scholarly journals Priming and substrate quality interactions in soil organic matter models

2013 ◽  
Vol 10 (3) ◽  
pp. 2089-2103 ◽  
Author(s):  
T. Wutzler ◽  
M. Reichstein

Abstract. Interactions between different qualities of soil organic matter (SOM) affecting their turnover are rarely represented in models. In this study, we propose three mathematical strategies at different levels of abstraction to represent those interactions. By implementing these strategies into the Introductory Carbon Balance Model (ICBM) and applying them to several scenarios of litter input, we show that the different levels of abstraction are applicable at different timescales. We present a simple one-parameter equation of substrate limitation that can straightforwardly be implemented into other models of SOM dynamics at decadal timescale. The study demonstrates how substrate quality interactions can explain patterns of priming effects, accelerate turnover in FACE experiments, and the slowdown of decomposition in long-term bare fallow experiments as an effect of energy limitation of microbial biomass. The mechanisms of those interactions need to be further scrutinized empirically for a more complete understanding. Overall, substrate quality interactions contribute to both understanding and quantitatively modelling SOM dynamics.

2012 ◽  
Vol 9 (12) ◽  
pp. 17167-17201 ◽  
Author(s):  
T. Wutzler ◽  
M. Reichstein

Abstract. Interactions between different qualities of soil organic matter (SOM) affecting their turnover are rarely represented in models. In this study we propose three mathematical strategies at different levels of abstraction for representing those interactions. Implementing these strategies into the Introductory Carbon Balance Model (ICBM) and applying them to several scenarios of litter input show that the different levels of abstraction are applicable on different time scales. We present a simple one-parameter equation of substrate limitation applicable at decadal time scale that is straightforward to implement into other models of SOM dynamics. We show how substrate quality interactions can explain priming effects, acceleration of turnover times in FACE experiments, and the slowdown of decomposition in long-term bare fallow experiments as an effect of energy limitation of microbial biomass. The mechanisms of those interactions need to be further scrutinized empirically for a more complete understanding. Overall, substrate quality interactions offer a valuable way of understanding and quantitatively modelling SOM dynamics.


Geoderma ◽  
2017 ◽  
Vol 306 ◽  
pp. 89-98 ◽  
Author(s):  
N. Meyer ◽  
L. Bornemann ◽  
G. Welp ◽  
H. Schiedung ◽  
M. Herbst ◽  
...  

2018 ◽  
Author(s):  
Suzanne Lutfalla ◽  
Pierre Barré ◽  
Sylvain Bernard ◽  
Corentin Le Guillou ◽  
Julien Alléon ◽  
...  

Abstract. The mineral matrix, particularly clay-sized minerals, protects soil organic matter (SOM) from decomposition by microorganisms. Here we report the characterization of SOM and associated minerals over decades of biodegradation, in a French long-term bare fallow (LTBF) experiment started in 1928. The amounts of carbon (C) and nitrogen (N) declined with time for six fractions (sand, coarse silt, fine silt, coarse clays, intermediate clays and fine clays). The C : N ratios of SOM associated to silt fractions remained constant whereas they significantly decreased in clays, reaching very low values in intermediate and fine clays (C : N 


2020 ◽  
Vol 17 (6) ◽  
pp. 1393-1413 ◽  
Author(s):  
Moritz Laub ◽  
Michael Scott Demyan ◽  
Yvonne Funkuin Nkwain ◽  
Sergey Blagodatsky ◽  
Thomas Kätterer ◽  
...  

