Diet of the southern ravine salamander Plethodon richmondi

The diets of many small North American Plethodon species are poorly studied despite their important roles in forest ecosystems. Using a non lethal gastric lavage method, we examined the spring-season diet of 31 southern ravine salamanders (Plethodon richmondi) from a second-growth forest in south-eastern Kentucky (USA). We recovered and identified a total of 452 prey items from 14 different prey groups. The three most important prey groups were Formicidae (ants), Acari (mites and ticks), and Collembola (springtails). Together, these groups accounted for more than 80 % of all prey items. Examining the diets of terrestrial salamanders may help us better understand their roles in the regulation of invertebrate communities and the transfer of accessible nutrients back to the soil.

Checklist of free-living microturbellarian flatworms (Turbellaria, Platyhelminthes) in the Suquía River Basin, Córdoba, Argentina

Free-living microturbellarians are a part of lentic and lotic aquatic assemblages and play an important but underestimated role in aquatic ecosystems. Consequently, they are not included in studies on the dynamics of freshwater aquatic invertebrate communities. We report eight new records of microturbellarians from the Suquía River (Córdoba, Argentina): Catenula lemnae Dugès, 1832, Stenostomum arevaloi Gieysztor, 1931, Stenostomum aff. amphotum Marcus, 1945, Macrostomum aff. quiritium Beklemischev, 1951, Macrostomum platensis Adami, Damborenea & Ronderos, 2012, Microstomum sp., and Mesostoma erhenbergii (Focke, 1836). We discuss these results within the geomorphological history of the river basin

Relationship of Sphaeroma Quoianum to Sediment Characteristics and Invertebrate Community

Many important wetland functions are tied to sediment dynamics, which are largely governed by infaunal invertebrate communities. These communities are sensitive to changes in sediment structure and to colonization by non-native species. In a southern California salt marsh, the non-native Australian isopod Sphaeroma quoianum has created dense networks of burrows within the marsh banks. Since this isopod increases erosion in many areas and can change local invertebrate communities, its possible contribution to habitat loss in this already-scarce southern California ecosystem is an important question. This study connected S. quoianum burrows to increased proportions of crustaceans, decreased carbon content, and steep marsh bluffs. These results highlight the potential susceptibility of salt marsh habitat with steep edges to invasion by non-native species and demonstrate that such invasion can correlate to key changes in ecosystem function. These results also suggest that S. quoianum invasion of salt marsh habitats can alter native communities and ecosystem functions, thus incipient invasions should be of concern to managers and ecologists alike.

Shotgun metagenomics of soil invertebrate communities reflects taxonomy, biomass and reference genome properties

Metagenomics - shotgun sequencing of all DNA fragments from a community DNA extract - is routinely used to describe the composition, structure and function of microorganism communities. Advances in DNA sequencing and the availability of genome databases increasingly allow the use of shotgun metagenomics on eukaryotic communities. Metagenomics offers major advances in the recovery of biomass relationships, in comparison to taxonomic marker gene based approaches (metabarcoding). However, little is known about the factors that influence metagenomics data from eukaryotic communities, such as differences among organism groups, properties of reference genomes and genome assemblies. We evaluated how shotgun metagenomics records composition and biomass in artificial soil invertebrate communities. We generated mock communities of controlled biomass ratios from 28 species from all major soil mesofauna groups: mites, springtails, nematodes, tardigrades and potworms. We shotgun-sequenced these communities and taxonomically assigned them with a database of over 270 soil invertebrate genomes. We recovered 90% of the species, and observed relatively high false positive detection rates. We found strong differences in reads assigned to different taxa, with some groups consistently attracting more hits than others. Biomass could be predicted from read counts after considering taxon-specific differences. Larger genomes more complete assemblies consistently attracted more reads than genomes. The GC content of the genome assemblies had no effect on the biomass-read relationships. The results show considerable differences in taxon recovery and taxon specificity of biomass recovery from metagenomic sequence data. Properties of reference genomes and genome assemblies also influence biomass recovery, and they should be considered in metagenomic studies of eukaryotes. We provide a roadmap for investigating factors which influence metagenomics-based eukaryotic community reconstructions. Understanding these factors is timely as accessibility of DNA sequencing, and momentum for reference genomes projects show a future where the taxonomic assignment of DNA from any community sample becomes a reality.

Does long-term fire suppression impact leaf litter breakdown and aquatic invertebrate colonization in pine flatwoods wetlands?

