Approximate string searching with fast fourier transforms and simplexes
Keyword(s):
Sigma 1
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Previous algorithms for solving the approximate string matching with Hamming distance problem with wildcard ("don't care") characters have been shown to take \(O(|\Sigma| N \log M)\) time, where \(N\) is the length of the text, \(M\) is the length of the pattern, and \(|\Sigma|\) is the size of the alphabet. They make use of the Fast Fourier Transform for efficiently calculating convolutions. We describe a novel approach of the problem, which makes use of special encoding schemes that depend on \((|\Sigma| - 1)\)-simplexes in \((|\Sigma| - 1)\)-dimensional space.
1994 ◽
Vol 04
(04)
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pp. 477-488
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1980 ◽
Vol 17
(3)
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pp. 284-284
2020 ◽
Vol 9
(6)
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pp. 1116-1122
2015 ◽
Vol 3
(11)
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pp. 153-163
1998 ◽
Vol 15
(8)
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pp. 2111
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2021 ◽
Vol 10
(3)
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pp. 2256-2259