Abstract. Soil organic matter (SOM) turnover models predict changes in SOM due to management and environmental factors. Their initialization remains challenging as partitioning of SOM into different hypothetical pools is intrinsically linked to model assumptions. Diffuse reflectance mid-infrared Fourier transform spectroscopy (DRIFTS) provides information on SOM quality and could yield a measurable pool-partitioning proxy for SOM. This study tested DRIFTS-derived SOM pool partitioning using the Daisy model. The DRIFTS stability index (DSI) of bulk soil samples was defined as the ratio of the area below the aliphatic absorption band (2930 cm−1) to the area below the aromatic–carboxylate absorption band (1620 cm−1). For pool partitioning, the DSI (2930 cm−1 ∕ 1620 cm−1) was set equal to the ratio of fast-cycling ∕ slow-cycling SOM. Performance was tested by simulating long-term bare fallow plots from the Bad Lauchstädt extreme farmyard manure experiment in Germany (Chernozem, 25 years), the Ultuna continuous soil organic matter field experiment in Sweden (Cambisol, 50 years), and 7 year duration bare fallow plots from the Kraichgau and Swabian Jura regions in southwest Germany (Luvisols). All experiments were at sites that were agricultural fields for centuries before fallow establishment, so classical theory would suggest that a steady state can be assumed for initializing SOM pools. Hence, steady-state and DSI initializations were compared, using two published parameter sets that differed in turnover rates and humification efficiency. Initialization using the DSI significantly reduced Daisy model error for total soil organic carbon and microbial carbon in cases where assuming a steady state had poor model performance. This was irrespective of the parameter set, but faster turnover performed better for all sites except for Bad Lauchstädt. These results suggest that soils, although under long-term agricultural use, were not necessarily at a steady state. In a next step, Bayesian-calibration-inferred best-fitting turnover rates for Daisy using the DSI were evaluated for each individual site or for all sites combined. Two approaches significantly reduced parameter uncertainty and equifinality in Bayesian calibrations: (1) adding physicochemical meaning with the DSI (for humification efficiency and slow SOM turnover) and (2) combining all sites (for all parameters). Individual-site-derived turnover rates were strongly site specific. The Bayesian calibration combining all sites suggested a potential for rapid SOM loss with 95 % credibility intervals for the slow SOM pools' half-life being 278 to 1095 years (highest probability density at 426 years). The credibility intervals of this study were consistent with several recently published Bayesian calibrations of similar two-pool SOM models, i.e., with turnover rates being faster than earlier model calibrations suggested; hence they likely underestimated potential SOM losses.


2019 ◽  
Author(s):  
Moritz Laub ◽  
Michael Scott Demyan ◽  
Yvonne Funkuin Nkwain ◽  
Sergey Blagodatsky ◽  
Thomas Kätterer ◽  
...  

Abstract. The initialization of soil organic matter (SOM) turnover models has been a challenge for decades. Instead of using laborious and error prone size-density fractionation SOM pool partitioning, we propose the inexpensive, rapid, and non destructive Diffuse reflectance mid infrared Fourier transform spectroscopy (DRIFTS) technique on bulk soil samples to gain information on SOM pool partitioning from the spectra. Specifically, the DRIFTS stability index, defined as the ratio of aliphatic C-H (2930 cm−1) to aromatic C=C (1620 cm−1) stretching vibrations, was used to divide SOM into fast and slow cycling pools in the soil organic module of the DAISY model. Long-term bare fallow plots from Bad Lauchstädt (Chernozem, 25 years) and the Ultuna frame trial in Sweden (Cambisol, 50 years) were combined with bare fallow plots of 7 years duration in the Kraichgau and Swabian Jura region in Southwest Germany (Luvisols). All fields had been in agricultural use for centuries before fallow establishment, so classical theory would suggest an initial steady state of SOM, which was hence used to compare the performance of DAISY initializations against the newly established DRIFTS stability index. The test was done using two different published parameter sets (2.7 × 10−6 d−1, 1.4 × 10−4 d−1, 0.1 compared to 4.3 × 10−5 d−1, 1.4 × 10−4 d−1, 0.3 for the turnover rates of slow pool, fast pool and humification efficiency, respectively). The DRIFTS initialization of SOM pools significantly reduced model errors of poor performing model runs assuming steady state, irrespective of the turnover rates used, but the faster turnover parameter set fit better to all sites except Bad Lauchstädt. This suggests that soils under long-term agricultural use were not necessarily at steady state. A Bayesian calibration was applied in a next step to identify the best-fitting turnover rates for the DRIFTS stability index in DAISY, both for each site individually and for a combination of all sites. The two approaches which significantly reduced parameter uncertainty and equifinality were: (1) the addition of the physico-chemically based DRIFTS stability index, and (2) combining several sites into one Bayesian calibration, as derived turnover rates can be strongly site specific. The combination of all four sites showed that SOM is likely lost at relatively fast turnover rates with the 95 % credibility intervals of the slow SOM pools half life ranging from 278 to 1095 years, with 426 years as a value of highest probability density. The credibility intervals of this study were consistent with several recently published Bayesian calibrations of similar SOM models, all turnover rates were considerably faster than earlier models suggested. It is therefore likely that published turnover rates understimate the potential loss of SOM.


