Speciation in the deep: genomics and morphology reveal a new species of beaked whale Mesoplodon eueu

The deep sea has been described as the last major ecological frontier, as much of its biodiversity is yet to be discovered and described. Beaked whales (ziphiids) are among the most visible inhabitants of the deep sea, due to their large size and worldwide distribution, and their taxonomic diversity and much about their natural history remain poorly understood. We combine genomic and morphometric analyses to reveal a new Southern Hemisphere ziphiid species, Ramari's beaked whale, Mesoplodon eueu , whose name is linked to the Indigenous peoples of the lands from which the species holotype and paratypes were recovered. Mitogenome and ddRAD-derived phylogenies demonstrate reciprocally monophyletic divergence between M. eueu and True's beaked whale ( M. mirus ) from the North Atlantic, with which it was previously subsumed. Morphometric analyses of skulls also distinguish the two species. A time-calibrated mitogenome phylogeny and analysis of two nuclear genomes indicate divergence began circa 2 million years ago (Ma), with geneflow ceasing 0.35–0.55 Ma. This is an example of how deep sea biodiversity can be unravelled through increasing international collaboration and genome sequencing of archival specimens. Our consultation and involvement with Indigenous peoples offers a model for broadening the cultural scope of the scientific naming process.

Longman’s Beaked Whale Indopacetus pacificus and Mesoplodon spp. Entanglements Off Pakistan: Are Pelagic Gillnet Fisheries a Potential Threat?

Beaked whales (Ziphiidae) are rarely reported in the Arabian Sea. Four new cases (five individuals) were documented in deep waters offshore Pakistan through a pilot programme in 2015-2018 where trained fishers video-recorded net entanglements in the pelagic tuna drift gillnet fishery. Videos were analysed frame-by-frame. The large body size (est. 5-6m) of one specimen, its moderately bulbous melon, long tubular rostrum and a large falcate dolphin-like dorsal fin, indicated Longman’s beaked whale Indopacetus pacificus. It represents the first record for Pakistan (EEZ), and with a stranding at Gujarat, India, a second for the northern Arabian Sea. The other 4 ziphiids were significantly smaller (est. 3– 4.5m), with a decidedly non-bulbous melon, variable short to moderately short rostra, falcate to subtriangular dorsal fin and a nondescript greyish colouration, identified as Mesoplodon spp. Video quality was poor but none of the specimens showed tusks, arched mandible lines or noticeable linear tooth rakes, practically excluding adult males. The successful release of all net-entangled beaked whales is unprecedented. The simultaneous bycatch of two mesoplodonts in the same net set is equally exceptional. This citizen science strategy adds to our understanding of the distribution of I. pacificus and mesoplodonts, which may be more common in the Arabian Sea than the scarce literature suggests. If significant bycatch of beaked whales is confirmed, the massive tuna gillnet fishing effort in the Arabian Sea could have negative implications for their conservation status.

Oceanographic Drivers of Cuvier’s (Ziphius cavirostris) and Sowerby’s (Mesoplodon bidens) Beaked Whales Acoustic Occurrence along the Irish Shelf Edge

Cuvier’s and Sowerby’s beaked whales occur year-round in western Irish waters, yet remain some of the most poorly understood cetaceans in the area. Considering the importance of the area for anthropogenic activities and the sensitivity of beaked whales to noise, understanding their ecology is essential to minimise potential overlaps. To this end, fixed bottom-mounted autonomous acoustic recorders were deployed at 10 stations over four recording periods spanning from May 2015 to November 2016. Acoustic data were collected over 1934 cumulative days, for a total of 7942 h of recordings. To model the probability of presence of Cuvier’s and Sowerby’s beaked whales in the area as a function of oceanographic predictors, we used Generalised Additive Models, fitted with Generalised Estimating Equations to deal with temporal autocorrelation. To reflect prey availability, oceanographic variables acting as proxies of primary productivity and prey aggregation processes such as upwelling events and thermal fronts were selected. Our results demonstrated that oceanographic variables significantly contributed to the occurrence of Cuvier’s and Sowerby’s beaked whales (p-values between <0.001 and <0.05). The species showed similar preferences, with the exception of sdSST. The inclusion of a parameter accounting for the recorders location confirmed the existence of a latitudinal partitioning for those species in the area. This study provides a point of comparison for future research and represents an important step towards a better understanding of those elusive species.