Ephemeral wetlands are commonly embedded within pine uplands of the southeastern United States. These wetlands support diverse communities but have often been degraded by a lack of growing-season fires that historically maintained the vegetation structure. In the absence of fire, wetlands develop a dense mid-story of woody vegetation that increases canopy cover and decreases the amount of herbaceous vegetation. To understand how reduced fire frequency impacts wetland processes, we measured leaf litter breakdown rates and invertebrate communities using three common plant species (Longleaf Pine (Pinus palustris), Pineland Threeawn Grass (Aristida stricta), and Black Gum (Nyssa sylvatica)) that occur in pine flatwoods wetlands located on Eglin Air Force Base, Florida. We also tested whether or not the overall habitat type within a wetland (fire maintained or fire suppressed) affected these processes. We placed leaf packs containing 15.0 g of dried leaf litter from each species in both fire-maintained and fire-suppressed sections of three wetlands, removing them after 103–104 days submerged in the wetland. The amount of leaf litter remaining at the end of the study varied across species (N. sylvatica = 7.97 ± 0.17 g, A. stricta = 11.84 ± 0.06 g, and P. palustris = 11.37 ± 0.07 g (mean ± SE)) and was greater in fire-maintained habitat (leaf type: F2,45 = 437.2, P < 0.001; habitat type: F1,45 = 4.6, P = 0.037). We identified an average of 260 ± 33.5 (SE) invertebrates per leaf pack (range: 19–1,283), and the most abundant taxonomic groups were Cladocera, Isopoda, Acariformes, and Diptera. Invertebrate relative abundance varied significantly among litter species (approximately 39.9 ± 9.4 invertebrates per gram of leaf litter remaining in N. sylvatica leaf packs, 27.2 ± 5.3 invertebrates per gram of A. stricta, and 14.6 ± 3.1 invertebrates per gram of P. palustris (mean ± SE)) but not habitat type. However, both habitat (pseudo-F1,49 = 4.30, P = 0.003) and leaf litter type (pseudo-F2,49 = 3.62, P = 0.001) had a significant effect on invertebrate community composition. Finally, this work was part of ongoing projects focusing on the conservation of the critically imperiled Reticulated Flatwoods Salamander (Ambystoma bishopi), which breeds exclusively in pine flatwoods wetlands, and we examined the results as they relate to potential prey items for larval flatwoods salamanders. Overall, our results suggest that the vegetation changes associated with a lack of growing-season fires can impact both invertebrate communities and leaf litter breakdown.

Macroinvertebrate community responses to mammal control - Evidence for top-down trophic effects

<p>New Zealand’s invertebrates are characterised by extraordinary levels of endemism and a tendency toward gigantism, flightlessness and longevity. These characteristics have resulted in a high vulnerability to introduced mammals (i.e. possums, rats, mice, and stoats) which are not only a serious threat to these invertebrates, but have also altered food web interactions over the past two-hundred years. The establishment of fenced reserves and the aerial application of 1080 toxin are two methods of mammal control used in New Zealand to exclude and reduce introduced mammals, respectively. Responses of ground-dwelling invertebrates to mammal control, including a consideration of trophic cascades and their interactions, remain unclear. However, in this thesis, I aimed to investigate how changes in mammal communities inside and outside a fenced reserve (ZEALANDIA, Wellington) and before-and-after the application of 1080 in Aorangi Forest, influence the taxonomic and trophic abundance, body size and other traits of ground-dwelling invertebrates on the mainland of New Zealand. I also tested for effects of habitat variables (i.e. vegetation and elevation), fluctuations in predator populations (i.e. mice, rats and birds) and environmental variables (i.e. temperature). Additionally, I investigated how squid-bait suspended over pitfall traps influenced the sampling of ground weta and other invertebrates in Aorangi and Remutaka Forests. Contrary to my expectations, there were no differences in abundance or body size of invertebrates within ZEALANDIA (which excludes introduced mammals except mice) relative to the outside, except for Staphylinidae which were more abundant outside the fence. Differences in the agents of predation pressure from mainly mammals, outside the reserve, to mostly birds within ZEALANDIA, but potentially little change in net predation pressure, may explain this apparent similarity in ground-invertebrates. No differences in invertebrate communities were also recorded in the 1080-treated area (Aorangi Forest) after one year of the aerial application of 1080. It could imply that the use of this toxin does not produce any apparent detriment to invertebrates at a population level. The application of 1080 usually leads to changes in insectivorous predator (birds and introduced mammals) dynamics in the short-term mainly due to meso-predator release, which may affect invertebrate communities as a result. Temporal and spatial variation of different components of the ecosystem appear to be more significant drivers of invertebrate dynamics, than 1080 mammal control. For example, rats (Rattus spp.) limited the abundance and body size of large invertebrates (i.e. ground weta, cave weta and spiders) in Aorangi and Remutaka Forests. Smaller invertebrates such as gastropods, weevils and springtails were affected directly by spatial factors such as vegetation, while dung beetles responded to an increase in mouse density. Based on a comparison of pitfall trapping methods, I suggest the use of squid baiting as an effective method for sampling ground weta (Hemiandrus spp.) in New Zealand, as they responded positively to these baits. Finally, I propose ground weta and spiders as suitable indicators of rat predation, as they are abundant in forests and easily recognised by non-specialists, and they respond negatively to rat densities. This thesis underlines the importance of studying the effect of introduced mammal dynamics derived from mammal control in an ecosystem approach, to achieve conservation goals both in the short- and long-term, especially considering the New Zealand Government’s ambitious goal of eradicating three of the most prevalent mammal predators (rats, possums and stoats) by 2050.</p>

