A Novel Use of Hyperspectral Images for Human Brain Cancer Detection using in-Vivo Samples

Author(s):  
Himar Fabelo ◽  
Samuel Ortega ◽  
Raùl Guerra ◽  
Gustavo Callicó ◽  
Adam Szolna ◽  
...  
IEEE Access ◽  
2019 ◽  
Vol 7 ◽  
pp. 39098-39116 ◽  
Author(s):  
Himar Fabelo ◽  
Samuel Ortega ◽  
Adam Szolna ◽  
Diederik Bulters ◽  
Juan F. Pineiro ◽  
...  

PLoS ONE ◽  
2018 ◽  
Vol 13 (3) ◽  
pp. e0193721 ◽  
Author(s):  
Himar Fabelo ◽  
Samuel Ortega ◽  
Daniele Ravi ◽  
B. Ravi Kiran ◽  
Coralia Sosa ◽  
...  

2015 ◽  
Vol 7 (292) ◽  
pp. 292ra100-292ra100 ◽  
Author(s):  
Carmen Kut ◽  
Kaisorn L. Chaichana ◽  
Jiefeng Xi ◽  
Shaan M. Raza ◽  
Xiaobu Ye ◽  
...  

Sensors ◽  
2019 ◽  
Vol 19 (4) ◽  
pp. 920 ◽  
Author(s):  
Himar Fabelo ◽  
Martin Halicek ◽  
Samuel Ortega ◽  
Maysam Shahedi ◽  
Adam Szolna ◽  
...  

The main goal of brain cancer surgery is to perform an accurate resection of the tumor, preserving as much normal brain tissue as possible for the patient. The development of a non-contact and label-free method to provide reliable support for tumor resection in real-time during neurosurgical procedures is a current clinical need. Hyperspectral imaging is a non-contact, non-ionizing, and label-free imaging modality that can assist surgeons during this challenging task without using any contrast agent. In this work, we present a deep learning-based framework for processing hyperspectral images of in vivo human brain tissue. The proposed framework was evaluated by our human image database, which includes 26 in vivo hyperspectral cubes from 16 different patients, among which 258,810 pixels were labeled. The proposed framework is able to generate a thematic map where the parenchymal area of the brain is delineated and the location of the tumor is identified, providing guidance to the operating surgeon for a successful and precise tumor resection. The deep learning pipeline achieves an overall accuracy of 80% for multiclass classification, improving the results obtained with traditional support vector machine (SVM)-based approaches. In addition, an aid visualization system is presented, where the final thematic map can be adjusted by the operating surgeon to find the optimal classification threshold for the current situation during the surgical procedure.


Electronics ◽  
2018 ◽  
Vol 7 (11) ◽  
pp. 283 ◽  
Author(s):  
Emanuele Torti ◽  
Giordana Florimbi ◽  
Francesca Castelli ◽  
Samuel Ortega ◽  
Himar Fabelo ◽  
...  

The precise delineation of brain cancer is a crucial task during surgery. There are several techniques employed during surgical procedures to guide neurosurgeons in the tumor resection. However, hyperspectral imaging (HSI) is a promising non-invasive and non-ionizing imaging technique that could improve and complement the currently used methods. The HypErspectraL Imaging Cancer Detection (HELICoiD) European project has addressed the development of a methodology for tumor tissue detection and delineation exploiting HSI techniques. In this approach, the K-means algorithm emerged in the delimitation of tumor borders, which is of crucial importance. The main drawback is the computational complexity of this algorithm. This paper describes the development of the K-means clustering algorithm on different parallel architectures, in order to provide real-time processing during surgical procedures. This algorithm will generate an unsupervised segmentation map that, combined with a supervised classification map, will offer guidance to the neurosurgeon during the tumor resection task. We present parallel K-means clustering based on OpenMP, CUDA and OpenCL paradigms. These algorithms have been validated through an in-vivo hyperspectral human brain image database. Experimental results show that the CUDA version can achieve a speed-up of ~ 150 × with respect to a sequential processing. The remarkable result obtained in this paper makes possible the development of a real-time classification system.


2017 ◽  
Vol 19 (suppl_3) ◽  
pp. iii37-iii37 ◽  
Author(s):  
S. Ortega ◽  
H. Fabelo ◽  
R. Camacho ◽  
M. L. Plaza ◽  
G. M. Callico ◽  
...  

Electronics ◽  
2020 ◽  
Vol 9 (9) ◽  
pp. 1503 ◽  
Author(s):  
Emanuele Torti ◽  
Raquel Leon ◽  
Marco La Salvia ◽  
Giordana Florimbi ◽  
Beatriz Martinez-Vega ◽  
...  

The early detection of skin cancer is of crucial importance to plan an effective therapy to treat the lesion. In routine medical practice, the diagnosis is based on the visual inspection of the lesion and it relies on the dermatologists’ expertise. After a first examination, the dermatologist may require a biopsy to confirm if the lesion is malignant or not. This methodology suffers from false positives and negatives issues, leading to unnecessary surgical procedures. Hyperspectral imaging is gaining relevance in this medical field since it is a non-invasive and non-ionizing technique, capable of providing higher accuracy than traditional imaging methods. Therefore, the development of an automatic classification system based on hyperspectral images could improve the medical practice to distinguish pigmented skin lesions from malignant, benign, and atypical lesions. Additionally, the system can assist general practitioners in first aid care to prevent noncritical lesions from reaching dermatologists, thereby alleviating the workload of medical specialists. In this paper is presented a parallel pipeline for skin cancer detection that exploits hyperspectral imaging. The computational times of the serial processing have been reduced by adopting multicore and many-core technologies, such as OpenMP and CUDA paradigms. Different parallel approaches have been combined, leading to the development of fifteen classification pipeline versions. Experimental results using in-vivo hyperspectral images show that a hybrid parallel approach is capable of classifying an image of 50 × 50 pixels with 125 bands in less than 1 s.


1994 ◽  
Vol 31 (2) ◽  
pp. 185
Author(s):  
Yong Whee Bahk ◽  
Kyung Sub Shinn ◽  
Tae Suk Suh ◽  
Bo Young Choe ◽  
Kyo Ho Choi

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