeolithic. Archaeological comparisons make it possible to advance a four-mode model of the evolution of symbolism. Neanderthals and modern humans would share a “modern mind” as defined up to Symbolic Mode 3. Whether the Neanderthals reached symbolic Mode 4 remains unsettled.

scholarly journals Global phylogeography of a pantropical mangrove genus Rhizophora

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Koji Takayama ◽  
Yoichi Tateishi ◽  
Tadashi Kajita
Keyword(s):  
Phylogenetic Trees ◽  
Nuclear Dna ◽  
Divergence Time ◽  
Long Distance ◽  
F1 Hybrid ◽  
The Pacific ◽  
Comprehensive Picture ◽  
Dated Phylogeny ◽  
Stochastic Mapping ◽  
Historical Scenario

AbstractRhizophora is a key genus for revealing the formation process of the pantropical distribution of mangroves. In this study, in order to fully understand the historical scenario of Rhizophora that achieved pantropical distribution, we conducted phylogeographic analyses based on nucleotide sequences of chloroplast and nuclear DNA as well as microsatellites for samples collected worldwide. Phylogenetic trees suggested the monophyly of each AEP and IWP lineages respectively except for R. samoensis and R. × selala. The divergence time between the two lineages was 10.6 million years ago on a dated phylogeny, and biogeographic stochastic mapping analyses supported these lineages separated following a vicariant event. These data suggested that the closure of the Tethys Seaway and the reduction in mangrove distribution followed by Mid-Miocene cooling were key factors that caused the linage diversification. Phylogeographic analyses also suggested the formation of the distinctive genetic structure at the AEP region across the American continents around Pliocene. Furthermore, long-distance trans-pacific dispersal occurred from the Pacific coast of American continents to the South Pacific and formed F1 hybrid, resulting in gene exchange between the IWP and AEP lineages after 11 million years of isolation. Considering the phylogeny and phylogeography with divergence time, a comprehensive picture of the historical scenario behind the pantropical distribution of Rhizophora is updated.

Asian Betylobraconinae (Hymenoptera, Braconidae), with description of a new genus and phylogenetic affinities of the tribe Facitorini

2008 ◽  
Vol 39 (2) ◽  
pp. 133-154 ◽  
Author(s):  
Alberto Sáez ◽  
Kaoru Maeto ◽  
Alejandro Zaldivar-Riverón ◽  
Sergey Belokobylskij
Keyword(s):  
New Species ◽  
Type Species ◽  
New Genus ◽  
Phylogenetic Analyses ◽  
28S Rrna ◽  
Asian Region ◽  
Molecular Phylogenetic ◽  
Phylogenetic Affinities ◽  
One New Species ◽  
Rrna Sequences

AbstractThe taxonomy of the Asian genera of the subfamily Betylobraconinae, a small and understudied group within the hymenopteran family Braconidae, is revised. A new genus exclusively from the Asian region, Asiabregma gen. nov., containing three species (A. ryukyuensis sp. nov. (type species, Japan and Malaya), A. makiharai sp. nov. (Japan) and A. sulaensis (van Achterberg), comb. nov. (Indonesia)) is described. One new species of Aulosaphobracon, A. striatus sp. nov. from Vietnam, and one of Facitorus, F. amamioshimus sp. nov. from Japan, are also described. Based on molecular phylogenetic analyses using COI mtDNA and 28S rRNA sequences, the three genera previously placed in the tribe Facitorini, Facitorus, Conobregma and Jannya, together with Asiabregma gen. nov., are transferred to the rogadine tribe Yeliconini.

Crocinoboletus, a new genus of Boletaceae (Boletales) with unusual boletocrocin polyene pigments 

Phytotaxa ◽  
2014 ◽  
Vol 175 (3) ◽  
pp. 133 ◽  
Author(s):  
Nian-Kai Zeng ◽  
Gang Wu ◽  
Yan-Chun Li ◽  
Zhi-Qun Liang ◽  
Zhu-Liang Yang
Keyword(s):  
New Genus ◽  
Phylogenetic Analyses ◽  
Middle Part ◽  
Line Drawings ◽  
Molecular Phylogenetic ◽  
Orange Color

Crocinoboletus is described as a new genus of Boletaceae to accommodate Boletus rufoaureus and B. laetissimus, characterized by its brilliant orange color of basidiomata caused by the presence of unusual boletocrocin polyene pigments, bluish olivaceous staining of all parts when bruised, smooth basidiospores, and the pileipellis which has an interwoven trichoderm at the middle part of the pileus and a cutis at the margin of the pileus. Prior molecular phylogenetic analyses also confirmed the two taxa are not members of the genus Boletus s.s., but form a well-supported generic lineage within Boletaceae. Consequently a description, color photos of fresh basidiomata, line-drawings of microstructures and a comparison of Crocinoboletus with allied taxa are presented.

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