scholarly journals Towards the Construction of a Gold Standard Biomedical Corpus for the Romanian Language

Data ◽  
2018 ◽  
Vol 3 (4) ◽  
pp. 53 ◽  
Author(s):  
Maria Mitrofan ◽  
Verginica Barbu Mititelu ◽  
Grigorina Mitrofan
Keyword(s):  
Language Processing ◽  
Gold Standard ◽  
Named Entity Recognition ◽  
Entity Recognition ◽  
Language Resources ◽  
Named Entities ◽  
Named Entity ◽  
Pos Tagging ◽  
Part Of Speech ◽  
Biomedical Named Entity Recognition

Gold standard corpora (GSCs) are essential for the supervised training and evaluation of systems that perform natural language processing (NLP) tasks. Currently, most of the resources used in biomedical NLP tasks are mainly in English. Little effort has been reported for other languages including Romanian and, thus, access to such language resources is poor. In this paper, we present the construction of the first morphologically and terminologically annotated biomedical corpus of the Romanian language (MoNERo), meant to serve as a gold standard for biomedical part-of-speech (POS) tagging and biomedical named entity recognition (bioNER). It contains 14,012 tokens distributed in three medical subdomains: cardiology, diabetes and endocrinology, extracted from books, journals and blogposts. In order to automatically annotate the corpus with POS tags, we used a Romanian tag set which has 715 labels, while diseases, anatomy, procedures and chemicals and drugs labels were manually annotated for bioNER with a Cohen Kappa coefficient of 92.8% and revealed the occurrence of 1877 medical named entities. The automatic annotation of the corpus has been manually checked. The corpus is publicly available and can be used to facilitate the development of NLP algorithms for the Romanian language.

scholarly journals A Comparison of Architectures and Pretraining Methods for Contextualized Multilingual Word Embeddings

2020 ◽  
Vol 34 (05) ◽  
pp. 9090-9097
Author(s):  
Niels Van der Heijden ◽  
Samira Abnar ◽  
Ekaterina Shutova
Keyword(s):  
Language Processing ◽  
State Of The Art ◽  
Named Entity Recognition ◽  
Entity Recognition ◽  
Word Embeddings ◽  
Named Entity ◽  
Pos Tagging ◽  
Part Of Speech ◽  
Joint Training ◽  
Comprehensive Comparison

The lack of annotated data in many languages is a well-known challenge within the field of multilingual natural language processing (NLP). Therefore, many recent studies focus on zero-shot transfer learning and joint training across languages to overcome data scarcity for low-resource languages. In this work we (i) perform a comprehensive comparison of state-of-the-art multilingual word and sentence encoders on the tasks of named entity recognition (NER) and part of speech (POS) tagging; and (ii) propose a new method for creating multilingual contextualized word embeddings, compare it to multiple baselines and show that it performs at or above state-of-the-art level in zero-shot transfer settings. Finally, we show that our method allows for better knowledge sharing across languages in a joint training setting.

South China Sea Conflicts Classification Using Named Entity Recognition (NER) and Part-of-Speech (POS) Tagging

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Nur Rafeeqkha Sulaiman ◽  
Maheyzah Md Siraj
Keyword(s):  
South China Sea ◽  
Language Processing ◽  
South China ◽  
Named Entity Recognition ◽  
Online News ◽  
Entity Recognition ◽  
China Sea ◽  
Named Entity ◽  
Pos Tagging ◽  
Part Of Speech

Internet connects everyone to everything globally. The existence of Internet eases people in completing daily tasks. Thanks to Internet, information is being digitalized and spread openly to the public. Online news articles not only provide us with useful and reliable information and reports, it also eases information extraction and gathering for research purposes especially in Natural Language Processing (NLP) and Machine Learning (ML). The topics regarding the South China Sea have been popular lately due to the rise of conflicts between several countries claim on the islands in the sea. Gathering data through Internet and online sources proves to be easy, but to process a huge amount data and to identify only useful information manually takes a longer time to complete. Extracting important features from a text document can be done by using one or a combination of feature extraction methods. Relevant information and the classification of news articles in relation to the conflicts in South China Sea need to be done. In this paper, a model is proposed to use Named Entity Recognition (NER) that search for and classifies important information regarding to the conflicts. In order to do that, a combination of Part-of-Speech (POS) and NER are needed to extract type of conflicts from the news.  This study also claims to classify news by using Conditional Random Field (CRF) algorithm and Multinomial Naïve Bayes (MNB) as classification methods by training and testing the data. 

