scholarly journals A DNA barcode-based survey of terrestrial arthropods in the Society Islands of French Polynesia: host diversity within the SymbioCode Project

2017 ◽  
Author(s):  
Thibault Ramage ◽  
Patricia Martins-Simoes ◽  
Gladys Mialdea ◽  
Roland Allemand ◽  
Anne Duplouy ◽  
...  
Keyword(s):  
Molecular Diversity ◽  
Genetic Material ◽  
Dna Barcode ◽  
French Polynesia ◽  
Molecular Data ◽  
Species Boundaries ◽  
Bacterial Symbionts ◽  
Society Islands ◽  
Terrestrial Arthropods ◽  
Natural Laboratory

We report here on the taxonomic and molecular diversity of 10 929 terrestrial arthropod specimens, collected on four islands of the Society Archipelago, French Polynesia. The survey was part of the ‘SymbioCode Project’ that aims to establish the Society Islands as a natural laboratory in which to investigate the flux of bacterial symbionts (e.g., Wolbachia) and other genetic material among branches of the arthropod tree. The sample includes an estimated 1127 species, of which 1098 included at least one DNA-barcoded specimen and 29 were identified to species level using morphological traits only. Species counts based on molecular data emphasize that some groups have been understudied in this region and deserve more focused taxonomic effort, notably Diptera, Lepidoptera and Hymenoptera. Some taxa that were also subjected to morphological scrutiny reveal a consistent match between DNA and morphology-based species boundaries in 90% of the cases, with a larger than expected genetic diversity in the remaining 10%. Many species from this sample are new to this region or are undescribed. Some are under description, but many await inspection by motivated experts, who can use the online images or request access to ethanol-stored specimens.

scholarly journals A DNA barcode reference library of the French Polynesian shore fishes

2019 ◽  
Author(s):  
Erwan Delrieu-Trottin ◽  
Jeffrey T. Williams ◽  
Diane Pitassy ◽  
Amy Driskell ◽  
Nicolas Hubert ◽  
...  
Keyword(s):  
Dna Barcoding ◽  
Biological Diversity ◽  
Dna Barcode ◽  
Reef Fishes ◽  
French Polynesia ◽  
Morphological Characters ◽  
Reference Library ◽  
Society Islands ◽  
Extensive Collection ◽  
I Gene

AbstractThe emergence of DNA barcoding and metabarcoding opened new ways to study biological diversity, however, the completion of DNA barcode libraries is fundamental for such approaches to succeed. This dataset is a DNA barcode reference library (fragment of Cytochrome Oxydase I gene) for 2,190 specimens representing at least 540 species of shore fishes collected over 10 years at 154 sites across the four volcanic archipelagos of French Polynesia; the Austral, Gambier, Marquesas and Society Islands, a 5,000,000 km2area. At present, 65% of the known shore fish species of these archipelagoes possess a DNA barcode associated with preserved, photographed, tissue sampled and cataloged specimens, and extensive collection locality data. This dataset represents one of the most comprehensive DNA barcoding efforts for a vertebrate fauna to date. Considering the challenges associated with the conservation of coral reef fishes and the difficulties of accurately identifying species using morphological characters, this publicly available library is expected to be helpful for both authorities and academics in various fields.

First record of the superfamily Proctotrupoidea from French Polynesia (Hymenoptera)

2020 ◽  
Vol 125 (4) ◽  
pp. 404-406
Author(s):  
Thibault Ramage
Keyword(s):  
First Record ◽  
French Polynesia ◽  
Society Islands ◽  
First Time

A Helorid wasp, Helorus ruficornis Förster, 1856, is reported for the first time on Tahiti (Society Islands), which is also the first record of both Proctotrupoidea and family Heloridae in French Polynesia. The potential hosts of Helorus ruficornis in French Polynesia are discussed.

scholarly journals Nature, Incidence, and Symptomatology of Viruses Infecting Vanilla tahitensis in French Polynesia

Plant Disease ◽  
2004 ◽  
Vol 88 (2) ◽  
pp. 119-124 ◽  
Author(s):  
M. Grisoni ◽  
F. Davidson ◽  
C. Hyrondelle ◽  
K. Farreyrol ◽  
M. L. Caruana ◽  
...  
Keyword(s):  
Mosaic Virus ◽  
Significant Proportion ◽  
French Polynesia ◽  
Bean Common Mosaic Virus ◽  
Enzyme Linked Immunosorbent Assay ◽  
Watermelon Mosaic Virus ◽  
Cymbidium Mosaic Virus ◽  
Virus Identification ◽  
Society Islands ◽  
Leeward Islands