2019 ◽  
Vol 135 ◽  
pp. 396-406 ◽  
Author(s):  
Bryony E.A. Dignam ◽  
Maureen O'Callaghan ◽  
Leo M. Condron ◽  
Jos M. Raaijmakers ◽  
George A. Kowalchuk ◽  
...  

Author(s):  
Haiming Tang ◽  
Chao Li ◽  
Lihong Shi ◽  
Li Wen ◽  
Kaikai Cheng ◽  
...  

Abstract Soil organic matter (SOM) and its fractions play an important role in maintaining or improving soil quality and soil fertility. Therefore, the effects of a 34-year long-term fertilizer regime on six functional SOM fractions under a double-cropping rice paddy field of southern China were studied in the current paper. The field experiment included four different fertilizer treatments: chemical fertilizer alone (MF), rice straw residue and chemical fertilizer (RF), 30% organic manure and 70% chemical fertilizer (OM) and without fertilizer input as control (CK). The results showed that coarse unprotected particulate organic matter (cPOM), biochemically, physically–biochemically and chemically protected silt-sized fractions (NH-dSilt, NH-μSilt and H-dSilt) were the main carbon (C) storage fractions under long-term fertilization conditions, accounting for 16.7–26.5, 31.1–35.6, 16.2–17.3 and 7.5–8.2% of the total soil organic carbon (SOC) content in paddy soil, respectively. Compared with control, OM treatment increased the SOC content in the cPOM, fine unprotected POM fraction, pure physically protected fraction and physico-chemically protected fractions by 58.9, 106.7, 117.6 and 28.3%, respectively. The largest proportion of SOC to total SOC in the different fractions was biochemically protected, followed by chemically and unprotected, and physically protected were the smallest. These results suggested that a physical protection mechanism plays an important role in stabilizing C of paddy soil. In summary, the results showed that higher functional SOM fractions and physical protection mechanism play an important role in SOM cycling in terms of C sequestration under the double-cropping rice paddy field.


2001 ◽  
Vol 81 (3) ◽  
pp. 349-355 ◽  
Author(s):  
D. F. E. McArthur ◽  
P M Huang ◽  
L M Kozak

Research has suggested a link between the bioavailability of soil Cd and total soil organic matter. However, some research suggested a negative relationship between total soil organic matter and bioavailable soil Cd while other research suggested a positive relationship. This study investigated the relationship between soil Cd and both the quantity and quality of soil organic matter as influenced by long-term cultivation. Two Orthic Chernozemic surface soil samples, one from a virgin prairie and the other from an adjacent cultivated prairie, were collected from each of 12 different sites throughout southern Saskatchewan, Canada. The samples were analyzed for total organic C, total Cd, Cd availability index (CAI), and pH. The nature of the soil organic matter was investigated with 13C Cross Polarization Magic Angle Spinning Nuclear Magnetic Resonance spectroscopy (13C CPMAS NMR). The total soil Cd, CAI, and total soil organic C of the cultivated soils were significantly lower than those of the virgin soils whereas the opposite trend was observed for the soil pH and the aromaticity of the organic C. The reduced CAI in the cultivated soils was related to the increase in both the soil pH and the aromaticity of the organic C. No relationship was found between the CAI and the soil organic C content, but a significant positive correlation was found between total organic C and total Cd in both the virgin and the cultivated soils. As well, a significant positive correlation was found between the fraction of total Cd removed from the soil after long-term cultivation and the corresponding fraction of organic C removed. Key words: Long-term cultivation, soil organic matter, 13C CPMAS NMR, cadmium


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