Spatial Analysis of Beaked Whale Foraging During Two 12 kHz Multibeam Echosounder Surveys

To add to the growing information about the effect of multibeam echosounder (MBES) operation on marine mammals, a study was conducted to assess the spatial foraging effort of Cuvier’s beaked whales during two MBES surveys conducted in January of 2017 and 2019 off of San Clemente Island, California. The MBES surveys took place on the Southern California Antisubmarine Warfare Range (SOAR), which contains an array of 89 hydrophones covering an area of approximately 1800 km2 over which foraging beaked whales were detected. A spatial autocorrelation analysis of foraging effort was conducted using the Moran’s I (global) and the Getis-Ord Gi∗ (local) statistics, to understand the animals’ spatial use of the entire SOAR, as well as smaller areas, respectively, within the SOAR Before, During, and After the two MBES surveys. In both years, the global Moran’s I statistic suggested significant spatial clustering of foraging events on the SOAR during all analysis periods (Before, During, and After). In addition, a Kruskal-Wallis (comparison) test of both years revealed that the number of foraging events across analysis periods were similar within a given year. In 2017, the local Getis-Ord Gi∗ analysis identified hot spots of foraging activity in the same general area of the SOAR during all analysis periods. This local result, in combination with the global and comparison results of 2017, suggest there was no obvious period-related change detected in foraging effort associated with the 2017 MBES survey at the resolution measurable with the hydrophone array. In 2019, the foraging hot spot area shifted from the southernmost corner of the SOAR Before, to the center During, and was split between the two locations After the MBES survey. Due to the pattern of period-related spatial change identified in 2019, and the lack of change detected in 2017, it was unclear whether the change detected in 2019 was a result of MBES activity or some other environmental factor. Nonetheless, the results strongly suggest that the level of detected foraging during either MBES survey did not change, and most of the foraging effort remained in the historically well-utilized foraging locations of Cuvier’s beaked whales on the SOAR.

Towards a better characterisation of deep-diving whales’ distributions by using prey distribution model outputs?

In habitat modelling, environmental variables are assumed to be proxies of lower trophic levels distribution and by extension, of marine top predator distributions. More proximal variables, such as potential prey fields, could refine relationships between top predator distributions and their environment. In situ data on prey distributions are not available over large spatial scales but, a numerical model, the Spatial Ecosystem And POpulation DYnamics Model (SEAPODYM), provides simulations of the biomass and production of zooplankton and six functional groups of micronekton at the global scale. Here, we explored whether generalised additive models fitted to simulated prey distribution data better predicted deep-diver densities (here beaked whales Ziphiidae and sperm whales Physeter macrocephalus) than models fitted to environmental variables. We assessed whether the combination of environmental and prey distribution data would further improve model fit by comparing their explanatory power. For both taxa, results were suggestive of a preference for habitats associated with topographic features and thermal fronts but also for habitats with an extended euphotic zone and with large prey of the lower mesopelagic layer. For beaked whales, no SEAPODYM variable was selected in the best model that combined the two types of variables, possibly because SEAPODYM does not accurately simulate the organisms on which beaked whales feed on. For sperm whales, the increase model performance was only marginal. SEAPODYM outputs were at best weakly correlated with sightings of deep-diving cetaceans, suggesting SEAPODYM may not accurately predict the prey fields of these taxa. This study was a first investigation and mostly highlighted the importance of the physiographic variables to understand mechanisms that influence the distribution of deep-diving cetaceans. A more systematic use of SEAPODYM could allow to better define the limits of its use and a development of the model that would simulate larger prey beyond 1,000 m would probably better characterise the prey of deep-diving cetaceans.

Cetaceans Sightings During Research Cruises in Three Remote Atlantic British Overseas Territories

Marine mammal sightings were recorded during research cruises to three remote, mid-ocean British Overseas Territories in the South Atlantic and Southern Ocean. In March to April 2018 and 2019, the Exclusive Economic Zones (EEZs) of tropical St Helena and temperate Tristan da Cunha were surveyed. The sub-polar waters of South Georgia and the South Sandwich Islands (SGSSI) were surveyed in February to March 2019. At St Helena in 2018, five species were recorded during 11 sightings, and in 2019, four species, with one additional unidentified species, during seven sightings. Most of these sightings were of dolphin species, which are known to be resident around the Island and seamounts. In Tristan da Cunha in 2018, a total of five identified and one unidentified species were recorded during six sightings, half of which were associated with the Islands or seamounts. In 2019, due to rough weather, no sightings were recorded in the Tristan da Cunha waters. Around SGSSI, 162 sightings of 236 cetaceans were made in 2019, mostly of baleen whales, with seven species identified with certainty. Sightings around the southern South Sandwich Islands included beaked whales and large dolphins, whereas baleen whales dominated in the northern South Sandwich Islands. These results provide new data for rarely surveyed regions, helping to build a spatial picture of important areas for marine mammals, which will help inform marine spatial protection strategies.