A survey was carried out to identify the viruses infecting vanilla in French Polynesia and to assess their incidence. Virus identification was based on enzyme-linked immunosorbent assay (ELISA) and, for potyviruses, on the sequence of part of the coat protein and inoculation assays. Between 1998 and 1999, 3,610 vanilla plants from 49 plots in the Society Islands were indexed. Cymbidium mosaic virus (CymMV) was detected in 500 vines from 10 plots in the Leeward Islands. The data suggest that this virus has spread widely since its first detection in French Polynesia in 1986, most likely through the dissemination of symptomless infected cuttings. Viruses belonging to the Potyvirus genus were found in 674 plants from 27 plots in the four islands surveyed. Three distinct potyviruses have been identified: (i) Vanilla mosaic virus, (ii) Watermelon mosaic virus, and (iii) and a virus related to Bean common mosaic virus. The symptoms induced on Vanilla tahitensis by the three potyviruses can be differentiated from each other and from those due to CymMV. A significant proportion of the plants surveyed (97/476) were symptomatic but tested negative by ELISA for CymMV and the Potyvirus group. Odontoglossum ringspot virus was not detected in any sample tested.

Comparison of odontocete populations of the Marquesas and Society Islands (French Polynesia)

2008 ◽  
Vol 89 (5) ◽  
pp. 931-941 ◽  
Author(s):  
Alexandre Gannier
Keyword(s):  
Relative Abundance ◽  
Bottlenose Dolphin ◽  
Bottlenose Dolphins ◽  
Sperm Whale ◽  
French Polynesia ◽  
Society Islands ◽  
Spotted Dolphin ◽  
Abundance Indices ◽  
Beaked Whales ◽  
Using Data

Small boat surveys were organized to study cetaceans of the Marquesas (9°S and 140°W) and the Society Islands (17°S and 150°W) in French Polynesia. Prospecting took place from 12–15 m sailboats, between 1996 and 2001 with systematic visual searching. Boats moved according to sea conditions, at a mean speed of 10 km/h. Effective effort of 4856 km in the Marquesas and 10,127 km in the Societies were logged. Relative abundance indices were processed for odontocetes using data obtained with Beaufort 4 or less. In the Marquesas, 153 on-effort sightings were obtained on 10 delphinids species including the spotted dolphin, spinner dolphin, bottlenose dolphin, melon-headed whale and rough-toothed dolphin. In the Societies, 153 sightings of 12 odontocetes included delphinids (spinner, rough-toothed and bottlenose dolphins, short-finned pilot and melon-headed whales, Fraser's dolphin, Risso's dolphin and pygmy killer whale) and two species of beaked whales, the sperm whale and dwarf sperm whale. Relative abundance indices were higher in the Marquesas than in the Societies both inshore (0.93 ind/km2 against 0.36 ind/km2) and offshore (0.28 ind/km2 against 0.14 ind/km2). Differences in remote-sensed primary production were equally important, the Marquesas waters featuring an annual average of 409 mgC.m−2 · day−1 and the Societies of only 171 mgC · m−2 · day−1. The presence of a narrow shelf around the Marquesas also accounted for differences in odontocete populations, in particular the delphinids.

scholarly journals Bombus (Pyrobombus) johanseni Sladen, 1919, a valid North American bumble bee species, with a new synonymy and comparisons to other “red-banded” bumble bee species in North America (Hymenoptera, Apidae, Bombini)

ZooKeys ◽  
2020 ◽  
Vol 984 ◽  
pp. 59-81
Author(s):  
Cory S. Sheffield ◽  
Ryan Oram ◽  
Jennifer M. Heron
Keyword(s):  
North America ◽  
North American ◽  
Dna Barcode ◽  
Molecular Data ◽  
The Arctic ◽  
Valid Species ◽  
Bumble Bee ◽  
Widespread Species ◽  
Old World ◽  
Northern Canada

The bumble bee (Hymenoptera, Apidae, Bombini, Bombus Latreille) fauna of the Nearctic and Palearctic regions are considered well known, with a few species occurring in both regions (i.e., with a Holarctic distribution), but much of the Arctic, especially in North America, remains undersampled or unsurveyed. Several bumble bee taxa have been described from northern North America, these considered either valid species or placed into synonymy with other taxa. However, some of these synonymies were made under the assumption of variable hair colour only, without detailed examination of other morphological characters (e.g., male genitalia, hidden sterna), and without the aid of molecular data. Recently, Bombus interacti Martinet, Brasero & Rasmont, 2019 was described from Alaska where it is considered endemic; based on both morphological and molecular data, it was considered a taxon distinct from B. lapponicus (Fabricius, 1793). Bombus interacti was also considered distinct from B. gelidus Cresson, 1878, a taxon from Alaska surmised to be a melanistic form of B. lapponicus sylvicola Kirby, 1837, the North American subspecies (Martinet et al. 2019). Unfortunately, Martinet et al. (2019) did not have DNA barcode sequences (COI) for females of B. interacti, but molecular data for a melanistic female specimen matching the DNA barcode sequence of the holotype of B. interacti have been available in the Barcodes of Life Data System (BOLD) since 2011. Since then, additional specimens have been obtained from across northern North America. Also unfortunate was that B. sylvicola var. johanseni Sladen, 1919, another melanistic taxon described from far northern Canada, was not considered. Bombus johanseni is here recognized as a distinct taxon from B. lapponicus sylvicola Kirby, 1837 (sensuMartinet et al. 2019) in the Nearctic region, showing the closest affinity to B. glacialis Friese, 1902 of the Old World. As the holotype male of B. interacti is genetically identical to material identified here as B. johanseni, it is placed into synonymy. Thus, we consider B. johanseni a widespread species occurring across arctic and subarctic North America in which most females are dark, with rarer pale forms (i.e., “interacti”) occurring in and seemingly restricted to Alaska. In addition to B. johanseni showing molecular affinities to B. glacialis of the Old World, both taxa also inhabit similar habitats in the arctic areas of both Nearctic and Palearctic, respectively. It is also likely that many of the specimens identified as B. lapponicus sylvicola from far northern Canada and Alaska might actually be B. johanseni, so that should be considered for future studies of taxonomy, distribution, and conservation assessment of North American bumble bees.

