scholarly journals Adsorption and self-assembly of porphyrins on ultrathin CoO films on Ir(100)

2020 ◽  
Vol 11 ◽  
pp. 1516-1524
Author(s):  
Feifei Xiang ◽  
Tobias Schmitt ◽  
Marco Raschmann ◽  
M Alexander Schneider

Porphyrins represent a versatile class of molecules, the adsorption behavior of which on solid surfaces is of fundamental interest due to a variety of potential applications. We investigate here the molecule–molecule and molecule–substrate interaction of Co-5,15-diphenylporphyrin (Co-DPP) and 2H-tetrakis(p-cyanophenyl)porphyrin (2H-TCNP) on one bilayer (1BL) and two bilayer (2BL) thick cobalt oxide films on Ir(100) by scanning tunneling microscopy (STM) and density functional theory (DFT). The two substrates differ greatly with respect to their structural and potential-energy landscape corrugation with immediate consequences for adsorption and self-assembly of the molecules studied. On both films, an effective electronic decoupling from the metal substrate is achieved. However, on the 1BL film, Co-DPP molecules are sufficiently mobile at 300 K and coalesce to self-assembled molecular islands when cooled to 80 K despite their rather weak intermolecular interaction. In contrast, on the 2BL film, due to the rather flat potential landscape, molecular rotation is thermally activated, which effectively prevents self-assembly. The situation is different for 2H-TCNPP, which, due to the additional functional anchoring groups, does not self-assemble on the 1BL film but forms self-assembled compact islands on the 2BL film. The findings demonstrate the guiding effect of the cobalt oxide films of different thickness and the effect of functional surface anchoring.

Crystals ◽  
2020 ◽  
Vol 10 (11) ◽  
pp. 1057
Author(s):  
Yi Wang ◽  
Xinrui Miao ◽  
Wenli Deng

Halogen bonds are currently new noncovalent interactions due to their moderate strength and high directionality, which are widely investigated in crystal engineering. The study about supramolecular two-dimensional architectures on solid surfaces fabricated by halogen bonding has been performed recently. Scanning tunneling microscopy (STM) has the advantages of realizing in situ, real-time, and atomic-level characterization. Our group has carried out molecular self-assembly induced by halogen bonds at the liquid–solid interface for about ten years. In this review, we mainly describe the concept and history of halogen bonding and the progress in the self-assembly of halogen-based organic molecules at the liquid/graphite interface in our laboratory. Our focus is mainly on (1) the effect of position, number, and type of halogen substituent on the formation of nanostructures; (2) the competition and cooperation of the halogen bond and the hydrogen bond; (3) solution concentration and solvent effects on the molecular assembly; and (4) a deep understanding of the self-assembled mechanism by density functional theory (DFT) calculations.


2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Alex Inayeh ◽  
Ryan R. K. Groome ◽  
Ishwar Singh ◽  
Alex J. Veinot ◽  
Felipe Crasto de Lima ◽  
...  

AbstractAlthough the self-assembly of organic ligands on gold has been dominated by sulfur-based ligands for decades, a new ligand class, N-heterocyclic carbenes (NHCs), has appeared as an interesting alternative. However, fundamental questions surrounding self-assembly of this new ligand remain unanswered. Herein, we describe the effect of NHC structure, surface coverage, and substrate temperature on mobility, thermal stability, NHC surface geometry, and self-assembly. Analysis of NHC adsorption and self-assembly by scanning tunneling microscopy and density functional theory have revealed the importance of NHC-surface interactions and attractive NHC-NHC interactions on NHC monolayer structures. A remarkable way these interactions manifest is the need for a threshold NHC surface coverage to produce upright, adatom-mediated adsorption motifs with low surface diffusion. NHC wingtip structure is also critical, with primary substituents leading to the formation of flat-lying NHC2Au complexes, which have high mobility when isolated, but self-assemble into stable ordered lattices at higher surface concentrations. These and other studies of NHC surface chemistry will be crucial for the success of these next-generation monolayers.


2016 ◽  
Vol 18 (39) ◽  
pp. 27390-27395 ◽  
Author(s):  
Oscar Díaz Arado ◽  
Maike Luft ◽  
Harry Mönig ◽  
Philipp Alexander Held ◽  
Armido Studer ◽  
...  

With a combination of scanning tunneling microscopy and density functional theory, effects on molecular self-assembly involving two distinct chemical groups were investigated.