scholarly journals An Annotated Corpus of Crime-Related Portuguese Documents for NLP and Machine Learning Processing

Data ◽  
2021 ◽  
Vol 6 (7) ◽  
pp. 71
Author(s):  
Gonçalo Carnaz ◽  
Mário Antunes ◽  
Vitor Beires Nogueira
Keyword(s):  
Machine Learning ◽  
Language Processing ◽  
Named Entity Recognition ◽  
Entity Recognition ◽  
Automatic Identification ◽  
Named Entities ◽  
Related Data ◽  
Named Entity ◽  
Chain Of Custody ◽  
Evidence Collection

Criminal investigations collect and analyze the facts related to a crime, from which the investigators can deduce evidence to be used in court. It is a multidisciplinary and applied science, which includes interviews, interrogations, evidence collection, preservation of the chain of custody, and other methods and techniques of investigation. These techniques produce both digital and paper documents that have to be carefully analyzed to identify correlations and interactions among suspects, places, license plates, and other entities that are mentioned in the investigation. The computerized processing of these documents is a helping hand to the criminal investigation, as it allows the automatic identification of entities and their relations, being some of which difficult to identify manually. There exists a wide set of dedicated tools, but they have a major limitation: they are unable to process criminal reports in the Portuguese language, as an annotated corpus for that purpose does not exist. This paper presents an annotated corpus, composed of a collection of anonymized crime-related documents, which were extracted from official and open sources. The dataset was produced as the result of an exploratory initiative to collect crime-related data from websites and conditioned-access police reports. The dataset was evaluated and a mean precision of 0.808, recall of 0.722, and F1-score of 0.733 were obtained with the classification of the annotated named-entities present in the crime-related documents. This corpus can be employed to benchmark Machine Learning (ML) and Natural Language Processing (NLP) methods and tools to detect and correlate entities in the documents. Some examples are sentence detection, named-entity recognition, and identification of terms related to the criminal domain.

scholarly journals A Survey of Arabic Named Entity Recognition and Classification

2014 ◽  
Vol 40 (2) ◽  
pp. 469-510 ◽  
Author(s):  
Khaled Shaalan
Keyword(s):  
Language Processing ◽  
Named Entity Recognition ◽  
Relevant Information ◽  
Arabic Language ◽  
Entity Recognition ◽  
Named Entities ◽  
Linguistic Resources ◽  
Named Entity ◽  
To Receive ◽  
Made In

As more and more Arabic textual information becomes available through the Web in homes and businesses, via Internet and Intranet services, there is an urgent need for technologies and tools to process the relevant information. Named Entity Recognition (NER) is an Information Extraction task that has become an integral part of many other Natural Language Processing (NLP) tasks, such as Machine Translation and Information Retrieval. Arabic NER has begun to receive attention in recent years. The characteristics and peculiarities of Arabic, a member of the Semitic languages family, make dealing with NER a challenge. The performance of an Arabic NER component affects the overall performance of the NLP system in a positive manner. This article attempts to describe and detail the recent increase in interest and progress made in Arabic NER research. The importance of the NER task is demonstrated, the main characteristics of the Arabic language are highlighted, and the aspects of standardization in annotating named entities are illustrated. Moreover, the different Arabic linguistic resources are presented and the approaches used in Arabic NER field are explained. The features of common tools used in Arabic NER are described, and standard evaluation metrics are illustrated. In addition, a review of the state of the art of Arabic NER research is discussed. Finally, we present our conclusions. Throughout the presentation, illustrative examples are used for clarification.

scholarly journals NERO: a biomedical named-entity (recognition) ontology with a large, annotated corpus reveals meaningful associations through text embedding

2021 ◽  
Vol 7 (1) ◽  
Author(s):  
Kanix Wang ◽  
Robert Stevens ◽  
Halima Alachram ◽  
Yu Li ◽  
Larisa Soldatova ◽  
...  
Keyword(s):  
Named Entity Recognition ◽  
Entity Recognition ◽  
Analysis Tool ◽  
Automated Extraction ◽  
Named Entities ◽  
Named Entity ◽  
Automated Knowledge ◽  
Biomedical Texts ◽  
Machine Reading ◽  
Biomedical Named Entity Recognition