Macroinvertebrate community responses to mammal control - Evidence for top-down trophic effects

<p>New Zealand’s invertebrates are characterised by extraordinary levels of endemism and a tendency toward gigantism, flightlessness and longevity. These characteristics have resulted in a high vulnerability to introduced mammals (i.e. possums, rats, mice, and stoats) which are not only a serious threat to these invertebrates, but have also altered food web interactions over the past two-hundred years. The establishment of fenced reserves and the aerial application of 1080 toxin are two methods of mammal control used in New Zealand to exclude and reduce introduced mammals, respectively. Responses of ground-dwelling invertebrates to mammal control, including a consideration of trophic cascades and their interactions, remain unclear. However, in this thesis, I aimed to investigate how changes in mammal communities inside and outside a fenced reserve (ZEALANDIA, Wellington) and before-and-after the application of 1080 in Aorangi Forest, influence the taxonomic and trophic abundance, body size and other traits of ground-dwelling invertebrates on the mainland of New Zealand. I also tested for effects of habitat variables (i.e. vegetation and elevation), fluctuations in predator populations (i.e. mice, rats and birds) and environmental variables (i.e. temperature). Additionally, I investigated how squid-bait suspended over pitfall traps influenced the sampling of ground weta and other invertebrates in Aorangi and Remutaka Forests. Contrary to my expectations, there were no differences in abundance or body size of invertebrates within ZEALANDIA (which excludes introduced mammals except mice) relative to the outside, except for Staphylinidae which were more abundant outside the fence. Differences in the agents of predation pressure from mainly mammals, outside the reserve, to mostly birds within ZEALANDIA, but potentially little change in net predation pressure, may explain this apparent similarity in ground-invertebrates. No differences in invertebrate communities were also recorded in the 1080-treated area (Aorangi Forest) after one year of the aerial application of 1080. It could imply that the use of this toxin does not produce any apparent detriment to invertebrates at a population level. The application of 1080 usually leads to changes in insectivorous predator (birds and introduced mammals) dynamics in the short-term mainly due to meso-predator release, which may affect invertebrate communities as a result. Temporal and spatial variation of different components of the ecosystem appear to be more significant drivers of invertebrate dynamics, than 1080 mammal control. For example, rats (Rattus spp.) limited the abundance and body size of large invertebrates (i.e. ground weta, cave weta and spiders) in Aorangi and Remutaka Forests. Smaller invertebrates such as gastropods, weevils and springtails were affected directly by spatial factors such as vegetation, while dung beetles responded to an increase in mouse density. Based on a comparison of pitfall trapping methods, I suggest the use of squid baiting as an effective method for sampling ground weta (Hemiandrus spp.) in New Zealand, as they responded positively to these baits. Finally, I propose ground weta and spiders as suitable indicators of rat predation, as they are abundant in forests and easily recognised by non-specialists, and they respond negatively to rat densities. This thesis underlines the importance of studying the effect of introduced mammal dynamics derived from mammal control in an ecosystem approach, to achieve conservation goals both in the short- and long-term, especially considering the New Zealand Government’s ambitious goal of eradicating three of the most prevalent mammal predators (rats, possums and stoats) by 2050.</p>