Crystals ◽  
2019 ◽  
Vol 10 (1) ◽  
pp. 13 ◽  
Author(s):  
Zhaofeng Liang ◽  
Qiwei Tian ◽  
Huan Zhang ◽  
Jinping Hu ◽  
Pimo He ◽  
...  

Self-assembled strategy has been proven to be a promising vista in constructing organized low-dimensional nanostructures with molecular precision and versatile functionalities on solid surfaces. Herein, we investigate by a combination of scanning tunneling microscopy (STM) and dispersion-corrected density functional theory (DFT), the adsorption of tetracene molecules on the silver substrate and the mechanism mediating the self-assembly on Ag(110). As expected, ordered domain is formed on Ag(110) after adsorption with adjacent molecules being imaged with alternating bright or dim pattern regularly. While such behavior has been assigned previously to the difference of molecular adsorption height, herein, it is possible to investigate essentially the mechanism leading to the periodic alternation of brightness and dimness for tetracene adsorbed on Ag(110) thanks to the consideration of Van der Waals (vdW) dispersion force. It is demonstrated that the adsorption height in fact is same for both bright and dim molecules, while the adsorption site and the corresponding interfacial charge transfer play an important role in the formation of such pattern. Our report reveals that vdW dispersion interaction is crucial to appropriately describe the adsorption of tetracene on the silver substrate, and the formation of delicate molecular architectures on metal surfaces might also offers a promising approach towards molecular electronics.


RSC Advances ◽  
2016 ◽  
Vol 6 (85) ◽  
pp. 81726-81730
Author(s):  
Xiao-Ping Liu ◽  
Ke Deng ◽  
Qian Wei ◽  
Ming-hui Liang ◽  
Zhan-Jun Zhang ◽  
...  

Scanning tunneling microscopy images of trithia-9-crown-3 and octathia-24-crown-8 self-assembled monolayers (SAMs) reveal completely different SAM structures for the two kinds of thiacrown molecules at liquid n-tetradecane/Au(111) interface.


2006 ◽  
Vol 05 (06) ◽  
pp. 907-911
Author(s):  
NAM-SUK LEE ◽  
HOON-KYU SHIN ◽  
YOUNG-SOO KWON

This study observes the morphology of self-assembled organic thin film that is formed at room temperature using a Scanning Tunneling Microscopy (STM) and examines its electrical properties using a Scanning Tunneling Spectroscopy (STS). The specimen used in this experiment that has a functional group for both sides and will be controlled to make self-assembled onto the Au (111) substrate. After the dilution of the specimen by 1 mM/ml and self-assembled onto the Au (111) substrate. Using a STM, the images of organic thin film can be observed. In addition, the electrical properties of organic thin film can also be examined by the junction structure of STM–organic thin film– Au (111) substrate by using a STM tip. As a result, we measured current–voltage (I–V) curve using STS, I–V curve also clearly shows several current peaks between the negative bias region (-1.42 V) and the positive bias region (1.30 V), respectively.


2016 ◽  
Vol 18 (21) ◽  
pp. 14273-14278 ◽  
Author(s):  
Yuxu Wang ◽  
Kun Zhou ◽  
Ziliang Shi ◽  
Yu-qiang Ma

Structural reconstruction and uniformly sized Fe polynuclears of a self-assembled Fe–porphyrin coordination chain structure are investigated by scanning tunneling microscopy.


2021 ◽  
Vol 9 ◽  
Author(s):  
Shanchao Tan ◽  
Wendi Luo ◽  
Yongjie Zhang ◽  
Xiang-Kui Ren ◽  
Yuhong Liu ◽  
...  

Boron-dipyrromethenes (BODIPY) are promising functional dyes, whose exceptional optical properties are closely related to their supramolecular assembly. Herein, the self-assembly of a BODIPY derivative functionalized with uracil groups is explicitly and thoroughly investigated by using scanning tunneling microscopy (STM). Based on the simulation and calculation by density functional theory (DFT) method, it can be concluded that the construction of ordered self-assembly structure is attributed to the formation of hydrogen bonds between uracil groups. Moreover, the nanotribological property of the self-assembly on HOPG surface is measured by using atomic force microscopy (AFM). The effort on self-assembly of the BODIPY derivative could enhance the understanding of surface assembly mechanism.


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