AbstractMachine reading (MR) is essential for unlocking valuable knowledge contained in millions of existing biomedical documents. Over the last two decades1,2, the most dramatic advances in MR have followed in the wake of critical corpus development3. Large, well-annotated corpora have been associated with punctuated advances in MR methodology and automated knowledge extraction systems in the same way that ImageNet4 was fundamental for developing machine vision techniques. This study contributes six components to an advanced, named entity analysis tool for biomedicine: (a) a new, Named Entity Recognition Ontology (NERO) developed specifically for describing textual entities in biomedical texts, which accounts for diverse levels of ambiguity, bridging the scientific sublanguages of molecular biology, genetics, biochemistry, and medicine; (b) detailed guidelines for human experts annotating hundreds of named entity classes; (c) pictographs for all named entities, to simplify the burden of annotation for curators; (d) an original, annotated corpus comprising 35,865 sentences, which encapsulate 190,679 named entities and 43,438 events connecting two or more entities; (e) validated, off-the-shelf, named entity recognition (NER) automated extraction, and; (f) embedding models that demonstrate the promise of biomedical associations embedded within this corpus.

scholarly journals A Probability based Classification of Named Entities for Malayalam Language combining Word, Part of Speech and Lexicalized features

2019 ◽  
Vol 8 (2) ◽  
pp. 839-842
Keyword(s):  
Named Entity Recognition ◽  
Entity Recognition ◽  
Supervised Machine Learning ◽  
Named Entities ◽  
Named Entity ◽  
Domain Specific ◽  
Part Of Speech ◽  
Classification Probability ◽  
Malayalam Language

Named Entity Recognition is the process wherein named entities which are designators of a sentence are identified. Designators of a sentence are domain specific. The proposed system identifies named entities in Malayalam language belonging to tourism domain which generally includes names of persons, places, organizations, dates etc. The system uses word, part of speech and lexicalized features to find the probability of a word belonging to a named entity category and to do the appropriate classification. Probability is calculated based on supervised machine learning using word and part of speech features present in a tagged training corpus and using certain rules applied based on lexicalized features.

Advances in Computational Linguistics and Text Processing Frameworks

2020 ◽  
pp. 217-244
Author(s):  
Ayush Srivastav ◽  
Hera Khan ◽  
Amit Kumar Mishra
Keyword(s):  
Neural Networks ◽  
Natural Language Processing ◽  
Natural Language ◽  
Computational Linguistics ◽  
Language Processing ◽  
Text Processing ◽  
Named Entity Recognition ◽  
Entity Recognition ◽  
Named Entity ◽  
Part Of Speech

The chapter provides an eloquent account of the major methodologies and advances in the field of Natural Language Processing. The most popular models that have been used over time for the task of Natural Language Processing have been discussed along with their applications in their specific tasks. The chapter begins with the fundamental concepts of regex and tokenization. It provides an insight to text preprocessing and its methodologies such as Stemming and Lemmatization, Stop Word Removal, followed by Part-of-Speech tagging and Named Entity Recognition. Further, this chapter elaborates the concept of Word Embedding, its various types, and some common frameworks such as word2vec, GloVe, and fastText. A brief description of classification algorithms used in Natural Language Processing is provided next, followed by Neural Networks and its advanced forms such as Recursive Neural Networks and Seq2seq models that are used in Computational Linguistics. A brief description of chatbots and Memory Networks concludes the chapter.

scholarly journals An Arabic Dataset for Disease Named Entity Recognition with Multi-Annotation Schemes

Data ◽  
2020 ◽  
Vol 5 (3) ◽  
pp. 60
Author(s):  
Nasser Alshammari ◽  
Saad Alanazi
Keyword(s):  
Language Processing ◽  
Named Entity Recognition ◽  
Entity Recognition ◽  
Definite Article ◽  
Linguistic Features ◽  
Annotation Scheme ◽  
Named Entity ◽  
Part Of Speech ◽  
Annotation Process ◽  
Arabic Natural Language Processing