scholarly journals Patterns of morphological diversification in giant Berberomeloe blister beetles (Coleoptera: Meloidae) reveal an unexpected taxonomic diversity concordant with mtDNA phylogenetic structure

2020 ◽  
Vol 189 (4) ◽  
pp. 1249-1312 ◽  
Author(s):  
Alberto Sánchez-Vialas ◽  
Mario García-París ◽  
José L Ruiz ◽  
Ernesto Recuero
Keyword(s):  
New Species ◽  
Genetic Variability ◽  
Phenotypic Variability ◽  
Morphological Diversity ◽  
Taxonomic Diversity ◽  
Molecular Data ◽  
Species Boundaries ◽  
Congeneric Species ◽  
Phylogenetic Structure ◽  
Morphological Diversification

Abstract Delimiting species boundaries is a complex challenge usually hindered by overlooked morphological diversification or misinterpretation of geographically structured phenotypic variability. Independent molecular data are extremely useful to characterize and understand such morphological diversity. Morphological and molecular variability of the non-phoretic and apterous, widely distributed, giant blister beetles of the genus Berberomeloe, were investigated within and between lineages across most of the distributional range of the genus. We used two mtDNA gene fragments to characterize genetic variability and to produce a time-calibrated phylogeny of the genus. Our results reveal several mitochondrial lineages, allopatrically, parapatrically and sympatrically distributed. Most clades are not distinguishable between each other based on morphometrics. However, no morphometric overlap is observed between two closely related clades, one of them occurring in sympatry with a distantly congeneric species (B. insignis), suggesting that sympatry could trigger morphological diversification. Although most species share a morphometric space, they can be morphologically identified by a combination of easily observed characteristic qualitative features. Based on the concordance between mtDNA clades and morphological units, we describe six new species of Berberomeloe (B. castuo sp. nov., B. comunero sp. nov., B. indalo sp. nov, B. yebli sp. nov., B. payoyo sp. nov. and B. tenebrosus sp. nov.), revalidate two taxa (B. maculifrons comb. nov. and B. laevigatus comb. nov.) and redefine B. majalis.

Spirocamallanus species of French Polynesian coral reef fishes

1997 ◽  
Vol 75 (8) ◽  
pp. 1270-1279 ◽  
Author(s):  
Mark C. Rigby ◽  
Martin L. Adamson
Keyword(s):  
Coral Reef ◽  
Ecological Factors ◽  
Buccal Capsule ◽  
Reef Fishes ◽  
French Polynesia ◽  
New Host ◽  
Society Islands ◽  
Single Clade ◽  
Taxonomic Importance ◽  
New Host Records

Spirocamallanus monotaxis is redescribed from Monotaxis grandoculis (Lethrinidae) and reported from 10 other species of coral reef associated fishes from both the Society Islands and the Tuamotu Islands. This represents a new locality for S. monotaxis and 10 new host records. Spirocamallanus colei n.sp. is described from Acanthurus achilles (Acanthuridae) and from Acanthurus guttatus, Acanthurus lineatus, Acanthurus triostegus, and Zebrasoma scopas from both the Society Islands and the Tuamotu Islands. Spirocamallanus chaimha n.sp. is described from Ctenochaetus striatus and Acanthurus olivaceous (Acanthuridae) from Moorea in the Society Islands. The number of buccal capsule ridges in Spirocamallanus varies and minor differences have no taxonomic importance. Marine Spirocamallanus species appear to belong to a single clade characterized by 3 preanal papillae and 5 postanal papillae. This clade may be subdivided on the basis of the shape of the female tail. In French Polynesia, ecological factors as opposed to phylogenetic factors appear to determine host specificity for Spirocamallanus. A new system of reporting the positions of the caudal papillae, based on the position of the papillae relative to the length of the alae, is used.

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