scholarly journals A mechanistic overview of ruminal fibre digestion.

Author(s):  
Adrian E Naas ◽  
Phillip B Pope

Ruminants have co-evolved with symbiotic rumen microbiota, which readily convert ingested plant fibres into the nutrients they need to sustain their growth and maintenance. Fibre degradation within the rumen microbiome has been attributed to a limited number of cultivable representatives, which has restricted our ability to understand the different enzymatic machineries that exist. However, via a combination of culturing, meta-omics, bioinformatics, biochemistry and enzymology, we are beginning to expand our insight into the different fibre-digesting strategies that rumen microbiota employ. We discuss findings from studies on well-known Ruminococcus, Fibrobacter and Prevotella isolates, as well as those from poorly understood and as-yet uncultured Bacteroidetes lineages. Collectively, these approaches have revealed new mechanistic information related to the hydrolytic capacity of cellulosomes, free enzymes, outer membrane vesicles, polysaccharide utilization loci and large multi-modular enzymes, which are generating deeper insights into the intricate microbial networks that engage in ruminal fibre digestion.

2019 ◽  
Author(s):  
Adrian E Naas ◽  
Phillip B Pope

Ruminants have co-evolved with symbiotic rumen microbiota, which readily convert ingested plant fibres into the nutrients they need to sustain their growth and maintenance. Fibre degradation within the rumen microbiome has been attributed to a limited number of cultivable representatives, which has restricted our ability to understand the different enzymatic machineries that exist. However, via a combination of culturing, meta-omics, bioinformatics, biochemistry and enzymology, we are beginning to expand our insight into the different fibre-digesting strategies that rumen microbiota employ. We discuss findings from studies on well-known Ruminococcus, Fibrobacter and Prevotella isolates, as well as those from poorly understood and as-yet uncultured Bacteroidetes lineages. Collectively, these approaches have revealed new mechanistic information related to the hydrolytic capacity of cellulosomes, free enzymes, outer membrane vesicles, polysaccharide utilization loci and large multi-modular enzymes, which are generating deeper insights into the intricate microbial networks that engage in ruminal fibre digestion.


2015 ◽  
Vol 2 (5) ◽  
pp. 93-96 ◽  
Author(s):  
A Fateh ◽  
F Vaziri ◽  
F Rahimi Janani ◽  
S Ahmadi Badi ◽  
M Ghazanfari ◽  
...  

PLoS ONE ◽  
2014 ◽  
Vol 9 (11) ◽  
pp. e112802 ◽  
Author(s):  
Joseph A. Rosenthal ◽  
Chung-Jr. Huang ◽  
Anne M. Doody ◽  
Tiffany Leung ◽  
Kaho Mineta ◽  
...  

2019 ◽  
Author(s):  
Jiajun Wang ◽  
Rémi Terrasse ◽  
Jayesh Arun Bafna ◽  
Lorraine Benier ◽  
Mathias Winterhalter

Multi-drug resistance in Gram-negative bacteria is often associated with low permeability of the outer membrane. To investigate the role of membrane channels in the uptake of antibiotics, we extract, purify and reconstitute them into artificial planar membranes. To avoid this time-consuming procedure, here we show a robust approach using fusion of native outer membrane vesicles (OMV) into planar lipid bilayer which moreover allows also to some extend the characterization of membrane protein channels in their native environment. Two major membrane channels from <i>Escherichia coli</i>, OmpF and OmpC, were overexpressed from the host and the corresponding OMVs were collected. Each OMV fusion revealed surprisingly single or only few channel activities. The asymmetry of the OMV´s translates after fusion into the lipid membrane with the LPS dominantly present at the side of OMV addition. Compared to conventional reconstitution methods, the channels fused from OMVs containing LPS have similar conductance but a much broader distribution. The addition of Enrofloxacin on the LPS side yields somewhat higher association (<i>k<sub>on</sub></i>) and lower dissociation (<i>k<sub>off</sub></i>) rates compared to LPS-free reconstitution. We conclude that using outer membrane vesicles is a fast and easy approach for functional and structural studies of membrane channels in the native membrane.


2018 ◽  
Author(s):  
Sophie Brameyer ◽  
Laure Plener ◽  
Axel MMller ◽  
Andreas Klingl ◽  
Gerhard Wanner ◽  
...  

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