This article outlines a novel data descriptor that provides the Arabic natural language processing community with a dataset dedicated to named entity recognition tasks for diseases. The dataset comprises more than 60 thousand words, which were annotated manually by two independent annotators using the inside–outside (IO) annotation scheme. To ensure the reliability of the annotation process, the inter-annotator agreements rate was calculated, and it scored 95.14%. Due to the lack of research efforts in the literature dedicated to studying Arabic multi-annotation schemes, a distinguishing and a novel aspect of this dataset is the inclusion of six more annotation schemes that will bridge the gap by allowing researchers to explore and compare the effects of these schemes on the performance of the Arabic named entity recognizers. These annotation schemes are IOE, IOB, BIES, IOBES, IE, and BI. Additionally, five linguistic features, including part-of-speech tags, stopwords, gazetteers, lexical markers, and the presence of the definite article, are provided for each record in the dataset.

scholarly journals CWPC_BiAtt: Character–Word–Position Combined BiLSTM-Attention for Chinese Named Entity Recognition

Information ◽  
2020 ◽  
Vol 11 (1) ◽  
pp. 45 ◽  
Author(s):  
Shardrom Johnson ◽  
Sherlock Shen ◽  
Yuanchen Liu
Keyword(s):  
Language Processing ◽  
Short Term Memory ◽  
Conditional Random Field ◽  
Named Entity Recognition ◽  
Attention Mechanism ◽  
Entity Recognition ◽  
Position Information ◽  
Named Entity ◽  
Pos Tagging ◽  
Word Position

Usually taken as linguistic features by Part-Of-Speech (POS) tagging, Named Entity Recognition (NER) is a major task in Natural Language Processing (NLP). In this paper, we put forward a new comprehensive-embedding, considering three aspects, namely character-embedding, word-embedding, and pos-embedding stitched in the order we give, and thus get their dependencies, based on which we propose a new Character–Word–Position Combined BiLSTM-Attention (CWPC_BiAtt) for the Chinese NER task. Comprehensive-embedding via the Bidirectional Llong Short-Term Memory (BiLSTM) layer can get the connection between the historical and future information, and then employ the attention mechanism to capture the connection between the content of the sentence at the current position and that at any location. Finally, we utilize Conditional Random Field (CRF) to decode the entire tagging sequence. Experiments show that CWPC_BiAtt model we proposed is well qualified for the NER task on Microsoft Research Asia (MSRA) dataset and Weibo NER corpus. A high precision and recall were obtained, which verified the stability of the model. Position-embedding in comprehensive-embedding can compensate for attention-mechanism to provide position information for the disordered sequence, which shows that comprehensive-embedding has completeness. Looking at the entire model, our proposed CWPC_BiAtt has three distinct characteristics: completeness, simplicity, and stability. Our proposed CWPC_BiAtt model achieved the highest F-score, achieving the state-of-the-art performance in the MSRA dataset and Weibo NER corpus.

scholarly journals Evaluating Word Representation Features in Biomedical Named Entity Recognition Tasks

2014 ◽  
Vol 2014 ◽  
pp. 1-6 ◽  
Author(s):  
Buzhou Tang ◽  
Hongxin Cao ◽  
Xiaolong Wang ◽  
Qingcai Chen ◽  
Hua Xu
Keyword(s):  
Machine Learning ◽  
Language Processing ◽  
Named Entity Recognition ◽  
Entity Recognition ◽  
Biomedical Domain ◽  
Crucial Step ◽  
Named Entity ◽  
Different Types ◽  
Word Representation ◽  
Biomedical Named Entity Recognition

Biomedical Named Entity Recognition (BNER), which extracts important entities such as genes and proteins, is a crucial step of natural language processing in the biomedical domain. Various machine learning-based approaches have been applied to BNER tasks and showed good performance. In this paper, we systematically investigated three different types of word representation (WR) features for BNER, including clustering-based representation, distributional representation, and word embeddings. We selected one algorithm from each of the three types of WR features and applied them to the JNLPBA and BioCreAtIvE II BNER tasks. Our results showed that all the three WR algorithms were beneficial to machine learning-based BNER systems. Moreover, combining these different types of WR features further improved BNER performance, indicating that they are complementary to each other. By combining all the three types of WR features, the improvements inF-measure on the BioCreAtIvE II GM and JNLPBA corpora were 3.75% and 1.39%, respectively, when compared with the systems using baseline features. To the best of our knowledge, this is the first study to systematically evaluate the effect of three different types of WR features for BNER tasks.

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